EWM21306.1, cds9367 (CDS) Nannochloropsis gaditana

Overview
NameEWM21306.1
Unique Namecds9367
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:171487..171667 +
Alignment locationKK037253.1:171810..172462 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21306.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100350g5.4392.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:171487..171667 +
KK037253.1supercontigKK037253.1:171810..172462 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM21306.1 vs. NCBI_GenBank
Match: gi|585101485|gb|EWM21306.1| (hypothetical protein Naga_100350g5 [Nannochloropsis gaditana])

HSP 1 Score: 567 bits (1460), Expect = 0.000e+0
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0
Query:    1 MGIFNNIINDIAEEPWLIPESPEREDFLFFRGSSHRSISMYRCLIASYWSIWILISILGSVGVPLPDALFGSMDNDMGEKWLIFLTNWSMVLLGTYLWTAFAASLYTDHSPRLLQTVWVLRNCTAVAALVVSLLFWCVLFPAIKKTSWTDVHCHAVNSFLVLLDLTLTHVPYYFKHGWMPFLYLVLYLLFSVVYWAEGGTDPEGDPYIYEPLDYDHPGAATGLVLAVVFLVVPFVHVSLYAYTRCLSQGLCQACFGEGGKMGRREGARTDRLPLLPA 277
            MGIFNNIINDIAEEPWLIPESPEREDFLFFRGSSHRSISMYRCLIASYWSIWILISILGSVGVPLPDALFGSMDNDMGEKWLIFLTNWSMVLLGTYLWTAFAASLYTDHSPRLLQTVWVLRNCTAVAALVVSLLFWCVLFPAIKKTSWTDVHCHAVNSFLVLLDLTLTHVPYYFKHGWMPFLYLVLYLLFSVVYWAEGGTDPEGDPYIYEPLDYDHPGAATGLVLAVVFLVVPFVHVSLYAYTRCLSQGLCQACFGEGGKMGRREGARTDRLPLLPA
Sbjct:    1 MGIFNNIINDIAEEPWLIPESPEREDFLFFRGSSHRSISMYRCLIASYWSIWILISILGSVGVPLPDALFGSMDNDMGEKWLIFLTNWSMVLLGTYLWTAFAASLYTDHSPRLLQTVWVLRNCTAVAALVVSLLFWCVLFPAIKKTSWTDVHCHAVNSFLVLLDLTLTHVPYYFKHGWMPFLYLVLYLLFSVVYWAEGGTDPEGDPYIYEPLDYDHPGAATGLVLAVVFLVVPFVHVSLYAYTRCLSQGLCQACFGEGGKMGRREGARTDRLPLLPA 277          
BLAST of EWM21306.1 vs. NCBI_GenBank
Match: gi|919090405|ref|XP_013382251.1| (PREDICTED: protein rolling stone-like [Lingula anatina])

HSP 1 Score: 100.908 bits (250), Expect = 1.656e-21
Identity = 61/175 (34.86%), Postives = 87/175 (49.71%), Query Frame = 0
Query:   78 GEKWLIFLTNWSMVLLGTYLWTAFAASLYTDHS----------PRLLQTVWVLRNCTAVAALVVSLLFWCVLFPAIKKTSWTDVHCHAVNSFLVLLDLTLTHVPYYFKHGWMPFLYLVLYLLFSVVYWAEGGTDPEGDPYIYEPLDYDHP-GAATGLVLAVVFLVVPFVHVSLYA 241
            G K+ IFLT WS +LL       F  S+   +           P  L+ VWV  N +  AA V+++L+W   +   K  +  +V  HAVNS    +D+ +T +P    H   P +Y   YL+F+ +YWA GG +  G  YIY  LDY +  G A G  L  VF+ VP V + L+ 
Sbjct:   77 GPKYFIFLTYWSFILLNVNTLLLFITSVIGYYKFKRAQVYLEMPWYLKMVWVFYNVSTQAAFVITVLYWVFEYNTSKTLNIVNVTTHAVNSVFAFIDMLVTAIPIRILHAPGPMIYGATYLIFAPIYWAAGGLNEHGGTYIYPLLDYGNKLGLAIGSSLGTVFVAVPLVQLLLFG 251          
BLAST of EWM21306.1 vs. NCBI_GenBank
Match: gi|585110694|gb|EWM28341.1| (hypothetical protein Naga_100367g4 [Nannochloropsis gaditana])

HSP 1 Score: 100.523 bits (249), Expect = 5.687e-21
Identity = 65/200 (32.50%), Postives = 98/200 (49.00%), Query Frame = 0
Query:   41 YRCLIASYWSIWILISILGSVGVPLPDALFGSMDNDMGEKWLIFLTNWSMVLLGTYLWTAFAASLYTDHSPR---LLQTVWVLRNCTAVAALVVSLLFWCVLFPAIKKTSWTDVHCHAVNSFLVLLDLTLTHVPYYFKHGWMPFLYLVLYLLFSVVYWAEGGTDPEGDPYIYEPLDYDHPGAATGLVLAVVFLVVPFVHV 237
            YR +   YWS W+L S LG  G P                W +++TNW+  ++G Y W AF A L     PR   L +  W L +     +++V L++W + FP +   S   VH H VN+ L+++DL L   PY+ KH      ++  Y++F+ VYW   G        +Y PLDY HP  A   ++   F++ P VH+
Sbjct:   48 YRLVFLLYWSFWVLYSALGGDGPPT-------------SWWCVYVTNWTAAVMGGYAWGAFLAILI----PRAFFLDRATWFLHDIATPLSIMVCLMYW-LAFP-VPPISGIIVHLHGVNALLMVMDLALARYPYHLKHFLPACGFMACYVVFNGVYWRAAGN------VVYTPLDYTHPFLAATALVGTFFIIFPIVHL 222          
BLAST of EWM21306.1 vs. NCBI_GenBank
Match: gi|390347443|ref|XP_003726784.1| (PREDICTED: protein rolling stone [Strongylocentrotus purpuratus])

HSP 1 Score: 97.8265 bits (242), Expect = 2.136e-20
Identity = 57/164 (34.76%), Postives = 92/164 (56.10%), Query Frame = 0
Query:   77 MGEKWLIFLTNWSMVLLGTYLWTAFAASLYTDHSPRL----------LQTVWVLRNCTAVAALVVSLLFWCVLFPAIKKT--SWTDVHCHAVNSFLVLLDLTLTHVPYYFKHGWMPFLYLVLYLLFSVVYWAEGGTDPEGDPYIYEPLDY-DHPGAATGLVLAV 227
            +G K+LI+LT+W+ +++  Y   A   +L T     +           Q  W L N +A  +L+V++++W  L P + +    + DV  H + + + L+D+ LT V   F H   PF YL  YLLF+V+YWA GGTDP G+P+IY  +D+ ++PG +   V+ V
Sbjct:   66 LGVKFLIYLTDWTYIVVTLYAMVACFNTLTTKSCYCIGGCIGKGIFRKQVQWFLLNISAAVSLIVTVVYWTALRPLMSEKLPVYLDVTIHLLPAVICLVDILLTTVIVRFVHVVYPFAYLFFYLLFAVIYWAAGGTDPAGNPFIYPIIDFGNYPGISVASVIGV 229          
BLAST of EWM21306.1 vs. NCBI_GenBank
Match: gi|919003822|ref|XP_013419746.1| (PREDICTED: protein rolling stone-like [Lingula anatina])

HSP 1 Score: 98.2117 bits (243), Expect = 2.672e-20
Identity = 77/242 (31.82%), Postives = 118/242 (48.76%), Query Frame = 0
Query:   20 ESPEREDFLFFRGSSHRSISMYRCLIASYWSIWILISILGSVGVPLPDALFGSMDNDMGEKWLIFLTNWSMVLL--GTYLWTAFAASLYTDHSPR----------LLQTVWVLRNCTAVAALVVSLLFWCVLFPAIKKTS----WTDVHCHAVNSFLVLLDLTLTHVPYYFKHGWMPFLYLVLYLLFSVVYWAEGGTDPEGDPYIYEPLDY-DHPGAATGLVLAVVFLVVPFVHVSLYAYTR 244
            ESPE   F   +G    +  +YR + A +   WI++S     GV +P + + S  N +  KW I+LTNWS ++L     +  A A + Y +               L+  WV+ N ++ AA+VV+ LFW ++FPA   T     + DV  H  N+  VL+D+ +T  P    H   PFL+ V +L+FS +Y    GT+     YIY  LD+  + G+A    + V  + +P V   LY   R
Sbjct:   61 ESPEL--FATAQGGFGIAYVIYRVIWALFHVTWIILS-----GV-IPYSWYSSESNRI--KWFIYLTNWSYLILTVSAIMQAAVAINHYVERRKHGGVPYPAMTWYLKMAWVIYNISSNAAIVVTALFWGLIFPAYLATGTEVHYIDVGTHGGNTLYVLIDIFITATPVRIYHFLHPFLFGVTFLVFSAIYDVTNGTNALDKEYIYSVLDWTSNAGSAAMYAVLVALVAIPLVQCVLYGLYR 292          
BLAST of EWM21306.1 vs. NCBI_GenBank
Match: gi|919019740|ref|XP_013393890.1| (PREDICTED: protein rolling stone-like [Lingula anatina])

HSP 1 Score: 97.0561 bits (240), Expect = 6.936e-20
Identity = 79/268 (29.48%), Postives = 124/268 (46.27%), Query Frame = 0
Query:   20 ESPEREDFLFFRGSSHRSISMYRCLIASYWSIWILISILGSVGVPLPDALFGSMDNDMGEKWLIFLTNWSMVLL--GTYLWTAFAASLYTDHSPR----------LLQTVWVLRNCTAVAALVVSLLFWCVLFPAIKKTS----WTDVHCHAVNSFLVLLDLTLTHVPYYFKHGWMPFLYLVLYLLFSVVYWAEGGTDPEGDPYIYEPLDY-DHPGAATGLVLAVVFLVVPFVHVSLYAYTRCLSQGLCQACFGEGGKMGRREGARTD 270
            ESPE   F   +G    +  +YR + A +   WI++S     GV +P + + S  N +  KW I+LTNWS ++L     +  A A + Y +               L+  WV+ N ++ AA+VV+ LFW ++FPA   T     + DV  H  N+  VL+D+ +T  P    H   PFL+   +L+FS +Y    GT+     YIY  LD+  + G+A    + V  + +P V   LY   R  +      C    G +    G + +
Sbjct:   61 ESPEL--FATAQGGFGIAYVIYRVIWALFHVTWIILS-----GV-IPYSWYSSEPNRV--KWFIYLTNWSYLILTVSAIMQAAVAINHYVERRKHGGVPYPAMTWYLKMAWVIYNISSNAAIVVTALFWGLIFPAYLATGTELHYIDVGTHGGNTLYVLIDIFITATPVRIYHFLHPFLFGATFLVFSAIYDVTNGTNALDKEYIYSVLDWTSNAGSAAMYAVLVALVAIPLVQCVLYGLYRLRTALYGCCCPRSVGPLDNESGDKQE 318          
BLAST of EWM21306.1 vs. NCBI_GenBank
Match: gi|156366219|ref|XP_001627037.1| (predicted protein [Nematostella vectensis] >gi|156213934|gb|EDO34937.1| predicted protein [Nematostella vectensis])

HSP 1 Score: 94.7449 bits (234), Expect = 1.049e-19
Identity = 69/232 (29.74%), Postives = 115/232 (49.57%), Query Frame = 0
Query:   40 MYRCLIASYWSIWILISILGSVGVPLPDALFGSMDNDMGEKWLIFLTNWSMVLLGTYLWTAFAASL----------------YTDHSPRLLQTVWVLRNCTAVAALVVSLLFWCVLFPAIKKTSWTDVHCHAVNSFLVLLDLTLTHVPYYFKHGWMPFLYLVLYLLFSVVYWAEGGTDPEGDPYIYEPLDY-DHPGAATGLVLAVVFLVVPFVHVSLYA--YTRC-LSQGLC 251
            ++R L+A+Y + W++ S              G  + +   KW I+LTNW  +L   Y   A A +L                ++D        +W+L N  A  A+++S+++W  +   I      DV  HA+N+  ++L+L L+ +P    H   P ++ + Y++F+VVYWA GGT+    PYIY  +DY D PG A G++L  + +++P VH   +     RC LS+  C
Sbjct:    3 VFRFLVAAYNTGWLIYS--------------GFHEANGKTKWFIYLTNWGYLLETVYFIYASAVTLWFHIREKKNKDQSDFNFSDLMRYHHSLMWILFNIAADTAVLISIIYWGWMVGPIDGL---DVSTHALNTVFMILELVLSKLPIRLLHCIYPLVFGLCYMIFTVVYWAAGGTNANNKPYIYSIVDYKDSPGMAVGILLGALLVLLPIVHSVFFGVYKLRCYLSERSC 217          
BLAST of EWM21306.1 vs. NCBI_GenBank
Match: gi|1135098955|ref|XP_019890326.1| (PREDICTED: protein rolling stone [Musca domestica])

HSP 1 Score: 96.2857 bits (238), Expect = 1.140e-19
Identity = 59/178 (33.15%), Postives = 93/178 (52.25%), Query Frame = 0
Query:   68 ALFGSMDNDMGE-KWLIFLTNWSMVL------LGTYLWTAFA-ASLYTDHSPRLLQTVWVLRNCTAVAALVVSLLFWCVLFPAIKKTSWTDVH---CHAVNSFLVLLDLTLTHVPYYFKHGWMPFLYLVLYLLFSVVYWAEGGTDPEGDPYIYEPLDYDHPGAATGLVLAVVFLVVPF 234
             + GS+    G  +W I+LT+W  +L       G  L T +   S Y D+ P++L+  W    C  V A V++ ++W  +FP     + +D++    H  NS L++LD  L   P    H   P +  ++Y +FS++Y+  GG D  G+PYIYE LD+  PG AT ++   + LVV F
Sbjct:   96 GVLGSLIQQFGAGRWFIYLTDWGFLLCMYISWFGAILVTIYHFNSTYFDNKPKVLKVYWCSHWCVLVVATVITFMYWLFIFPNDNANA-SDLYNLWAHGFNSILMVLDHMLVAFPTRLLHVVYPLILGLVYAIFSLIYYLAGGVDVNGNPYIYEILDWSQPGWATLMIFGCLVLVVIF 272          
BLAST of EWM21306.1 vs. NCBI_GenBank
Match: gi|1207908858|ref|XP_021364743.1| (protein rolling stone-like [Mizuhopecten yessoensis] >gi|1205909580|gb|OWF55579.1| Protein rolling stone [Mizuhopecten yessoensis])

HSP 1 Score: 95.9005 bits (237), Expect = 3.043e-19
Identity = 61/202 (30.20%), Postives = 94/202 (46.53%), Query Frame = 0
Query:   67 DALFGSMDNDMGEKWLIFLTNWSMVLLGTYLWTAFAASLY------------TDHSPRLLQTVWVLRNCTAVAALVVSLLFWCVLFPAIKKTSWTDVHCHAVNSFLVLLDLTLTHVPYYFKHGWMPFLYLVLYLLFSVVYWAEGGTDPEGDPYIYEPLDYDHPGAATGLVLAVVFLVVPFVHVSLYAYTRCLSQGLCQACFG 256
            D  F + D      +  FLTNW  + L +Y W   AAS+Y             D  P  L+ +WVL N     AL++ LL+W ++  ++   S   +  HA+N   VL ++  T  P    H + P L   +Y +FS++Y   GG        IY+ LD+D PGA  GLVL ++ + +P  H+  +   +  +    Q C G
Sbjct:   88 DMYFAATDEQDDGHYFKFLTNWGYLFLVSYQWLDTAASVYIHLRRKELIKGGQDSMPWYLKVIWVLYNIANSLALIIVLLYWMLIGSSLHPKS---ISKHALNGMCVLFNICFTATPIRVWHFYQPVLVCFVYAIFSIIYQQAGGG------LIYDMLDWDKPGATIGLVLPLLVVGMPLAHLCFFGIYKARTDIAKQCCTG 280          
BLAST of EWM21306.1 vs. NCBI_GenBank
Match: gi|871208437|ref|XP_012940198.1| (PREDICTED: protein rolling stone-like isoform X2 [Aplysia californica] >gi|871208440|ref|XP_012940203.1| PREDICTED: protein rolling stone-like isoform X2 [Aplysia californica])

HSP 1 Score: 94.3597 bits (233), Expect = 3.941e-19
Identity = 50/137 (36.50%), Postives = 83/137 (60.58%), Query Frame = 0
Query:  109 HSPRLLQTVWVLRNCTAVAALVVSLLFWCVLFPAIKKTSWTDVHCHAVNSFLVLLDLTLTHVPYYFKHGWMPFLYLVLYLLFSVVYWAEGGTDPEGDPYIYEPLDYD-HPGAATGLVLAVVFLVVPFVHVSLYAYTR 244
            H P  L   W+L+N +   +L+V++LFW +++  + +T +  ++ HA+NS LVL D+ L+  P +  H  MP +YL++Y+ F+++YWA  GT+  G+PYIY  LDY   P  A  +++ V  ++VP   V L    R
Sbjct:  111 HLPPGLALQWLLQNISNSVSLLVTVLFWALVYTGVHQT-YMSINSHAINSLLVLADVMLSAAPIHMLHFHMPLVYLMIYIAFTLIYWAGNGTNHRGEPYIYSVLDYSGKPKVAIVVIVCVALIIVPLTQVLLCGLRR 246          
The following BLAST results are available for this feature:
BLAST of EWM21306.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101485|gb|EWM21306.1|0.000e+0100.00hypothetical protein Naga_100350g5 [Nannochloropsi... [more]
gi|919090405|ref|XP_013382251.1|1.656e-2134.86PREDICTED: protein rolling stone-like [Lingula ana... [more]
gi|585110694|gb|EWM28341.1|5.687e-2132.50hypothetical protein Naga_100367g4 [Nannochloropsi... [more]
gi|390347443|ref|XP_003726784.1|2.136e-2034.76PREDICTED: protein rolling stone [Strongylocentrot... [more]
gi|919003822|ref|XP_013419746.1|2.672e-2031.82PREDICTED: protein rolling stone-like [Lingula ana... [more]
gi|919019740|ref|XP_013393890.1|6.936e-2029.48PREDICTED: protein rolling stone-like [Lingula ana... [more]
gi|156366219|ref|XP_001627037.1|1.049e-1929.74predicted protein [Nematostella vectensis] >gi|156... [more]
gi|1135098955|ref|XP_019890326.1|1.140e-1933.15PREDICTED: protein rolling stone [Musca domestica][more]
gi|1207908858|ref|XP_021364743.1|3.043e-1930.20protein rolling stone-like [Mizuhopecten yessoensi... [more]
gi|871208437|ref|XP_012940198.1|3.941e-1936.50PREDICTED: protein rolling stone-like isoform X2 [... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9397rna9397Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications