EWM21294.1, cds9380 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21294.1 vs. NCBI_GenBank
Match: gi|585101465|gb|EWM21294.1| (atp-dependent chaperone protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 245.743 bits (626), Expect = 4.731e-82 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 Query: 1 LGLKVEENVLHVLADLGYDPAYGARPLKRALQTAVLNPLATLLLEGRAKAESLLWLVRMPRREVREGRDLVIYGKGAIGGEEEGEGEEGLEGLLLGEDVLVCRVVEGGFVEGGEKGGGEEGKEAGREREGEAA 133 LGLKVEENVLHVLADLGYDPAYGARPLKRALQTAVLNPLATLLLEGRAKAESLLWLVRMPRREVREGRDLVIYGKGAIGGEEEGEGEEGLEGLLLGEDVLVCRVVEGGFVEGGEKGGGEEGKEAGREREGEAA Sbjct: 1 LGLKVEENVLHVLADLGYDPAYGARPLKRALQTAVLNPLATLLLEGRAKAESLLWLVRMPRREVREGRDLVIYGKGAIGGEEEGEGEEGLEGLLLGEDVLVCRVVEGGFVEGGEKGGGEEGKEAGREREGEAA 133
BLAST of EWM21294.1 vs. NCBI_GenBank
Match: gi|764607698|ref|WP_044428598.1| (ATP-dependent chaperone ClpB [Skermanella aerolata] >gi|763834951|gb|KJB95403.1| ATPase AAA [Skermanella aerolata KACC 11604]) HSP 1 Score: 65.855 bits (159), Expect = 6.032e-10 Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 0 Query: 1 LGLKVEENVLHVLADLGYDPAYGARPLKRALQTAVLNPLATLLLEGR 47 + L++++ L LAD GYDP YGARPLKR +Q A+ NPLATLLLEGR Sbjct: 791 IDLEIDDKALAWLADAGYDPVYGARPLKRVIQRALQNPLATLLLEGR 837
BLAST of EWM21294.1 vs. NCBI_GenBank
Match: gi|916905013|ref|WP_051511726.1| (ATP-dependent chaperone ClpB [Skermanella stibiiresistens] >gi|587641945|gb|EWY40957.1| ATPase AAA [Skermanella stibiiresistens SB22]) HSP 1 Score: 65.4698 bits (158), Expect = 7.989e-10 Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 0 Query: 1 LGLKVEENVLHVLADLGYDPAYGARPLKRALQTAVLNPLATLLLEGR 47 + L++++ L LAD GYDP YGARPLKR +Q A+ NPLAT+LLEGR Sbjct: 791 ITLEIDDKALAWLADAGYDPVYGARPLKRVIQRALQNPLATMLLEGR 837
BLAST of EWM21294.1 vs. NCBI_GenBank
Match: gi|1095023755|emb|SEL47627.1| (ATP-dependent Clp protease ATP-binding subunit ClpB [Duganella sp. CF402]) HSP 1 Score: 65.4698 bits (158), Expect = 8.613e-10 Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = 0 Query: 1 LGLKVEENVLHVLADLGYDPAYGARPLKRALQTAVLNPLATLLLEGR 47 +GL+V E+ LH +A+ GYDP YGARPLKRA+Q + NPL+ L+L+G+ Sbjct: 800 IGLEVSEDALHKIAEAGYDPVYGARPLKRAIQQQIENPLSKLILQGK 846
BLAST of EWM21294.1 vs. NCBI_GenBank
Match: gi|1186153708|ref|WP_085356489.1| (ATP-dependent chaperone ClpB [Neisseria sp. 114725] >gi|1185393447|gb|OSI15327.1| ATP-dependent chaperone ClpB [Neisseria sp. 114725]) HSP 1 Score: 65.0846 bits (157), Expect = 9.572e-10 Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 0 Query: 1 LGLKVEENVLHVLADLGYDPAYGARPLKRALQTAVLNPLATLLLEGRAKAESLLWL 56 L LKV++ L ++A G+DP YGARPLKRA+Q + NPLA LLEG+ + ES++ + Sbjct: 792 LHLKVDDAALDIIAKAGFDPVYGARPLKRAIQAEIENPLAVALLEGKYQPESVIHV 847
BLAST of EWM21294.1 vs. NCBI_GenBank
Match: gi|1186191765|ref|WP_085390499.1| (ATP-dependent chaperone ClpB [Neisseria animaloris] >gi|1185385192|gb|OSI07583.1| ATP-dependent chaperone ClpB [Neisseria animaloris]) HSP 1 Score: 65.0846 bits (157), Expect = 1.044e-9 Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 0 Query: 1 LGLKVEENVLHVLADLGYDPAYGARPLKRALQTAVLNPLATLLLEGRAKAESLLWL 56 L LKV++ L ++A G+DP YGARPLKRA+Q + NPLA LLEG+ + ES++ + Sbjct: 792 LHLKVDDAALDIIAKAGFDPVYGARPLKRAIQAEIENPLAVALLEGKYQPESVIHV 847
BLAST of EWM21294.1 vs. NCBI_GenBank
Match: gi|1054706751|ref|WP_066472467.1| (ATP-dependent chaperone ClpB [Comamonas terrae]) HSP 1 Score: 65.0846 bits (157), Expect = 1.098e-9 Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 0 Query: 1 LGLKVEENVLHVLADLGYDPAYGARPLKRALQTAVLNPLATLLLEGRAKAESLLWLVRMP 60 L L+V + L LA +G+DP +GARPLKRA+Q + NPL+ LLLEG+ +S +W+ P Sbjct: 796 LSLQVPDQALAELAKVGFDPVFGARPLKRAIQQRIENPLSKLLLEGKFPPKSTIWVQADP 855
BLAST of EWM21294.1 vs. NCBI_GenBank
Match: gi|1095252729|emb|SEP16623.1| (AAA domain (Cdc48 subfamily) [Rhodospirillales bacterium URHD0017]) HSP 1 Score: 62.7734 bits (151), Expect = 1.393e-9 Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 0 Query: 1 LGLKVEENVLHVLADLGYDPAYGARPLKRALQTAVLNPLATLLLEGRAK 49 + ++ ++N L LA+ GYDP YGARPLKR +Q ++ NPLAT +LEGR K Sbjct: 97 IDIEFDKNALQWLANRGYDPVYGARPLKRVIQRSLQNPLATQILEGRVK 145
BLAST of EWM21294.1 vs. NCBI_GenBank
Match: gi|1188435682|ref|WP_085555360.1| (ATP-dependent chaperone ClpB [Azospirillum lipoferum] >gi|1184426117|emb|SMH54815.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Azospirillum lipoferum]) HSP 1 Score: 64.6994 bits (156), Expect = 1.438e-9 Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 0 Query: 1 LGLKVEENVLHVLADLGYDPAYGARPLKRALQTAVLNPLATLLLEGRAK 49 + L V+E LAD GYDP YGARPLKR +Q ++ NPLAT++LEGR K Sbjct: 791 ITLAVDEAATQWLADAGYDPVYGARPLKRVIQRSLQNPLATMILEGRVK 839
BLAST of EWM21294.1 vs. NCBI_GenBank
Match: gi|1186160313|ref|WP_085362497.1| (ATP-dependent chaperone ClpB [Neisseria zoodegmatis] >gi|1185389174|gb|OSI11441.1| ATP-dependent chaperone ClpB [Neisseria zoodegmatis]) HSP 1 Score: 64.6994 bits (156), Expect = 1.451e-9 Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 0 Query: 1 LGLKVEENVLHVLADLGYDPAYGARPLKRALQTAVLNPLATLLLEGRAKAESLLWL 56 L LKV++ L ++A G+DP YGARPLKRA+Q + NPLA LLEG+ K ES++ + Sbjct: 792 LHLKVDDAALDLIAKAGFDPVYGARPLKRAIQAEIENPLALALLEGKYKPESVIHV 847 The following BLAST results are available for this feature:
BLAST of EWM21294.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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