EWM21248.1, cds9425 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM21248.1
Unique Name	cds9425
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037253.1:335141..335393 -
Alignment location	KK037253.1:334805..334974 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM21248.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100927g2.8296.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:335141..335393 -
KK037253.1	supercontig	KK037253.1:334805..334974 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

[Close]

BLAST of EWM21248.1 vs. NCBI_GenBank
Match: gi|585101380|gb|EWM21248.1| (hypothetical protein Naga_100927g2 [Nannochloropsis gaditana])

HSP 1 Score: 279.256 bits (713), Expect = 4.294e-95
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0

Query:    1 MSTWSTASNGGPKDSVSNFSSTRRKPSLCQTGHSTSNCSENVRNVNGPRTTSLPKALAIAMAFAAGVLCNPTTAFHVPNFLSLPCIPSQLPLSRTPAVWGGHEVRGGHSLALYPPLVGPAVPTGVRSLTLFSLPVPGCLS 140
            MSTWSTASNGGPKDSVSNFSSTRRKPSLCQTGHSTSNCSENVRNVNGPRTTSLPKALAIAMAFAAGVLCNPTTAFHVPNFLSLPCIPSQLPLSRTPAVWGGHEVRGGHSLALYPPLVGPAVPTGVRSLTLFSLPVPGCLS
Sbjct:    1 MSTWSTASNGGPKDSVSNFSSTRRKPSLCQTGHSTSNCSENVRNVNGPRTTSLPKALAIAMAFAAGVLCNPTTAFHVPNFLSLPCIPSQLPLSRTPAVWGGHEVRGGHSLALYPPLVGPAVPTGVRSLTLFSLPVPGCLS 140

The following BLAST results are available for this feature:

BLAST of EWM21248.1 vs. NCBI_GenBank

BLAST of EWM21248.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585101380\|gb\|EWM21248.1\|	4.294e-95	100.00	hypothetical protein Naga_100927g2 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna9455	rna9455	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications