EWM21244.1, cds9427 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM21244.1
Unique Name	cds9427
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037253.1:340047..340349 -
Alignment location	KK037253.1:339790..339933 -
Alignment location	KK037253.1:339533..339661 -

Link to JBrowse

Properties


Property Name	Value
Start range	339533
Start range	.
Protein id	EWM21244.1
Product	hypothetical protein
Partial	true
Orig transcript id	gnl\|cribi\|Naga_100910g1.5855.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:340047..340349 -
KK037253.1	supercontig	KK037253.1:339790..339933 -
KK037253.1	supercontig	KK037253.1:339533..339661 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM21244.1 vs. NCBI_GenBank
Match: gi|585101374|gb|EWM21244.1| (hypothetical protein Naga_100910g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 373.629 bits (958), Expect = 1.126e-130
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0

Query:    1 MGAPSTRRVSKSGQRDGHGVNRASFHRSPLIMALLLPLLPPPVWGWGGTRSPFPCSAFMPGGASGTSSHASTEGRRRLGWERTTGLKATTTPLTSSTTPVKAIPASPSPSTSSPPYSTVDPPSSSSSPGPSPRPSVIANKLQKPQNAPTVWVEFGALAASLPPEKIINLGQGFPNWVRREGGREGVGGTSEG 192
            MGAPSTRRVSKSGQRDGHGVNRASFHRSPLIMALLLPLLPPPVWGWGGTRSPFPCSAFMPGGASGTSSHASTEGRRRLGWERTTGLKATTTPLTSSTTPVKAIPASPSPSTSSPPYSTVDPPSSSSSPGPSPRPSVIANKLQKPQNAPTVWVEFGALAASLPPEKIINLGQGFPNWVRREGGREGVGGTSEG
Sbjct:    1 MGAPSTRRVSKSGQRDGHGVNRASFHRSPLIMALLLPLLPPPVWGWGGTRSPFPCSAFMPGGASGTSSHASTEGRRRLGWERTTGLKATTTPLTSSTTPVKAIPASPSPSTSSPPYSTVDPPSSSSSPGPSPRPSVIANKLQKPQNAPTVWVEFGALAASLPPEKIINLGQGFPNWVRREGGREGVGGTSEG 192

The following BLAST results are available for this feature:

BLAST of EWM21244.1 vs. NCBI_GenBank

BLAST of EWM21244.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585101374\|gb\|EWM21244.1\|	1.126e-130	100.00	hypothetical protein Naga_100910g1, partial [Nanno...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna9458	rna9458	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications