EWM21294.1, cds9380 (CDS) Nannochloropsis gaditana

Overview
NameEWM21294.1
Unique Namecds9380
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:201538..201939 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21294.1
Productatp-dependent chaperone protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101345g2.7067.mrna
GbkeyCDS
End range.
End range201939
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:201538..201939 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR019489Clp_ATPase_C
Homology
BLAST of EWM21294.1 vs. NCBI_GenBank
Match: gi|585101465|gb|EWM21294.1| (atp-dependent chaperone protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 245.743 bits (626), Expect = 4.731e-82
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query:    1 LGLKVEENVLHVLADLGYDPAYGARPLKRALQTAVLNPLATLLLEGRAKAESLLWLVRMPRREVREGRDLVIYGKGAIGGEEEGEGEEGLEGLLLGEDVLVCRVVEGGFVEGGEKGGGEEGKEAGREREGEAA 133
            LGLKVEENVLHVLADLGYDPAYGARPLKRALQTAVLNPLATLLLEGRAKAESLLWLVRMPRREVREGRDLVIYGKGAIGGEEEGEGEEGLEGLLLGEDVLVCRVVEGGFVEGGEKGGGEEGKEAGREREGEAA
Sbjct:    1 LGLKVEENVLHVLADLGYDPAYGARPLKRALQTAVLNPLATLLLEGRAKAESLLWLVRMPRREVREGRDLVIYGKGAIGGEEEGEGEEGLEGLLLGEDVLVCRVVEGGFVEGGEKGGGEEGKEAGREREGEAA 133          
BLAST of EWM21294.1 vs. NCBI_GenBank
Match: gi|764607698|ref|WP_044428598.1| (ATP-dependent chaperone ClpB [Skermanella aerolata] >gi|763834951|gb|KJB95403.1| ATPase AAA [Skermanella aerolata KACC 11604])

HSP 1 Score: 65.855 bits (159), Expect = 6.032e-10
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 0
Query:    1 LGLKVEENVLHVLADLGYDPAYGARPLKRALQTAVLNPLATLLLEGR 47
            + L++++  L  LAD GYDP YGARPLKR +Q A+ NPLATLLLEGR
Sbjct:  791 IDLEIDDKALAWLADAGYDPVYGARPLKRVIQRALQNPLATLLLEGR 837          
BLAST of EWM21294.1 vs. NCBI_GenBank
Match: gi|916905013|ref|WP_051511726.1| (ATP-dependent chaperone ClpB [Skermanella stibiiresistens] >gi|587641945|gb|EWY40957.1| ATPase AAA [Skermanella stibiiresistens SB22])

HSP 1 Score: 65.4698 bits (158), Expect = 7.989e-10
Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 0
Query:    1 LGLKVEENVLHVLADLGYDPAYGARPLKRALQTAVLNPLATLLLEGR 47
            + L++++  L  LAD GYDP YGARPLKR +Q A+ NPLAT+LLEGR
Sbjct:  791 ITLEIDDKALAWLADAGYDPVYGARPLKRVIQRALQNPLATMLLEGR 837          
BLAST of EWM21294.1 vs. NCBI_GenBank
Match: gi|1095023755|emb|SEL47627.1| (ATP-dependent Clp protease ATP-binding subunit ClpB [Duganella sp. CF402])

HSP 1 Score: 65.4698 bits (158), Expect = 8.613e-10
Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = 0
Query:    1 LGLKVEENVLHVLADLGYDPAYGARPLKRALQTAVLNPLATLLLEGR 47
            +GL+V E+ LH +A+ GYDP YGARPLKRA+Q  + NPL+ L+L+G+
Sbjct:  800 IGLEVSEDALHKIAEAGYDPVYGARPLKRAIQQQIENPLSKLILQGK 846          
BLAST of EWM21294.1 vs. NCBI_GenBank
Match: gi|1186153708|ref|WP_085356489.1| (ATP-dependent chaperone ClpB [Neisseria sp. 114725] >gi|1185393447|gb|OSI15327.1| ATP-dependent chaperone ClpB [Neisseria sp. 114725])

HSP 1 Score: 65.0846 bits (157), Expect = 9.572e-10
Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 0
Query:    1 LGLKVEENVLHVLADLGYDPAYGARPLKRALQTAVLNPLATLLLEGRAKAESLLWL 56
            L LKV++  L ++A  G+DP YGARPLKRA+Q  + NPLA  LLEG+ + ES++ +
Sbjct:  792 LHLKVDDAALDIIAKAGFDPVYGARPLKRAIQAEIENPLAVALLEGKYQPESVIHV 847          
BLAST of EWM21294.1 vs. NCBI_GenBank
Match: gi|1186191765|ref|WP_085390499.1| (ATP-dependent chaperone ClpB [Neisseria animaloris] >gi|1185385192|gb|OSI07583.1| ATP-dependent chaperone ClpB [Neisseria animaloris])

HSP 1 Score: 65.0846 bits (157), Expect = 1.044e-9
Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 0
Query:    1 LGLKVEENVLHVLADLGYDPAYGARPLKRALQTAVLNPLATLLLEGRAKAESLLWL 56
            L LKV++  L ++A  G+DP YGARPLKRA+Q  + NPLA  LLEG+ + ES++ +
Sbjct:  792 LHLKVDDAALDIIAKAGFDPVYGARPLKRAIQAEIENPLAVALLEGKYQPESVIHV 847          
BLAST of EWM21294.1 vs. NCBI_GenBank
Match: gi|1054706751|ref|WP_066472467.1| (ATP-dependent chaperone ClpB [Comamonas terrae])

HSP 1 Score: 65.0846 bits (157), Expect = 1.098e-9
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 0
Query:    1 LGLKVEENVLHVLADLGYDPAYGARPLKRALQTAVLNPLATLLLEGRAKAESLLWLVRMP 60
            L L+V +  L  LA +G+DP +GARPLKRA+Q  + NPL+ LLLEG+   +S +W+   P
Sbjct:  796 LSLQVPDQALAELAKVGFDPVFGARPLKRAIQQRIENPLSKLLLEGKFPPKSTIWVQADP 855          
BLAST of EWM21294.1 vs. NCBI_GenBank
Match: gi|1095252729|emb|SEP16623.1| (AAA domain (Cdc48 subfamily) [Rhodospirillales bacterium URHD0017])

HSP 1 Score: 62.7734 bits (151), Expect = 1.393e-9
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 0
Query:    1 LGLKVEENVLHVLADLGYDPAYGARPLKRALQTAVLNPLATLLLEGRAK 49
            + ++ ++N L  LA+ GYDP YGARPLKR +Q ++ NPLAT +LEGR K
Sbjct:   97 IDIEFDKNALQWLANRGYDPVYGARPLKRVIQRSLQNPLATQILEGRVK 145          
BLAST of EWM21294.1 vs. NCBI_GenBank
Match: gi|1188435682|ref|WP_085555360.1| (ATP-dependent chaperone ClpB [Azospirillum lipoferum] >gi|1184426117|emb|SMH54815.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Azospirillum lipoferum])

HSP 1 Score: 64.6994 bits (156), Expect = 1.438e-9
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 0
Query:    1 LGLKVEENVLHVLADLGYDPAYGARPLKRALQTAVLNPLATLLLEGRAK 49
            + L V+E     LAD GYDP YGARPLKR +Q ++ NPLAT++LEGR K
Sbjct:  791 ITLAVDEAATQWLADAGYDPVYGARPLKRVIQRSLQNPLATMILEGRVK 839          
BLAST of EWM21294.1 vs. NCBI_GenBank
Match: gi|1186160313|ref|WP_085362497.1| (ATP-dependent chaperone ClpB [Neisseria zoodegmatis] >gi|1185389174|gb|OSI11441.1| ATP-dependent chaperone ClpB [Neisseria zoodegmatis])

HSP 1 Score: 64.6994 bits (156), Expect = 1.451e-9
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 0
Query:    1 LGLKVEENVLHVLADLGYDPAYGARPLKRALQTAVLNPLATLLLEGRAKAESLLWL 56
            L LKV++  L ++A  G+DP YGARPLKRA+Q  + NPLA  LLEG+ K ES++ +
Sbjct:  792 LHLKVDDAALDLIAKAGFDPVYGARPLKRAIQAEIENPLALALLEGKYKPESVIHV 847          
The following BLAST results are available for this feature:
BLAST of EWM21294.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101465|gb|EWM21294.1|4.731e-82100.00atp-dependent chaperone protein, partial [Nannochl... [more]
gi|764607698|ref|WP_044428598.1|6.032e-1063.83ATP-dependent chaperone ClpB [Skermanella aerolata... [more]
gi|916905013|ref|WP_051511726.1|7.989e-1061.70ATP-dependent chaperone ClpB [Skermanella stibiire... [more]
gi|1095023755|emb|SEL47627.1|8.613e-1057.45ATP-dependent Clp protease ATP-binding subunit Clp... [more]
gi|1186153708|ref|WP_085356489.1|9.572e-1051.79ATP-dependent chaperone ClpB [Neisseria sp. 114725... [more]
gi|1186191765|ref|WP_085390499.1|1.044e-951.79ATP-dependent chaperone ClpB [Neisseria animaloris... [more]
gi|1054706751|ref|WP_066472467.1|1.098e-948.33ATP-dependent chaperone ClpB [Comamonas terrae][more]
gi|1095252729|emb|SEP16623.1|1.393e-955.10AAA domain (Cdc48 subfamily) [Rhodospirillales bac... [more]
gi|1188435682|ref|WP_085555360.1|1.438e-959.18ATP-dependent chaperone ClpB [Azospirillum lipofer... [more]
gi|1186160313|ref|WP_085362497.1|1.451e-953.57ATP-dependent chaperone ClpB [Neisseria zoodegmati... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9410rna9410Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications