EWM21234.1, cds9439 (CDS) Nannochloropsis gaditana

Overview
NameEWM21234.1
Unique Namecds9439
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:363207..363333 -
Alignment locationKK037253.1:362812..362984 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21234.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101310g1.9040.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:363207..363333 -
KK037253.1supercontigKK037253.1:362812..362984 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM21234.1 vs. NCBI_GenBank
Match: gi|585101352|gb|EWM21234.1| (hypothetical protein Naga_101310g1 [Nannochloropsis gaditana])

HSP 1 Score: 199.134 bits (505), Expect = 1.220e-64
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0
Query:    1 MTGNNLSLLALRIWPVDEPSVEQGHWGGIWKVSLLTALAQVLGLIGLPWLPRNVHHQRESQGKGRDRRNLWGGRALVAFVVLAFCWTVILDVVTIVQEF 99
            MTGNNLSLLALRIWPVDEPSVEQGHWGGIWKVSLLTALAQVLGLIGLPWLPRNVHHQRESQGKGRDRRNLWGGRALVAFVVLAFCWTVILDVVTIVQEF
Sbjct:    1 MTGNNLSLLALRIWPVDEPSVEQGHWGGIWKVSLLTALAQVLGLIGLPWLPRNVHHQRESQGKGRDRRNLWGGRALVAFVVLAFCWTVILDVVTIVQEF 99          
BLAST of EWM21234.1 vs. NCBI_GenBank
Match: gi|585110164|gb|EWM27840.1| (folate biopterin transporter [Nannochloropsis gaditana])

HSP 1 Score: 80.1073 bits (196), Expect = 1.816e-15
Identity = 39/97 (40.21%), Postives = 60/97 (61.86%), Query Frame = 0
Query:    1 MTGNNLSLLALRIWPVDEPSVEQGHWGGIWKVSLLTALAQVLGLIGLPWLPRNVHHQRESQGKGRDRRNLWGGRALVAFVVLAFCWTVILDVVTIVQ 97
            MT  N+ LL L+IW V   ++  G++ G+W+++LL  L Q++G+  +  LPRN  HQ   Q    DR  +WGG   ++FVV+AF  T++LDV  +V 
Sbjct:  575 MTSTNIGLLFLKIWDVGAETIAAGNFEGVWRLTLLCGLCQLVGVCFVKLLPRNAKHQEMLQ--SFDRNIVWGGICFISFVVIAFMATIVLDVTYMVH 669          
BLAST of EWM21234.1 vs. NCBI_GenBank
Match: gi|585105320|gb|EWM24033.1| (folate biopterin transporter [Nannochloropsis gaditana])

HSP 1 Score: 62.7734 bits (151), Expect = 2.015e-9
Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 0
Query:    3 GNNLSLLALRIWPVDEPSVEQGHWGGIWKVSLLTALAQVLGLIGLPWLPRNVHHQRESQGKGRDRRNLWGGRALVAFVVLAFCWTVILDVVTIVQ 97
            G++L  L   IW V   ++  G W G+WK+SLLT+L Q LGL  L  LPR+V HQ+  Q    D+R+ WGG   V F+V+A+ WT++  + + V+
Sbjct:  501 GSDLGTLMTGIWDVSNTALAAGEWTGLWKLSLLTSLLQPLGLCLLFLLPRDVAHQKAMQKC--DKRDWWGGFGFVTFLVVAWTWTIVQTLASWVE 593          
The following BLAST results are available for this feature:
BLAST of EWM21234.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585101352|gb|EWM21234.1|1.220e-64100.00hypothetical protein Naga_101310g1 [Nannochloropsi... [more]
gi|585110164|gb|EWM27840.1|1.816e-1540.21folate biopterin transporter [Nannochloropsis gadi... [more]
gi|585105320|gb|EWM24033.1|2.015e-942.11folate biopterin transporter [Nannochloropsis gadi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9470rna9470Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications