EWM29757.1, cds933 (CDS) Nannochloropsis gaditana

Overview
NameEWM29757.1
Unique Namecds933
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:761009..761905 -
Alignment locationCM002456.1:760849..760920 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29757.1
Productzinc finger protein
Orig transcript idgnl|cribi|Naga_100022g47.856.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:761009..761905 -
CM002456.1supercontigCM002456.1:760849..760920 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Homology
BLAST of EWM29757.1 vs. NCBI_GenBank
Match: gi|585112337|gb|EWM29757.1| (zinc finger protein [Nannochloropsis gaditana])

HSP 1 Score: 657.522 bits (1695), Expect = 0.000e+0
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0
Query:    1 MHQRGNKRQRGQGVPRLRAPNNSAGRSPGGATAILEANQSYASDESGNGEYIEESMVTASAPYTMSNEGRSTRDANYVDLTQERDEPEEEGREEEVEEEVQVLGVRPGPRRSGRASDSMLRGLFPPPPIRHRSAGMTMRGRGLGGLVAARDAAVAFPPELAPLFSHANNLIRLILSQRHGGPTIHRGATEAQISRLPVHFVPRQARSKKRKASDISTAREKCGATCAAGADVNGILCQTGPGGAAARVGLGSEAHARDRPAGRETEEEEEGGTCTICLEKYKGGEKLCTLPCAHVYHFKCCKKWLRTNSVCCICRASIDSTS 322
            MHQRGNKRQRGQGVPRLRAPNNSAGRSPGGATAILEANQSYASDESGNGEYIEESMVTASAPYTMSNEGRSTRDANYVDLTQERDEPEEEGREEEVEEEVQVLGVRPGPRRSGRASDSMLRGLFPPPPIRHRSAGMTMRGRGLGGLVAARDAAVAFPPELAPLFSHANNLIRLILSQRHGGPTIHRGATEAQISRLPVHFVPRQARSKKRKASDISTAREKCGATCAAGADVNGILCQTGPGGAAARVGLGSEAHARDRPAGRETEEEEEGGTCTICLEKYKGGEKLCTLPCAHVYHFKCCKKWLRTNSVCCICRASIDSTS
Sbjct:    1 MHQRGNKRQRGQGVPRLRAPNNSAGRSPGGATAILEANQSYASDESGNGEYIEESMVTASAPYTMSNEGRSTRDANYVDLTQERDEPEEEGREEEVEEEVQVLGVRPGPRRSGRASDSMLRGLFPPPPIRHRSAGMTMRGRGLGGLVAARDAAVAFPPELAPLFSHANNLIRLILSQRHGGPTIHRGATEAQISRLPVHFVPRQARSKKRKASDISTAREKCGATCAAGADVNGILCQTGPGGAAARVGLGSEAHARDRPAGRETEEEEEGGTCTICLEKYKGGEKLCTLPCAHVYHFKCCKKWLRTNSVCCICRASIDSTS 322          
BLAST of EWM29757.1 vs. NCBI_GenBank
Match: gi|762119857|ref|XP_011442845.1| (PREDICTED: uncharacterized RING finger protein ECU07_0330-like [Crassostrea gigas] >gi|762119859|ref|XP_011442846.1| PREDICTED: uncharacterized RING finger protein ECU07_0330-like [Crassostrea gigas])

HSP 1 Score: 73.1738 bits (178), Expect = 7.595e-11
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 0
Query:  267 EEEEGGTCTICLEKYKGGEKLCTLPCAHVYHFKCCKKWLRTNSVCCICRASI 318
            E+ EG  C +CL  +K G+KLCTLPC H YH  C K+WL+ N+ C ICR  +
Sbjct:  325 EDHEGPGCRVCLSSFKSGDKLCTLPCKHDYHAACVKEWLKRNASCPICRHDM 376          
BLAST of EWM29757.1 vs. NCBI_GenBank
Match: gi|19115091|ref|NP_594179.1| (ubiquitin-protein ligase E3 (predicted) [Schizosaccharomyces pombe 972h-] >gi|74638425|sp|Q9C1X4.1|YKW3_SCHPO RecName: Full=Uncharacterized RING finger protein P32A8.03c >gi|13093904|emb|CAC29482.1| ubiquitin-protein ligase E3 (predicted) [Schizosaccharomyces pombe])

HSP 1 Score: 72.4034 bits (176), Expect = 1.855e-10
Identity = 26/54 (48.15%), Postives = 33/54 (61.11%), Query Frame = 0
Query:  269 EEGGTCTICLEKYKGGEKLCTLPCAHVYHFKCCKKWLRTNSVCCICRASIDSTS 322
            +E G CTIC+E +K  + +  LPC H +H  C K WLR N  C ICRA +D  S
Sbjct:  391 DEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPVDPNS 444          
BLAST of EWM29757.1 vs. NCBI_GenBank
Match: gi|901815859|gb|KMZ70168.1| (putative Ring finger protein [Zostera marina])

HSP 1 Score: 71.633 bits (174), Expect = 2.161e-10
Identity = 41/135 (30.37%), Postives = 64/135 (47.41%), Query Frame = 0
Query:  185 HRGATEAQISRLPVHFVPRQARSKKRKASDISTAREKCGATCAAGADVNGILCQTGPGGAAARVGLGSEAHARDRPAGRETEEEEEGGTCTICLEKYKGGEKLCTLPCAHVYHFKCCKKWLRTNSVCCICRASID 319
            +RGAT   I+ LP +    +   +KR         +K   T + G D+ GIL             +G++         +E    +E   C ICL KY   ++L  LPC HV+H  C  KWL+ NS+C +C+A+++
Sbjct:  294 NRGATNESINALPTYKFKVKKHHRKRD--------DKSAETNSDGRDIVGIL------------AIGTD---------KERTISDEDAACCICLAKYVNNDELRELPCTHVFHVSCVDKWLKINSLCPLCKATVE 399          
BLAST of EWM29757.1 vs. NCBI_GenBank
Match: gi|145359146|ref|NP_200027.2| (RING/U-box superfamily protein [Arabidopsis thaliana] >gi|91807030|gb|ABE66242.1| zinc finger protein-like protein [Arabidopsis thaliana] >gi|332008793|gb|AED96176.1| RING/U-box superfamily protein [Arabidopsis thaliana])

HSP 1 Score: 70.8626 bits (172), Expect = 2.298e-10
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 0
Query:  270 EGGTCTICLEKYKGGEKLCTLPCAHVYHFKCCKKWLRTNSVCCICRASI 318
            +   C+ICL +Y  G+K+ TLPC H+YH  C  +WL+ N VCCIC+A +
Sbjct:  230 DDSQCSICLMEYAKGDKITTLPCKHIYHKDCISQWLKQNKVCCICKAEV 278          
BLAST of EWM29757.1 vs. NCBI_GenBank
Match: gi|727428593|ref|XP_010473696.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER-related-like [Camelina sativa])

HSP 1 Score: 70.0922 bits (170), Expect = 3.064e-10
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 0
Query:  270 EGGTCTICLEKYKGGEKLCTLPCAHVYHFKCCKKWLRTNSVCCICRASI 318
            +   C+ICL  Y+ G+K+ TLPC H+YH  C  +WL+ N VCC+C+A +
Sbjct:  208 DDSQCSICLVDYENGDKITTLPCNHIYHKDCISQWLKQNKVCCVCKAEV 256          
BLAST of EWM29757.1 vs. NCBI_GenBank
Match: gi|297327625|gb|EFH58045.1| (hypothetical protein ARALYDRAFT_483242 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 68.9366 bits (167), Expect = 6.625e-10
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 0
Query:  270 EGGTCTICLEKYKGGEKLCTLPCAHVYHFKCCKKWLRTNSVCCICRASI 318
            +   C+ICL +Y  G+K+ TLPC HVYH  C  +WL+ N VCC+C+A +
Sbjct:  198 DDSQCSICLVEYAKGDKITTLPCKHVYHKDCISRWLKQNKVCCVCKAVV 246          
BLAST of EWM29757.1 vs. NCBI_GenBank
Match: gi|297796023|ref|XP_002865896.1| (E3 ubiquitin ligase BIG BROTHER-related [Arabidopsis lyrata subsp. lyrata] >gi|297311731|gb|EFH42155.1| protein binding protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 69.3218 bits (168), Expect = 7.583e-10
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 0
Query:  270 EGGTCTICLEKYKGGEKLCTLPCAHVYHFKCCKKWLRTNSVCCICRASI 318
            +   C+ICL  Y  G+K+ TLPC H+YH  C  +WL+ N VCC+C+A +
Sbjct:  230 DDSQCSICLVDYAEGDKITTLPCKHIYHKDCISQWLKQNKVCCVCKAEV 278          
BLAST of EWM29757.1 vs. NCBI_GenBank
Match: gi|910755895|gb|KNH03656.1| (ring finger protein [Perkinsela sp. CCAP 1560/4])

HSP 1 Score: 70.0922 bits (170), Expect = 7.921e-10
Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 0
Query:  265 TEEEEEGGTCTICLEKYKGGEKLCTLPCAHVYHFKCCKKWLRTNSVCCICRASI 318
            ++ EE    C ICLE +K  E++ TLPC H+YH +C  +WL++NS C IC+ S+
Sbjct:  357 SQNEEARNVCPICLENFKEKERIRTLPCFHIYHVRCIDRWLKSNSKCPICKNSV 410          
BLAST of EWM29757.1 vs. NCBI_GenBank
Match: gi|674906017|emb|CDY27083.1| (BnaA02g11030D [Brassica napus])

HSP 1 Score: 68.1662 bits (165), Expect = 8.861e-10
Identity = 22/45 (48.89%), Postives = 33/45 (73.33%), Query Frame = 0
Query:  274 CTICLEKYKGGEKLCTLPCAHVYHFKCCKKWLRTNSVCCICRASI 318
            C+ICL ++K G+ + TLPCAH+YH +C   WL  N +CC+C+A +
Sbjct:  173 CSICLIEFKKGDTISTLPCAHIYHKECISHWLEENKICCVCKAEV 217          
The following BLAST results are available for this feature:
BLAST of EWM29757.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112337|gb|EWM29757.1|0.000e+0100.00zinc finger protein [Nannochloropsis gaditana][more]
gi|762119857|ref|XP_011442845.1|7.595e-1151.92PREDICTED: uncharacterized RING finger protein ECU... [more]
gi|19115091|ref|NP_594179.1|1.855e-1048.15ubiquitin-protein ligase E3 (predicted) [Schizosac... [more]
gi|901815859|gb|KMZ70168.1|2.161e-1030.37putative Ring finger protein [Zostera marina][more]
gi|145359146|ref|NP_200027.2|2.298e-1048.98RING/U-box superfamily protein [Arabidopsis thalia... [more]
gi|727428593|ref|XP_010473696.1|3.064e-1046.94PREDICTED: E3 ubiquitin ligase BIG BROTHER-related... [more]
gi|297327625|gb|EFH58045.1|6.625e-1048.98hypothetical protein ARALYDRAFT_483242 [Arabidopsi... [more]
gi|297796023|ref|XP_002865896.1|7.583e-1046.94E3 ubiquitin ligase BIG BROTHER-related [Arabidops... [more]
gi|910755895|gb|KNH03656.1|7.921e-1046.30ring finger protein [Perkinsela sp. CCAP 1560/4][more]
gi|674906017|emb|CDY27083.1|8.861e-1048.89BnaA02g11030D [Brassica napus][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna933rna933Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications