EWM21351.1, cds9337 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21351.1 vs. NCBI_GenBank
Match: gi|585101536|gb|EWM21351.1| (exosome complex exonuclease rrp45 [Nannochloropsis gaditana]) HSP 1 Score: 1214.13 bits (3140), Expect = 0.000e+0 Identity = 597/597 (100.00%), Postives = 597/597 (100.00%), Query Frame = 0
Query: 1 MSVIKQGEDMSINEREFILTALKDENCRADGRTPADTRELRVTYARAEGQATAEIQLGKTRVLTVVTSELTPPYPDRPAEGFLNLNVEYSPMATLGIDNARTNPTLVEVDRVIERCLRQSRALDTEALCVIAGSKVWSLRCDVRILDDAGNVVDAACLATVAALMHFRLPEVTVLTGGSDERSNSSANDGESSEPSALPIHHVPICVTFVLFNTSPIVSVIDPTEREELVMGGRITFSINVHREVCAMQKIGGLALAPTSLARLAEIAMEKVGDWHSLLQTSLEAADSQAKAERLRCVRGTASMHVRRGALGDAEGERGEKEVEGGADAPTSHIETAHLDFAELHAPIKVREGSEKPPIDEEEETRTLSVLEQAALDAEDYRMKQGTKNLTQGTQETQFSWTGAATRNSDTGAVAGLTDSVVTESTGVNDVRTAACPGSTAETAPTSHRSSMETKPAGARELGRKTKTLGRRMDVRNGEGRDTEEEDDEEEGDAVMMVSEFASSTESSLGTPYDKTAIAATGSNARRPSSQGAPQATATTERAENDDEEIKDLRDAVKKPRVRGQNGSSSGRGAAKRPSGTSSTGTSKNRPKVGTKR 597
MSVIKQGEDMSINEREFILTALKDENCRADGRTPADTRELRVTYARAEGQATAEIQLGKTRVLTVVTSELTPPYPDRPAEGFLNLNVEYSPMATLGIDNARTNPTLVEVDRVIERCLRQSRALDTEALCVIAGSKVWSLRCDVRILDDAGNVVDAACLATVAALMHFRLPEVTVLTGGSDERSNSSANDGESSEPSALPIHHVPICVTFVLFNTSPIVSVIDPTEREELVMGGRITFSINVHREVCAMQKIGGLALAPTSLARLAEIAMEKVGDWHSLLQTSLEAADSQAKAERLRCVRGTASMHVRRGALGDAEGERGEKEVEGGADAPTSHIETAHLDFAELHAPIKVREGSEKPPIDEEEETRTLSVLEQAALDAEDYRMKQGTKNLTQGTQETQFSWTGAATRNSDTGAVAGLTDSVVTESTGVNDVRTAACPGSTAETAPTSHRSSMETKPAGARELGRKTKTLGRRMDVRNGEGRDTEEEDDEEEGDAVMMVSEFASSTESSLGTPYDKTAIAATGSNARRPSSQGAPQATATTERAENDDEEIKDLRDAVKKPRVRGQNGSSSGRGAAKRPSGTSSTGTSKNRPKVGTKR
Sbjct: 1 MSVIKQGEDMSINEREFILTALKDENCRADGRTPADTRELRVTYARAEGQATAEIQLGKTRVLTVVTSELTPPYPDRPAEGFLNLNVEYSPMATLGIDNARTNPTLVEVDRVIERCLRQSRALDTEALCVIAGSKVWSLRCDVRILDDAGNVVDAACLATVAALMHFRLPEVTVLTGGSDERSNSSANDGESSEPSALPIHHVPICVTFVLFNTSPIVSVIDPTEREELVMGGRITFSINVHREVCAMQKIGGLALAPTSLARLAEIAMEKVGDWHSLLQTSLEAADSQAKAERLRCVRGTASMHVRRGALGDAEGERGEKEVEGGADAPTSHIETAHLDFAELHAPIKVREGSEKPPIDEEEETRTLSVLEQAALDAEDYRMKQGTKNLTQGTQETQFSWTGAATRNSDTGAVAGLTDSVVTESTGVNDVRTAACPGSTAETAPTSHRSSMETKPAGARELGRKTKTLGRRMDVRNGEGRDTEEEDDEEEGDAVMMVSEFASSTESSLGTPYDKTAIAATGSNARRPSSQGAPQATATTERAENDDEEIKDLRDAVKKPRVRGQNGSSSGRGAAKRPSGTSSTGTSKNRPKVGTKR 597
BLAST of EWM21351.1 vs. NCBI_GenBank
Match: gi|553188798|ref|XP_005854866.1| (exosome complex component RRP45 [Nannochloropsis gaditana CCMP526] >gi|422294192|gb|EKU21492.1| exosome complex component RRP45 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 1193.72 bits (3087), Expect = 0.000e+0 Identity = 594/620 (95.81%), Postives = 595/620 (95.97%), Query Frame = 0
Query: 1 MSVIKQGEDMSINEREFILTALKDENCRADGRTPADTRELRVTYARAEGQATAEIQLGKTRVLTVVTSELTPPYPDRPAEGFLNLNVEYSPMATLGIDNARTNPTLVEVDRVIERCLRQSRALDTEALCVIAGSKVWSLRCDVRILDDAGNVVDAACLATVAALMHFRLPEVTVLTGGSDERSNSSANDGESS-----------------------EPSALPIHHVPICVTFVLFNTSPIVSVIDPTEREELVMGGRITFSINVHREVCAMQKIGGLALAPTSLARLAEIAMEKVGDWHSLLQTSLEAADSQAKAERLRCVRGTASMHVRRGALGDAEGERGEKEVEGGADAPTSHIETAHLDFAELHAPIKVREGSEKPPIDEEEETRTLSVLEQAALDAEDYRMKQGTKNLTQGTQETQFSWTGAATRNSDTGAVAGLTDSVVTESTGVNDVRTAACPGSTAETAPTSHRSSMETKPAGARELGRKTKTLGRRMDVRNGEGRDTEEEDDEEEGDAVMMVSEFASSTESSLGTPYDKTAIAATGSNARRPSSQGAPQATATTERAENDDEEIKDLRDAVKKPRVRGQNGSSSGRGAAKRPSGTSSTGTSKNRPKVGTKR 597
MSVIKQGEDMSINEREFILTALKDENCRADGRTPADTRELRVTYARAEGQATAEIQLGKTRVLTVVTSELTPPYPDRPAEGFLNLNVEYSPMATLGIDNARTNPTLVEVDRVIERCLRQSRALDTEALCVIAGSKVWSLRCDVRILDDAGNVVDAACLATVAALMHFRLPEVTVLTGGSDERSNSSANDGESS EPSALPIHHVPICVTFVLFNTSPIVSVIDPTEREELVMGGRITFSINVHREVCAMQKIGGLALAPTSLARLAEIAMEKVGDWHSLLQTSLEAADSQAKAERLRCVRGTASMHVRRGALGDAEGERGEKEVEGGADAPTSHIETAHLDFAELHAPIKVREGSEK PIDEEEETRTLSVLEQAALDAEDYRMKQGTKNLTQGTQETQFSWTGAATRNSDTGAVAGLTDSVVTESTGVNDVRTAACPGSTA+TAPTSHRSSMETKPAGARELGRKTKTLGRRMDVRNGEGRDTEEEDDEEEGDAVMMVSEFASSTESSLGTPYDKTAIAATGSNARRPSSQGAPQATATTERAENDDEEIKDLRDAVKKPRVRGQNGSSSGRGAAKRPSGTSSTGTSKNRPK GTKR
Sbjct: 1 MSVIKQGEDMSINEREFILTALKDENCRADGRTPADTRELRVTYARAEGQATAEIQLGKTRVLTVVTSELTPPYPDRPAEGFLNLNVEYSPMATLGIDNARTNPTLVEVDRVIERCLRQSRALDTEALCVIAGSKVWSLRCDVRILDDAGNVVDAACLATVAALMHFRLPEVTVLTGGSDERSNSSANDGESSVGRVRGGGGLGHASVVVHHSFEKEPSALPIHHVPICVTFVLFNTSPIVSVIDPTEREELVMGGRITFSINVHREVCAMQKIGGLALAPTSLARLAEIAMEKVGDWHSLLQTSLEAADSQAKAERLRCVRGTASMHVRRGALGDAEGERGEKEVEGGADAPTSHIETAHLDFAELHAPIKVREGSEKAPIDEEEETRTLSVLEQAALDAEDYRMKQGTKNLTQGTQETQFSWTGAATRNSDTGAVAGLTDSVVTESTGVNDVRTAACPGSTAQTAPTSHRSSMETKPAGARELGRKTKTLGRRMDVRNGEGRDTEEEDDEEEGDAVMMVSEFASSTESSLGTPYDKTAIAATGSNARRPSSQGAPQATATTERAENDDEEIKDLRDAVKKPRVRGQNGSSSGRGAAKRPSGTSSTGTSKNRPKGGTKR 620
BLAST of EWM21351.1 vs. NCBI_GenBank
Match: gi|1032648458|gb|OAQ29751.1| (hypothetical protein K457DRAFT_485177 [Mortierella elongata AG-77]) HSP 1 Score: 246.128 bits (627), Expect = 1.533e-73 Identity = 130/277 (46.93%), Postives = 174/277 (62.82%), Query Frame = 0
Query: 9 DMSINEREFILTALKDENCRADGRTPADTRELRVTYARAEGQATAEIQLGKTRVLTVVTSELTPPYPDRPAEGFLNLNVEYSPMATLGIDNARTNPTLVEVDRVIERCLRQSRALDTEALCVIAGSKVWSLRCDVRILDDAGNVVDAACLATVAALMHFRLPEVTVLTGGSDERSNSSANDGESSEPSALPIHHVPICVTFVLFNTSPIVSVIDPTEREELVMGGRITFSINVHREVCAMQKIGGLALAPTSLARLAEIAMEKVGDWHSLLQTSLEA 285
D S NEREF+L ALKD R DGR D R LR+T+ G E+QLG TRVL V+ E+ PY D+P EGFL N E SPMA+ + R V V R+IE+ +R+SRALDTE LC++AG KVWS+R D+ LD GN+VDAAC+A + AL+HFR P+VTV+ G D + + E P L IHH+PIC TF FN + V+DPT EE V G +T ++NVH+EVCA+ K GG+ + + + ++A+ KV + + +Q +LEA
Sbjct: 5 DPSTNEREFLLAALKD-GARIDGRKFYDFRTLRLTFGAEYG--AVEVQLGNTRVLAKVSCEVIRPYTDKPTEGFLMFNTELSPMASAAFEVGRQTDEEVLVSRLIEKAMRRSRALDTEGLCIVAGEKVWSIRVDIHFLDHDGNLVDAACIAAITALLHFRRPDVTVV--GED----VTIHTLEQRNPVPLSIHHIPICTTFAFFNNGERM-VVDPTFLEEQVKEGDMTITLNVHKEVCALSKAGGIPMEIDQILQCTKVAVVKVAEITAQIQAALEA 271
BLAST of EWM21351.1 vs. NCBI_GenBank
Match: gi|672827680|gb|KFH72570.1| (exosome complex component RRP45 [Mortierella verticillata NRRL 6337]) HSP 1 Score: 243.817 bits (621), Expect = 1.120e-72 Identity = 126/284 (44.37%), Postives = 176/284 (61.97%), Query Frame = 0
Query: 11 SINEREFILTALKDENCRADGRTPADTRELRVTYARAEGQATAEIQLGKTRVLTVVTSELTPPYPDRPAEGFLNLNVEYSPMATLGIDNARTNPTLVEVDRVIERCLRQSRALDTEALCVIAGSKVWSLRCDVRILDDAGNVVDAACLATVAALMHFRLPEVTVLTGGSDERSNSSANDGESSEPSALPIHHVPICVTFVLFNTSPIVSVIDPTEREELVMGGRITFSINVHREVCAMQKIGGLALAPTSLARLAEIAMEKVGDWHSLLQTSLEAADSQAKAER 294
S NEREF+L ALKD R DGR D R LR+++ G E+QLG TRVL V+ E+ PY D+P EGFL N E SPMA+ + R V V R+IE+ +R+SRALDTE LC++AG KVWS+R D+ LD GN+VDAAC+A + AL+HFR P+VTV+ + + E P L IHH+PIC TF F+ + ++DPT EE + G +T ++NVH+EVCAM K GG+ + + + ++IA+ KV + + +Q++LEA + + R
Sbjct: 7 STNEREFVLAALKD-GARIDGRKFYDFRTLRLSFGADYG--AVEVQLGNTRVLAKVSCEVIRPYADKPTEGFLVFNTELSPMASASFEVGRQTDEEVLVSRLIEKAMRRSRALDTEGLCIVAGEKVWSVRVDIHFLDHDGNLVDAACIAAITALLHFRRPDVTVVG------EEVTIHTLEQRNPVPLSIHHIPICTTFAFFDNGERM-IVDPTYLEEQIKEGDMTLTLNVHKEVCAMSKAGGIPMEIDQILQCSKIAVIKVAEITAQIQSALEADAKKRQVSR 280
BLAST of EWM21351.1 vs. NCBI_GenBank
Match: gi|1183493181|gb|ORZ16853.1| (ribosomal protein S5 domain 2-type protein [Lobosporangium transversale]) HSP 1 Score: 240.736 bits (613), Expect = 1.600e-71 Identity = 126/281 (44.84%), Postives = 179/281 (63.70%), Query Frame = 0
Query: 11 SINEREFILTALKDENCRADGRTPADTRELRVTYARAEGQATAEIQLGKTRVLTVVTSELTPPYPDRPAEGFLNLNVEYSPMATLGIDNARTNPTLVEVDRVIERCLRQSRALDTEALCVIAGSKVWSLRCDVRILDDAGNVVDAACLATVAALMHFRLPEVTVLTGGSDERSNSSANDGESSEPSALPIHHVPICVTFVLFNTSPIVSVIDPTEREELVMGGRITFSINVHREVCAMQKIGGLALAPTSLARLAEIAMEKVGDWHSLLQTSLEAADSQAK 291
S NEREF+L AL+D R DGR D R LR+++ G E+QLG TRVL V+ E+ P+PD+P EGFL N E SPMA+ + R V V R+IE+ +++SRALDTE LC++AG KVWS+R D+ LD GN+VDAAC+A + AL HFR P+VTV+ G D + + E P L IHH+PICVTF F+ V ++DPT EE + G +T ++NVH+EVCA+ K GG+ + + + ++IA+ KV + + ++ +L AAD++ +
Sbjct: 7 STNEREFVLAALRD-GARIDGRNFYDFRTLRLSFGADYG--AVEVQLGNTRVLAKVSCEVIRPFPDKPTEGFLMFNTELSPMASPAFEVGRQTDEEVLVSRLIEKAMKRSRALDTEGLCIVAGEKVWSIRVDIHFLDHDGNLVDAACIAAITALQHFRRPDVTVV--GED----VTIHTLEQRNPVPLSIHHIPICVTFAFFDNGNHV-IVDPTHLEEQIKEGDMTITLNVHKEVCALSKAGGIPMELDQIIQCSKIAVIKVAEITAQIEAAL-AADAKKR 276
BLAST of EWM21351.1 vs. NCBI_GenBank
Match: gi|831781914|ref|XP_012756515.1| (hypothetical protein SAMD00019534_029280 [Acytostelium subglobosum LB1] >gi|735857147|dbj|GAM19753.1| hypothetical protein SAMD00019534_029280 [Acytostelium subglobosum LB1]) HSP 1 Score: 244.973 bits (624), Expect = 1.187e-70 Identity = 121/304 (39.80%), Postives = 198/304 (65.13%), Query Frame = 0
Query: 8 EDMSINEREFILTALKDENCRADGRTPADTRELRVTYARAEGQATAEIQLGKTRVLTVVTSELTPPYPDRPAEGFLNLNVEYSPMATLGIDNARTNPTLVEVDRVIERCLRQSRALDTEALCVIAGSKVWSLRCDVRILDDAGNVVDAACLATVAALMHFRLPEVTVLTGGSDERSNSSANDGESSEPSALPIHHVPICVTFVLFNTSPIVSVIDPTEREELVMGGRITFSINVHREVCAMQKIGGLALAPTSLARLAEIAMEKVGDWHSLLQTSLEAADSQAKAERLRCVRGTASMHVRRGAL 311
E +S N+REF+L+++ ++ R DGR D R +++++ ++ G E+QLG+TRV T VT E++ P P+RP EGF + E SPMA++ +D+ R+NP +E+ R+IER L++SRA+DTE+LC++AGSKVW++R +V +LDD GN++D A ++ + AL+HFR P+VTV+ G++ ++ + E EP L IHH PI +TF F + ++DP REE VM G+++F +NVH+E+C + K GG++ + + ++IA+ + + + Q EA +A R T+ H+RR +L
Sbjct: 3 EILSRNDREFVLSSI-EQRLRLDGRRLNDMRSIKISFGKSSGMV--EVQLGRTRVYTTVTCEVSEPKPERPNEGFFMFSTEISPMASVSVDSTRSNPAEIELGRLIERGLKESRAIDTESLCIVAGSKVWTIRTNVHVLDDCGNLLDCASISVITALLHFRKPDVTVV--GNE----ATIHPIEEREPVPLSIHHTPISITFGFFPKGAM--IVDPESREEQVMDGKLSFLVNVHKEICGVSKGGGMSTTIEQVIKCSKIAIIRTAE---VTQQIREALHQNVQA------RSTSGSHLRRKSL 286
BLAST of EWM21351.1 vs. NCBI_GenBank
Match: gi|1183367986|gb|ORX94083.1| (hypothetical protein K493DRAFT_221945 [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 237.654 bits (605), Expect = 1.841e-70 Identity = 123/279 (44.09%), Postives = 177/279 (63.44%), Query Frame = 0
Query: 11 SINEREFILTALKDENCRADGRTPADTRELRVTYARAEGQATAEIQLGKTRVLTVVTSELTPPYPDRPAEGFLNLNVEYSPMATLGIDNARTNPTLVEVDRVIERCLRQSRALDTEALCVIAGSKVWSLRCDVRILDDAGNVVDAACLATVAALMHFRLPEVTVLTGGSDERSNSSANDGESSEPSALPIHHVPICVTFVLFNTSPIVSVIDPTEREELVMGGRITFSINVHREVCAMQKIGGLALAPTSLARLAEIAMEKVGDWHSLLQTSLEAADSQ 289
SINER F+L AL+ E R DGR D R ++++ GQA EIQLG+TRVL V+ E+T PYPD+P EGFL N E SP+A+ + R + V + RVIE+ LR+SRA+DTE LC++AG KVWS+R D+ LD GN++D AC+A ++AL+HFR P+VTV+ + + E P L IHH+PIC+TF F+ ++ V+DP EE + G +T ++N HRE+C + K GG+ L + R ++IA KV + L+Q +L+++ Q
Sbjct: 8 SINERTFVLQALR-EGHRIDGRGLYDFRNIKISLGPELGQA--EIQLGRTRVLAKVSCEVTRPYPDKPTEGFLIFNTELSPLASPAFEIGRPSEEEVLISRVIEKALRRSRAIDTEGLCIVAGEKVWSIRVDIHFLDHEGNLIDCACIAAISALLHFRRPDVTVVG------EEVTIHPVEERNPVPLSIHHIPICITFSFFDNGELL-VVDPNLLEEQLRTGDMTIAMNAHREMCTLSKAGGIPLDLEQIFRCSKIATVKVQEITELIQNALKSSTVQ 276
BLAST of EWM21351.1 vs. NCBI_GenBank
Match: gi|1173940301|gb|OQR89760.1| (exosome complex exonuclease RRP45 [Thraustotheca clavata]) HSP 1 Score: 243.047 bits (619), Expect = 2.358e-70 Identity = 137/361 (37.95%), Postives = 204/361 (56.51%), Query Frame = 0
Query: 10 MSINEREFILTALK-----DENC--RADGRTPADTRELRVTYARA--EGQATAEIQLGKTRVLTVVTSELTPPYPDRPAEGFLNLNVEYSPMATLGIDNARTNPTLV-EVDRVIERCLRQSRALDTEALCVIAGSKVWSLRCDVRILDDAGNVVDAACLATVAALMHFRLPEVTVLTGGSDERSNSSANDGESSEPSALPIHHVPICVTFVLFNTSPI-----VSVIDPTEREELVMGGRITFSINVHREVCAMQKIGGLALAPTSLARLAEIAMEKVGDWHSLLQTSLEAADSQAKAERLRCVRGTASMHVRRGALGDAEGERGEKEVEGGADAPTSHIETAHLDFAELHAPIKVREGSE 355
+S NER+F+L +LK D+N RADGR + R + + R+ E Q+ E QLG+TRVL VV+ E+ PP+PDRP EGFL NVE SPM ++ + + E+ R++ER +R +ALDTEAL ++AG VW+++C + +LD GN+VDA +A+VAALMHFR PE + ND +S+ L +HH+P+ ++F P V ++DPT+REE ++ G IT++ N RE+CA+ KIGG++++ + R A IA K D +L+ + E AD +A +R +RG M A+ + ++ G D I +DF LHAPI +R E
Sbjct: 3 LSSNERDFLLASLKNHPSSDDNAVQRADGRGLVEFRRMNLALRRSVREAQSECEFQLGRTRVLAVVSGEVVPPFPDRPTEGFLQFNVELSPMGAAVFEHKQAHKAWAAELSRIVERSIRDCKALDTEALAIVAGESVWAIKCTIHVLDHGGNLVDAVSIASVAALMHFRRPE--------------TLNDPDSAM-IPLSLHHIPVSISFCFVQLDPNDQDDPVVMLDPTDREEKIVDGNITYTFNSFRELCAVHKIGGVSISTDVVLRCANIAAAKAEDLTDMLKKATEKADQEAIEQRRAMLRGKEFMDKSVAAM--STTQKAIPLDVSGLDKAMEDI----IDFDNLHAPIPLRNDDE 342
BLAST of EWM21351.1 vs. NCBI_GenBank
Match: gi|573919492|ref|XP_006647360.1| (PREDICTED: exosome complex component RRP45A-like isoform X2 [Oryza brachyantha]) HSP 1 Score: 240.35 bits (612), Expect = 7.796e-70 Identity = 130/288 (45.14%), Postives = 184/288 (63.89%), Query Frame = 0
Query: 11 SINEREFILTALKDENCRADGRTPADTRELRVTYARAEGQATAEIQLGKTRVLTVVTSELTPPYPDRPAEGFLNLNVEYSPMATLGIDNARTNPTLVEVDRVIERCLRQSRALDTEALCVIAGSKVWSLRCDVRILDDAGNVVDAACLATVAALMHFRLPEVTVLTGGSDERSNSSANDGESSEPSALPIHHVPICVTFVLFNTSPIVSVIDPTEREELVMGGRITFSINVHREVCAMQKIGGLALAPTSLARLAEIAMEKVGDWHSLLQ---TSLEAADSQAKAERL 295
++NER+FI AL+ + R DGR P D R L++ + R +G +AE+QLG+TRV+ VT++L PY DRP EG L + E+SPMA + R + +E+ RVI+R LR+SRA+D E+LCV+AG VWS+R D+ ILD+ GN++D A +A +AAL FR PE TV G D+ + +D E +P L IHH+PI VTF F I+ VIDPT +EE VMGGR+T +IN + +VCA+QK GG + + + + IA K D S ++ TS +A + K +RL
Sbjct: 9 TVNERDFIERALQ-SDLRVDGRRPFDFRRLKILFGREDG--SAEVQLGETRVMGYVTAQLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGESAIELGRVIDRGLRESRAVDMESLCVVAGRHVWSVRVDLHILDNGGNLIDTANIAALAALSTFRRPECTV---GGDDGQQVTVHDPEVRDPIPLTIHHLPIAVTFAYFGEGNIM-VIDPTYKEEAVMGGRMTATINSNGDVCAIQKAGGEGVMSSVIMQCLRIASVKAADITSKIKNEVTSYTSAKALQKVKRL 289
BLAST of EWM21351.1 vs. NCBI_GenBank
Match: gi|1002843846|ref|XP_015689297.1| (PREDICTED: exosome complex component RRP45A-like isoform X1 [Oryza brachyantha] >gi|1002843848|ref|XP_015689298.1| PREDICTED: exosome complex component RRP45A-like isoform X1 [Oryza brachyantha] >gi|1002843850|ref|XP_015689299.1| PREDICTED: exosome complex component RRP45A-like isoform X1 [Oryza brachyantha] >gi|1002843852|ref|XP_015689300.1| PREDICTED: exosome complex component RRP45A-like isoform X1 [Oryza brachyantha]) HSP 1 Score: 241.121 bits (614), Expect = 1.422e-69 Identity = 130/288 (45.14%), Postives = 184/288 (63.89%), Query Frame = 0
Query: 11 SINEREFILTALKDENCRADGRTPADTRELRVTYARAEGQATAEIQLGKTRVLTVVTSELTPPYPDRPAEGFLNLNVEYSPMATLGIDNARTNPTLVEVDRVIERCLRQSRALDTEALCVIAGSKVWSLRCDVRILDDAGNVVDAACLATVAALMHFRLPEVTVLTGGSDERSNSSANDGESSEPSALPIHHVPICVTFVLFNTSPIVSVIDPTEREELVMGGRITFSINVHREVCAMQKIGGLALAPTSLARLAEIAMEKVGDWHSLLQ---TSLEAADSQAKAERL 295
++NER+FI AL+ + R DGR P D R L++ + R +G +AE+QLG+TRV+ VT++L PY DRP EG L + E+SPMA + R + +E+ RVI+R LR+SRA+D E+LCV+AG VWS+R D+ ILD+ GN++D A +A +AAL FR PE TV G D+ + +D E +P L IHH+PI VTF F I+ VIDPT +EE VMGGR+T +IN + +VCA+QK GG + + + + IA K D S ++ TS +A + K +RL
Sbjct: 9 TVNERDFIERALQ-SDLRVDGRRPFDFRRLKILFGREDG--SAEVQLGETRVMGYVTAQLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGESAIELGRVIDRGLRESRAVDMESLCVVAGRHVWSVRVDLHILDNGGNLIDTANIAALAALSTFRRPECTV---GGDDGQQVTVHDPEVRDPIPLTIHHLPIAVTFAYFGEGNIM-VIDPTYKEEAVMGGRMTATINSNGDVCAIQKAGGEGVMSSVIMQCLRIASVKAADITSKIKNEVTSYTSAKALQKVKRL 289 The following BLAST results are available for this feature:
BLAST of EWM21351.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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