EWM29725.1, cds946 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM29725.1
Unique Name	cds946
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002456.1:798312..798313 +
Alignment location	CM002456.1:798588..798749 +
Alignment location	CM002456.1:798968..799010 +
Alignment location	CM002456.1:799176..799397 +
Alignment location	CM002456.1:799512..799652 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM29725.1
Product	adp-ribosylation factor 3
Orig transcript id	gnl\|cribi\|Naga_100022g62.824.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:798312..798313 +
CM002456.1	supercontig	CM002456.1:798588..798749 +
CM002456.1	supercontig	CM002456.1:798968..799010 +
CM002456.1	supercontig	CM002456.1:799176..799397 +
CM002456.1	supercontig	CM002456.1:799512..799652 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport
GO:0007165	signal transduction
GO:0006886	intracellular protein transport
GO:0015031	protein transport
GO:0007264	small GTPase mediated signal transduction

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0005525	GTP binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **INTERPRO**
Term	Definition
IPR005225	Small_GTP-bd_dom
IPR027417	P-loop_NTPase
IPR006687	Small_GTPase_SAR1
IPR003579	Small_GTPase_Rab_type
IPR024156	Small_GTPase_ARF
IPR006689	Small_GTPase_ARF/SAR

Homology

[Close]

BLAST of EWM29725.1 vs. NCBI_GenBank
Match: gi|585112305|gb|EWM29725.1| (adp-ribosylation factor 3 [Nannochloropsis gaditana])

HSP 1 Score: 387.497 bits (994), Expect = 2.300e-136
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0

Query:    1 MGLLFSRIIQSFSAMFGNKECRILILGLDNAGKTTILNRLQNDSDEVMQTVPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADVERLAIAKQELCAMLEEEELRESILLVFANKQDQKGALNASQISEALGLSNLRSRQWSIQETSATKGKGLFEGFDWLSTAILGGNTSA 189
            MGLLFSRIIQSFSAMFGNKECRILILGLDNAGKTTILNRLQNDSDEVMQTVPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADVERLAIAKQELCAMLEEEELRESILLVFANKQDQKGALNASQISEALGLSNLRSRQWSIQETSATKGKGLFEGFDWLSTAILGGNTSA
Sbjct:    1 MGLLFSRIIQSFSAMFGNKECRILILGLDNAGKTTILNRLQNDSDEVMQTVPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADVERLAIAKQELCAMLEEEELRESILLVFANKQDQKGALNASQISEALGLSNLRSRQWSIQETSATKGKGLFEGFDWLSTAILGGNTSA 189

[Close]

BLAST of EWM29725.1 vs. NCBI_GenBank
Match: gi|1072232149|gb|OEU16881.1| (Arl1-family small GTPase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 311.997 bits (798), Expect = 1.828e-106
Identity = 148/184 (80.43%), Postives = 166/184 (90.22%), Query Frame = 0

Query:    1 MGLLFSRIIQSFSAMFGNKECRILILGLDNAGKTTILNRLQNDSDEVMQTVPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADVERLAIAKQELCAMLEEEELRESILLVFANKQDQKGALNASQISEALGLSNLRSRQWSIQETSATKGKGLFEGFDWLSTAILG 184
            MG+LFS++   F  +FG+KE RILILGLDNAGKTTIL RLQN+SDE +QT+PTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSAD ER+ +AK EL AMLEE+EL++SILLVFANKQDQKGA+NA QIS+ALGL ++R+RQWSIQETSA KGKGLFEGFDWL T I G
Sbjct:    1 MGILFSKV---FETLFGSKEVRILILGLDNAGKTTILYRLQNESDEAVQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADAERMPVAKGELAAMLEEDELKDSILLVFANKQDQKGAMNAQQISDALGLPDIRNRQWSIQETSALKGKGLFEGFDWLVTCIKG 181

[Close]

BLAST of EWM29725.1 vs. NCBI_GenBank
Match: gi|219110008|ref|XP_002176756.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411291|gb|EEC51219.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 305.064 bits (780), Expect = 7.942e-104
Identity = 144/184 (78.26%), Postives = 165/184 (89.67%), Query Frame = 0

Query:    1 MGLLFSRIIQSFSAMFGNKECRILILGLDNAGKTTILNRLQNDSDEVMQTVPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADVERLAIAKQELCAMLEEEELRESILLVFANKQDQKGALNASQISEALGLSNLRSRQWSIQETSATKGKGLFEGFDWLSTAILG 184
            MG++ SR+   F  +FG+KE RILILGLDNAGKTTIL RLQN+SDE +QT+PTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSAD ER+++A+ EL AMLEEE+L+++ILLVFANKQDQKGA++A QIS+ALGL  +R+RQWSIQETSA KGKGLFEGFDWL T I G
Sbjct:    1 MGIIMSRL---FEGLFGSKEVRILILGLDNAGKTTILYRLQNESDEAVQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADTERMSVARGELAAMLEEEDLKDAILLVFANKQDQKGAMDAEQISDALGLPEVRNRQWSIQETSALKGKGLFEGFDWLVTCIKG 181

[Close]

BLAST of EWM29725.1 vs. NCBI_GenBank
Match: gi|698817919|ref|XP_009841988.1| (hypothetical protein H257_15545 [Aphanomyces astaci] >gi|574103014|gb|ETV68559.1| hypothetical protein H257_15545 [Aphanomyces astaci])

HSP 1 Score: 304.294 bits (778), Expect = 1.522e-103
Identity = 144/184 (78.26%), Postives = 170/184 (92.39%), Query Frame = 0

Query:    1 MGLLFSRIIQSFSAMFGNKECRILILGLDNAGKTTILNRLQNDSDEVMQTVPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADVERLAIAKQELCAMLEEEELRESILLVFANKQDQKGALNASQISEALGLSNLRSRQWSIQETSATKGKGLFEGFDWLSTAILG 184
            MG++FS++   F+++FG+KE RILILGLDNAGKTTIL RLQ  ++E+ QTVPTIGFNVET+QYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAII+VVDSAD++RL IAKQEL AMLEEEEL++SILLVFANKQDQ+GALNA+QISEA+GLS++R+RQWSI+ET+ATKG GLFEGFDW+ T I G
Sbjct:    1 MGIMFSKV---FASLFGSKEVRILILGLDNAGKTTILYRLQ--AEEIEQTVPTIGFNVETMQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIYVVDSADIDRLNIAKQELHAMLEEEELKDSILLVFANKQDQRGALNAAQISEAMGLSDIRNRQWSIKETTATKGSGLFEGFDWIVTCIKG 179

[Close]

BLAST of EWM29725.1 vs. NCBI_GenBank
Match: gi|1173947964|gb|OQR96129.1| (ADP-ribosylation factor family [Achlya hypogyna])

HSP 1 Score: 303.523 bits (776), Expect = 3.071e-103
Identity = 145/184 (78.80%), Postives = 169/184 (91.85%), Query Frame = 0

Query:    1 MGLLFSRIIQSFSAMFGNKECRILILGLDNAGKTTILNRLQNDSDEVMQTVPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADVERLAIAKQELCAMLEEEELRESILLVFANKQDQKGALNASQISEALGLSNLRSRQWSIQETSATKGKGLFEGFDWLSTAILG 184
            MG++FS++   F+++FG+KE RILILGLDNAGKTTIL RLQ  +DE+ QTVPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAII+VVD ADV+RL IAKQEL AMLEEEEL++SILLVFANKQDQ+GALNA+Q+SEA+GLS++R+RQWSI+ET+ATKG GLFEGFDW+ T I G
Sbjct:    1 MGIMFSKV---FASLFGSKEVRILILGLDNAGKTTILYRLQ--ADEIEQTVPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIYVVDCADVDRLNIAKQELHAMLEEEELKDSILLVFANKQDQRGALNAAQLSEAMGLSDIRNRQWSIKETTATKGSGLFEGFDWIVTCIKG 179

[Close]

BLAST of EWM29725.1 vs. NCBI_GenBank
Match: gi|673022210|ref|XP_008865066.1| (hypothetical protein H310_03090 [Aphanomyces invadans] >gi|574479997|gb|ETW06991.1| hypothetical protein H310_03090 [Aphanomyces invadans])

HSP 1 Score: 303.523 bits (776), Expect = 3.542e-103
Identity = 144/184 (78.26%), Postives = 170/184 (92.39%), Query Frame = 0

Query:    1 MGLLFSRIIQSFSAMFGNKECRILILGLDNAGKTTILNRLQNDSDEVMQTVPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADVERLAIAKQELCAMLEEEELRESILLVFANKQDQKGALNASQISEALGLSNLRSRQWSIQETSATKGKGLFEGFDWLSTAILG 184
            MG+LFS++   F+++FG+KE RILILGLDNAGKTTIL RLQ  ++E+ QTVPTIGFN+ET+QYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAII+VVDSAD++RL IAKQEL AMLEEEEL++SILLVFANKQDQ+GALNA+QISEA+GLS++R+RQWSI+ET+ATKG GLFEGFDW+ T I G
Sbjct:    1 MGILFSKV---FASLFGSKEVRILILGLDNAGKTTILYRLQ--AEEIEQTVPTIGFNLETMQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIYVVDSADIDRLNIAKQELHAMLEEEELKDSILLVFANKQDQRGALNAAQISEAMGLSDIRNRQWSIKETTATKGSGLFEGFDWIVTCIKG 179

[Close]

BLAST of EWM29725.1 vs. NCBI_GenBank
Match: gi|301091305|ref|XP_002895840.1| (ADP-ribosylation factor family [Phytophthora infestans T30-4] >gi|675168199|ref|XP_008892984.1| hypothetical protein PPTG_01430 [Phytophthora parasitica INRA-310] >gi|695414899|ref|XP_009526423.1| hypothetical protein PHYSODRAFT_314739 [Phytophthora sojae] >gi|262096551|gb|EEY54603.1| ADP-ribosylation factor family [Phytophthora infestans T30-4] >gi|348677548|gb|EGZ17365.1| hypothetical protein PHYSODRAFT_314739 [Phytophthora sojae] >gi|566022594|gb|ETI45505.1| hypothetical protein F443_09931 [Phytophthora parasitica P1569] >gi|567959895|gb|ETK85459.1| hypothetical protein L915_09728 [Phytophthora parasitica] >gi|567988628|gb|ETL38903.1| hypothetical protein L916_09632 [Phytophthora parasitica] >gi|568017831|gb|ETL92008.1| hypothetical protein L917_09555 [Phytophthora parasitica] >gi|568048245|gb|ETM45304.1| hypothetical protein L914_09598 [Phytophthora parasitica] >gi|568106528|gb|ETN21158.1| hypothetical protein PPTG_01430 [Phytophthora parasitica INRA-310] >gi|570326218|gb|ETO74166.1| hypothetical protein F444_10026 [Phytophthora parasitica P1976] >gi|570950074|gb|ETP15331.1| hypothetical protein F441_09880 [Phytophthora parasitica CJ01A1] >gi|570983606|gb|ETP43405.1| hypothetical protein F442_09834 [Phytophthora parasitica P10297])

HSP 1 Score: 303.138 bits (775), Expect = 4.084e-103
Identity = 146/184 (79.35%), Postives = 168/184 (91.30%), Query Frame = 0

Query:    1 MGLLFSRIIQSFSAMFGNKECRILILGLDNAGKTTILNRLQNDSDEVMQTVPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADVERLAIAKQELCAMLEEEELRESILLVFANKQDQKGALNASQISEALGLSNLRSRQWSIQETSATKGKGLFEGFDWLSTAILG 184
            MG+  S++   F+A+FG+KE RILILGLDNAGKTTIL RLQ  +DE+ QTVPTIGFN+ETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAII+VVDSADV+RL IAKQEL AMLEEEEL++SILLVFANKQDQKGALNA+QISEA+GLS++R+RQWSI+ET+AT+G GLFEGFDW+ T I G
Sbjct:    1 MGIAMSKV---FAALFGSKEVRILILGLDNAGKTTILYRLQ--ADEIEQTVPTIGFNMETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIYVVDSADVDRLNIAKQELHAMLEEEELKDSILLVFANKQDQKGALNAAQISEAMGLSDIRNRQWSIKETTATQGSGLFEGFDWIVTCIKG 179

[Close]

BLAST of EWM29725.1 vs. NCBI_GenBank
Match: gi|1214712543|gb|OWZ23479.1| (ADP-ribosylation factor protein [Phytophthora megakarya])

HSP 1 Score: 302.368 bits (773), Expect = 7.714e-103
Identity = 145/184 (78.80%), Postives = 168/184 (91.30%), Query Frame = 0

Query:    1 MGLLFSRIIQSFSAMFGNKECRILILGLDNAGKTTILNRLQNDSDEVMQTVPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADVERLAIAKQELCAMLEEEELRESILLVFANKQDQKGALNASQISEALGLSNLRSRQWSIQETSATKGKGLFEGFDWLSTAILG 184
            MG+  S++   F+A+FG+KE RILILGLDNAGKTTIL RLQ  +DE+ QTVPTIGFN+ETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAII+VVDSAD++RL IAKQEL AMLEEEEL++SILLVFANKQDQKGALNA+QISEA+GLS++R+RQWSI+ET+AT+G GLFEGFDW+ T I G
Sbjct:    1 MGIAMSKV---FAALFGSKEVRILILGLDNAGKTTILYRLQ--ADEIEQTVPTIGFNMETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIYVVDSADIDRLNIAKQELHAMLEEEELKDSILLVFANKQDQKGALNAAQISEAMGLSDIRNRQWSIKETTATQGSGLFEGFDWIVTCIKG 179

[Close]

BLAST of EWM29725.1 vs. NCBI_GenBank
Match: gi|1210516260|dbj|GAX24826.1| (ADP-ribosylation factor-like protein 1 [Fistulifera solaris] >gi|1210526664|dbj|GAX14622.1| ADP-ribosylation factor-like protein 1 [Fistulifera solaris])

HSP 1 Score: 302.368 bits (773), Expect = 9.057e-103
Identity = 143/184 (77.72%), Postives = 164/184 (89.13%), Query Frame = 0

Query:    1 MGLLFSRIIQSFSAMFGNKECRILILGLDNAGKTTILNRLQNDSDEVMQTVPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADVERLAIAKQELCAMLEEEELRESILLVFANKQDQKGALNASQISEALGLSNLRSRQWSIQETSATKGKGLFEGFDWLSTAILG 184
            MG+  SR+   F ++FG+KE RILILGLDNAGKTTIL RLQN+SDE +QT+PTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAI+FVVDSAD +R+++AK EL AMLEE++L+ +ILLVFANKQDQKGA+NA QIS+ALGL  +R+RQWSIQETSA KGKGLFEGFDWL T I G
Sbjct:    1 MGIYMSRL---FESLFGSKEVRILILGLDNAGKTTILYRLQNESDEAVQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSADHDRMSVAKGELAAMLEEDDLKGAILLVFANKQDQKGAMNAGQISDALGLPEVRNRQWSIQETSAVKGKGLFEGFDWLVTCIKG 181

[Close]

BLAST of EWM29725.1 vs. NCBI_GenBank
Match: gi|1173952612|gb|OQS00252.1| (ADP-ribosylation factor family [Thraustotheca clavata])

HSP 1 Score: 301.212 bits (770), Expect = 2.577e-102
Identity = 143/184 (77.72%), Postives = 169/184 (91.85%), Query Frame = 0

Query:    1 MGLLFSRIIQSFSAMFGNKECRILILGLDNAGKTTILNRLQNDSDEVMQTVPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADVERLAIAKQELCAMLEEEELRESILLVFANKQDQKGALNASQISEALGLSNLRSRQWSIQETSATKGKGLFEGFDWLSTAILG 184
            MG++FS++   F+++FG+KE RILILGLDNAGKTTIL RLQ  +DE+ QTVPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAII+VVD ADV+RL IAKQEL AMLEEEEL+++ILLVFANKQDQ+GALNA+Q+SEA+GLS++++RQWSI+ET+ATKG GLFEGFDW+ T I G
Sbjct:    1 MGIMFSKV---FASLFGSKEVRILILGLDNAGKTTILYRLQ--ADEIEQTVPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIYVVDCADVDRLNIAKQELHAMLEEEELKDAILLVFANKQDQRGALNAAQLSEAMGLSDIKNRQWSIKETTATKGTGLFEGFDWIVTCIKG 179

The following BLAST results are available for this feature:

BLAST of EWM29725.1 vs. NCBI_GenBank

BLAST of EWM29725.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585112305\|gb\|EWM29725.1\|	2.300e-136	100.00	adp-ribosylation factor 3 [Nannochloropsis gaditan...	[more]
gi\|1072232149\|gb\|OEU16881.1\|	1.828e-106	80.43	Arl1-family small GTPase [Fragilariopsis cylindrus...	[more]
gi\|219110008\|ref\|XP_002176756.1\|	7.942e-104	78.26	predicted protein [Phaeodactylum tricornutum CCAP ...	[more]
gi\|698817919\|ref\|XP_009841988.1\|	1.522e-103	78.26	hypothetical protein H257_15545 [Aphanomyces astac...	[more]
gi\|1173947964\|gb\|OQR96129.1\|	3.071e-103	78.80	ADP-ribosylation factor family [Achlya hypogyna]	[more]
gi\|673022210\|ref\|XP_008865066.1\|	3.542e-103	78.26	hypothetical protein H310_03090 [Aphanomyces invad...	[more]
gi\|301091305\|ref\|XP_002895840.1\|	4.084e-103	79.35	ADP-ribosylation factor family [Phytophthora infes...	[more]
gi\|1214712543\|gb\|OWZ23479.1\|	7.714e-103	78.80	ADP-ribosylation factor protein [Phytophthora mega...	[more]
gi\|1210516260\|dbj\|GAX24826.1\|	9.057e-103	77.72	ADP-ribosylation factor-like protein 1 [Fistulifer...	[more]
gi\|1173952612\|gb\|OQS00252.1\|	2.577e-102	77.72	ADP-ribosylation factor family [Thraustotheca clav...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna946	rna946	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications