EWM21251.1, cds9421 (CDS) Nannochloropsis gaditana

Overview
NameEWM21251.1
Unique Namecds9421
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:324094..324216 -
Alignment locationKK037253.1:323473..323862 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21251.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101184g1.2342.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:324094..324216 -
KK037253.1supercontigKK037253.1:323473..323862 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM21251.1 vs. NCBI_GenBank
Match: gi|585101386|gb|EWM21251.1| (hypothetical protein Naga_101184g1 [Nannochloropsis gaditana])

HSP 1 Score: 341.273 bits (874), Expect = 1.091e-118
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0 
Query:    1 MSQSLFNKLQSGLNYLDGAFKETMEGEEEATEEMLLEQRRQRQLRMTAVQQQAAFGSALYPSDSGTQESGFPPGMVARKEDAATGKGNEIPVKEEKGHEHLAGTARKPAPPAPSRRSPPPPHPGVHIRREGGSAEEEVAETPACLLGMSSPLAAGPLVRESEVWKEEAGE 170
            MSQSLFNKLQSGLNYLDGAFKETMEGEEEATEEMLLEQRRQRQLRMTAVQQQAAFGSALYPSDSGTQESGFPPGMVARKEDAATGKGNEIPVKEEKGHEHLAGTARKPAPPAPSRRSPPPPHPGVHIRREGGSAEEEVAETPACLLGMSSPLAAGPLVRESEVWKEEAGE
Sbjct:    1 MSQSLFNKLQSGLNYLDGAFKETMEGEEEATEEMLLEQRRQRQLRMTAVQQQAAFGSALYPSDSGTQESGFPPGMVARKEDAATGKGNEIPVKEEKGHEHLAGTARKPAPPAPSRRSPPPPHPGVHIRREGGSAEEEVAETPACLLGMSSPLAAGPLVRESEVWKEEAGE 170
[Close]
BLAST of EWM21251.1 vs. NCBI_GenBank
Match: gi|553195684|ref|XP_005856183.1| (hypothetical protein NGA_0319100 [Nannochloropsis gaditana CCMP526] >gi|422292861|gb|EKU20163.1| hypothetical protein NGA_0319100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 325.865 bits (834), Expect = 8.152e-112
Identity = 162/163 (99.39%), Postives = 163/163 (100.00%), Query Frame = 0 
Query:    1 MSQSLFNKLQSGLNYLDGAFKETMEGEEEATEEMLLEQRRQRQLRMTAVQQQAAFGSALYPSDSGTQESGFPPGMVARKEDAATGKGNEIPVKEEKGHEHLAGTARKPAPPAPSRRSPPPPHPGVHIRREGGSAEEEVAETPACLLGMSSPLAAGPLVRESEV 163
            MSQSLFNKLQSGLNYLDGAFKETMEGEEEATEEMLLEQRRQRQLRMTAVQQQAAFGSALYPSDSGTQESGFPPGMVAR+EDAATGKGNEIPVKEEKGHEHLAGTARKPAPPAPSRRSPPPPHPGVHIRREGGSAEEEVAETPACLLGMSSPLAAGPLVRESEV
Sbjct:    1 MSQSLFNKLQSGLNYLDGAFKETMEGEEEATEEMLLEQRRQRQLRMTAVQQQAAFGSALYPSDSGTQESGFPPGMVAREEDAATGKGNEIPVKEEKGHEHLAGTARKPAPPAPSRRSPPPPHPGVHIRREGGSAEEEVAETPACLLGMSSPLAAGPLVRESEV 163
The following BLAST results are available for this feature:
BLAST of EWM21251.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585101386|gb|EWM21251.1|1.091e-118100.00hypothetical protein Naga_101184g1 [Nannochloropsi... [more]
gi|553195684|ref|XP_005856183.1|8.152e-11299.39hypothetical protein NGA_0319100 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9451rna9451Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications