EWM21220.1, cds9451 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM21220.1
Unique Name	cds9451
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037253.1:391910..392540 -

Link to JBrowse

Properties


Property Name	Value
Start range	391910
Start range	.
Protein id	EWM21220.1
Product	hypothetical protein
Partial	true
Orig transcript id	gnl\|cribi\|Naga_100521g4.3640.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:391910..392540 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM21220.1 vs. NCBI_GenBank
Match: gi|585101330|gb|EWM21220.1| (hypothetical protein Naga_100521g4, partial [Nannochloropsis gaditana])

HSP 1 Score: 402.905 bits (1034), Expect = 8.738e-142
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0

Query:    1 MPTLAVKRGVLVHVLAALVLTAPASEGQLFGGLGAARGRTNNNNNNAAGDNGGGLFGFGGGGLMNAFTTRSPDPTKAPTNAPTLAPTKAPTLAPTRKPLIKKETAPPTSYWEGDDDEDDDFTWPPTPVSENGENGPDLELTADDDADFDPLAADDDLEDDDFEIDEDEKALAADDDIEDDDFEIDEDEEALAADDDVEDDDFEIDEDEEV 210
            MPTLAVKRGVLVHVLAALVLTAPASEGQLFGGLGAARGRTNNNNNNAAGDNGGGLFGFGGGGLMNAFTTRSPDPTKAPTNAPTLAPTKAPTLAPTRKPLIKKETAPPTSYWEGDDDEDDDFTWPPTPVSENGENGPDLELTADDDADFDPLAADDDLEDDDFEIDEDEKALAADDDIEDDDFEIDEDEEALAADDDVEDDDFEIDEDEEV
Sbjct:    1 MPTLAVKRGVLVHVLAALVLTAPASEGQLFGGLGAARGRTNNNNNNAAGDNGGGLFGFGGGGLMNAFTTRSPDPTKAPTNAPTLAPTKAPTLAPTRKPLIKKETAPPTSYWEGDDDEDDDFTWPPTPVSENGENGPDLELTADDDADFDPLAADDDLEDDDFEIDEDEKALAADDDIEDDDFEIDEDEEALAADDDVEDDDFEIDEDEEV 210

The following BLAST results are available for this feature:

BLAST of EWM21220.1 vs. NCBI_GenBank

BLAST of EWM21220.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585101330\|gb\|EWM21220.1\|	8.738e-142	100.00	hypothetical protein Naga_100521g4, partial [Nanno...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna9482	rna9482	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications