EWM21199.1, cds9474 (CDS) Nannochloropsis gaditana

Overview
NameEWM21199.1
Unique Namecds9474
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:17508..18017 +

Link to JBrowse

Properties
Property NameValue
Start range17508
Start range.
Protein idEWM21199.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_102488g1.2219.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:17508..18017 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR000569HECT
Homology
BLAST of EWM21199.1 vs. NCBI_GenBank
Match: gi|585101287|gb|EWM21199.1| (hypothetical protein Naga_102488g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 338.576 bits (867), Expect = 1.094e-117
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0
Query:    1 LLAEILDWDPVLHRSLSCVLATEKAEHLGLSFTHSRPVWVQKGTDPGTRVVAVEETPLCEGGEVREVTDANKEEFVVRLLHAHFQAYLPAARALRRGLLDVLRPSNGRLLKIYTAMELATLSGGVSDLPVSEWRTHTTLSSALLHLSSSPPSGPPSPPSASRRGTDRRC 169
            LLAEILDWDPVLHRSLSCVLATEKAEHLGLSFTHSRPVWVQKGTDPGTRVVAVEETPLCEGGEVREVTDANKEEFVVRLLHAHFQAYLPAARALRRGLLDVLRPSNGRLLKIYTAMELATLSGGVSDLPVSEWRTHTTLSSALLHLSSSPPSGPPSPPSASRRGTDRRC
Sbjct:    1 LLAEILDWDPVLHRSLSCVLATEKAEHLGLSFTHSRPVWVQKGTDPGTRVVAVEETPLCEGGEVREVTDANKEEFVVRLLHAHFQAYLPAARALRRGLLDVLRPSNGRLLKIYTAMELATLSGGVSDLPVSEWRTHTTLSSALLHLSSSPPSGPPSPPSASRRGTDRRC 169          
BLAST of EWM21199.1 vs. NCBI_GenBank
Match: gi|1173951490|gb|OQR99364.1| (HECT E3 ubiquitin ligase [Achlya hypogyna])

HSP 1 Score: 72.7886 bits (177), Expect = 6.210e-12
Identity = 51/143 (35.66%), Postives = 75/143 (52.45%), Query Frame = 0
Query:    2 LAEILDWDPVLHRSLSCVLATEKAEHLGLSFTHSRPVWVQKGTDPGTRVVAVEETPLCEGGEVREVTDANKEEFVVRLL-HAHFQAYLPAARALRRGLLDVLRPSNGRLLKIYTAMELATLSGGVSDLPVSEWRTHTTLSSAL 143
            + +I   D  L++SL  +LATE AE L L+F+ S             R   VEE  L E G+   VTDANK ++V RL+ +  F+   P  RAL +GL  ++ P    LL  +   E   L  G++++ VS+W  +T +SS L
Sbjct:  452 MDDIESLDKTLYKSLRYLLATENAEDLALTFSVSE-----------LRGTTVEEVDLVENGQDIAVTDANKHDYVERLVRYLLFERIQPQLRALMQGLYAIIPP---ELLVPFDHKEFELLVTGLAEIDVSDWEANTDVSSNL 580          
BLAST of EWM21199.1 vs. NCBI_GenBank
Match: gi|301111246|ref|XP_002904702.1| (HECT E3 ubiquitin ligase, putative [Phytophthora infestans T30-4] >gi|262095032|gb|EEY53084.1| HECT E3 ubiquitin ligase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 63.1586 bits (152), Expect = 1.371e-8
Identity = 55/156 (35.26%), Postives = 72/156 (46.15%), Query Frame = 0
Query:    9 DPVLHRSLSCVLATEKAEHLGLSFTHSRPVWVQKGTDPGTRVVAVEETPLCEGGEVREVTDANKEEFVVRLL-HAHFQAYLPAARALRRGLLDVLRPSNGRLLKIYTAMELATLSGGVSDLPVSEWRTHTTLSSALLHLSSSPPSGPPSPPSASRR 163
            D  LHR    +   E AE L L FT  R     +G D     +  EE  L  GG+   VTDANKEE++  LL H  F A      AL +GL DVL  +   LL ++   EL  L  GV  + V++W +HT +             GP  P +A R+
Sbjct:  420 DAELHRHALWLRDNEGAEALALDFTAQR-----QGNDGS---IITEE--LKAGGKDIPVTDANKEEYLTLLLKHKMFGAVREQLEALLQGLYDVLPRT---LLAVFDYQELELLVCGVPSIDVADWESHTDVRYM------RAEQGPNKPAAAERQ 556          
BLAST of EWM21199.1 vs. NCBI_GenBank
Match: gi|570985536|gb|ETP44797.1| (hypothetical protein F442_08675 [Phytophthora parasitica P10297])

HSP 1 Score: 60.077 bits (144), Expect = 1.681e-7
Identity = 48/132 (36.36%), Postives = 65/132 (49.24%), Query Frame = 0
Query:    9 DPVLHRSLSCVLATEKAEHLGLSFTHSRPVWVQKGTDPGTRVVAVEETPLCEGGEVREVTDANKEEFVVRLL-HAHFQAYLPAARALRRGLLDVLRPSNGRLLKIYTAMELATLSGGVSDLPVSEWRTHTTL 139
            D  LHR    +   E  E L L FT  R     +GTD    ++  E  P   GG+   VTDANKEE++  LL H  F A      A+ +GL DVL  +   LL ++   EL  L  GV  + V++W +HT +
Sbjct:  537 DAELHRHALWLRENEGVEALALDFTAQR-----QGTDGA--IITEELKP---GGKDIPVTDANKEEYLTLLLKHKMFGAVREQLEAMLQGLYDVLPRT---LLAVFDYQELELLVCGVPSIDVADWESHTDV 655          
BLAST of EWM21199.1 vs. NCBI_GenBank
Match: gi|566024023|gb|ETI46934.1| (hypothetical protein F443_08741 [Phytophthora parasitica P1569])

HSP 1 Score: 60.077 bits (144), Expect = 1.697e-7
Identity = 48/132 (36.36%), Postives = 65/132 (49.24%), Query Frame = 0
Query:    9 DPVLHRSLSCVLATEKAEHLGLSFTHSRPVWVQKGTDPGTRVVAVEETPLCEGGEVREVTDANKEEFVVRLL-HAHFQAYLPAARALRRGLLDVLRPSNGRLLKIYTAMELATLSGGVSDLPVSEWRTHTTL 139
            D  LHR    +   E  E L L FT  R     +GTD    ++  E  P   GG+   VTDANKEE++  LL H  F A      A+ +GL DVL  +   LL ++   EL  L  GV  + V++W +HT +
Sbjct:  537 DAELHRHALWLRENEGVEALALDFTAQR-----QGTDGA--IITEELKP---GGKDIPVTDANKEEYLTLLLKHKMFGAVREQLEAMLQGLYDVLPRT---LLAVFDYQELELLVCGVPSIDVADWESHTDV 655          
BLAST of EWM21199.1 vs. NCBI_GenBank
Match: gi|567961334|gb|ETK86879.1| (hypothetical protein L915_08569 [Phytophthora parasitica])

HSP 1 Score: 60.077 bits (144), Expect = 1.714e-7
Identity = 48/132 (36.36%), Postives = 65/132 (49.24%), Query Frame = 0
Query:    9 DPVLHRSLSCVLATEKAEHLGLSFTHSRPVWVQKGTDPGTRVVAVEETPLCEGGEVREVTDANKEEFVVRLL-HAHFQAYLPAARALRRGLLDVLRPSNGRLLKIYTAMELATLSGGVSDLPVSEWRTHTTL 139
            D  LHR    +   E  E L L FT  R     +GTD    ++  E  P   GG+   VTDANKEE++  LL H  F A      A+ +GL DVL  +   LL ++   EL  L  GV  + V++W +HT +
Sbjct:  537 DAELHRHALWLRENEGVEALALDFTAQR-----QGTDGA--IITEELKP---GGKDIPVTDANKEEYLTLLLKHKMFGAVREQLEAMLQGLYDVLPRT---LLAVFDYQELELLVCGVPSIDVADWESHTDV 655          
BLAST of EWM21199.1 vs. NCBI_GenBank
Match: gi|567990055|gb|ETL40292.1| (hypothetical protein L916_08499 [Phytophthora parasitica] >gi|570951477|gb|ETP16734.1| hypothetical protein F441_08718 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 60.077 bits (144), Expect = 1.730e-7
Identity = 48/132 (36.36%), Postives = 65/132 (49.24%), Query Frame = 0
Query:    9 DPVLHRSLSCVLATEKAEHLGLSFTHSRPVWVQKGTDPGTRVVAVEETPLCEGGEVREVTDANKEEFVVRLL-HAHFQAYLPAARALRRGLLDVLRPSNGRLLKIYTAMELATLSGGVSDLPVSEWRTHTTL 139
            D  LHR    +   E  E L L FT  R     +GTD    ++  E  P   GG+   VTDANKEE++  LL H  F A      A+ +GL DVL  +   LL ++   EL  L  GV  + V++W +HT +
Sbjct:  537 DAELHRHALWLRENEGVEALALDFTAQR-----QGTDGA--IITEELKP---GGKDIPVTDANKEEYLTLLLKHKMFGAVREQLEAMLQGLYDVLPRT---LLAVFDYQELELLVCGVPSIDVADWESHTDV 655          
BLAST of EWM21199.1 vs. NCBI_GenBank
Match: gi|566024024|gb|ETI46935.1| (hypothetical protein, variant [Phytophthora parasitica P1569])

HSP 1 Score: 60.077 bits (144), Expect = 1.741e-7
Identity = 48/132 (36.36%), Postives = 65/132 (49.24%), Query Frame = 0
Query:    9 DPVLHRSLSCVLATEKAEHLGLSFTHSRPVWVQKGTDPGTRVVAVEETPLCEGGEVREVTDANKEEFVVRLL-HAHFQAYLPAARALRRGLLDVLRPSNGRLLKIYTAMELATLSGGVSDLPVSEWRTHTTL 139
            D  LHR    +   E  E L L FT  R     +GTD    ++  E  P   GG+   VTDANKEE++  LL H  F A      A+ +GL DVL  +   LL ++   EL  L  GV  + V++W +HT +
Sbjct:  404 DAELHRHALWLRENEGVEALALDFTAQR-----QGTDGA--IITEELKP---GGKDIPVTDANKEEYLTLLLKHKMFGAVREQLEAMLQGLYDVLPRT---LLAVFDYQELELLVCGVPSIDVADWESHTDV 522          
BLAST of EWM21199.1 vs. NCBI_GenBank
Match: gi|567961335|gb|ETK86880.1| (hypothetical protein, variant [Phytophthora parasitica] >gi|570985537|gb|ETP44798.1| hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 60.077 bits (144), Expect = 1.758e-7
Identity = 48/132 (36.36%), Postives = 65/132 (49.24%), Query Frame = 0
Query:    9 DPVLHRSLSCVLATEKAEHLGLSFTHSRPVWVQKGTDPGTRVVAVEETPLCEGGEVREVTDANKEEFVVRLL-HAHFQAYLPAARALRRGLLDVLRPSNGRLLKIYTAMELATLSGGVSDLPVSEWRTHTTL 139
            D  LHR    +   E  E L L FT  R     +GTD    ++  E  P   GG+   VTDANKEE++  LL H  F A      A+ +GL DVL  +   LL ++   EL  L  GV  + V++W +HT +
Sbjct:  404 DAELHRHALWLRENEGVEALALDFTAQR-----QGTDGA--IITEELKP---GGKDIPVTDANKEEYLTLLLKHKMFGAVREQLEAMLQGLYDVLPRT---LLAVFDYQELELLVCGVPSIDVADWESHTDV 522          
BLAST of EWM21199.1 vs. NCBI_GenBank
Match: gi|567990056|gb|ETL40293.1| (hypothetical protein, variant [Phytophthora parasitica] >gi|570951478|gb|ETP16735.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1])

HSP 1 Score: 60.077 bits (144), Expect = 1.844e-7
Identity = 48/132 (36.36%), Postives = 65/132 (49.24%), Query Frame = 0
Query:    9 DPVLHRSLSCVLATEKAEHLGLSFTHSRPVWVQKGTDPGTRVVAVEETPLCEGGEVREVTDANKEEFVVRLL-HAHFQAYLPAARALRRGLLDVLRPSNGRLLKIYTAMELATLSGGVSDLPVSEWRTHTTL 139
            D  LHR    +   E  E L L FT  R     +GTD    ++  E  P   GG+   VTDANKEE++  LL H  F A      A+ +GL DVL  +   LL ++   EL  L  GV  + V++W +HT +
Sbjct:  404 DAELHRHALWLRENEGVEALALDFTAQR-----QGTDGA--IITEELKP---GGKDIPVTDANKEEYLTLLLKHKMFGAVREQLEAMLQGLYDVLPRT---LLAVFDYQELELLVCGVPSIDVADWESHTDV 522          
The following BLAST results are available for this feature:
BLAST of EWM21199.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101287|gb|EWM21199.1|1.094e-117100.00hypothetical protein Naga_102488g1, partial [Nanno... [more]
gi|1173951490|gb|OQR99364.1|6.210e-1235.66HECT E3 ubiquitin ligase [Achlya hypogyna][more]
gi|301111246|ref|XP_002904702.1|1.371e-835.26HECT E3 ubiquitin ligase, putative [Phytophthora i... [more]
gi|570985536|gb|ETP44797.1|1.681e-736.36hypothetical protein F442_08675 [Phytophthora para... [more]
gi|566024023|gb|ETI46934.1|1.697e-736.36hypothetical protein F443_08741 [Phytophthora para... [more]
gi|567961334|gb|ETK86879.1|1.714e-736.36hypothetical protein L915_08569 [Phytophthora para... [more]
gi|567990055|gb|ETL40292.1|1.730e-736.36hypothetical protein L916_08499 [Phytophthora para... [more]
gi|566024024|gb|ETI46935.1|1.741e-736.36hypothetical protein, variant [Phytophthora parasi... [more]
gi|567961335|gb|ETK86880.1|1.758e-736.36hypothetical protein, variant [Phytophthora parasi... [more]
gi|567990056|gb|ETL40293.1|1.844e-736.36hypothetical protein, variant [Phytophthora parasi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9505rna9505Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications