EWM29757.1, cds933 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29757.1 vs. NCBI_GenBank
Match: gi|585112337|gb|EWM29757.1| (zinc finger protein [Nannochloropsis gaditana]) HSP 1 Score: 657.522 bits (1695), Expect = 0.000e+0 Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0
Query: 1 MHQRGNKRQRGQGVPRLRAPNNSAGRSPGGATAILEANQSYASDESGNGEYIEESMVTASAPYTMSNEGRSTRDANYVDLTQERDEPEEEGREEEVEEEVQVLGVRPGPRRSGRASDSMLRGLFPPPPIRHRSAGMTMRGRGLGGLVAARDAAVAFPPELAPLFSHANNLIRLILSQRHGGPTIHRGATEAQISRLPVHFVPRQARSKKRKASDISTAREKCGATCAAGADVNGILCQTGPGGAAARVGLGSEAHARDRPAGRETEEEEEGGTCTICLEKYKGGEKLCTLPCAHVYHFKCCKKWLRTNSVCCICRASIDSTS 322
MHQRGNKRQRGQGVPRLRAPNNSAGRSPGGATAILEANQSYASDESGNGEYIEESMVTASAPYTMSNEGRSTRDANYVDLTQERDEPEEEGREEEVEEEVQVLGVRPGPRRSGRASDSMLRGLFPPPPIRHRSAGMTMRGRGLGGLVAARDAAVAFPPELAPLFSHANNLIRLILSQRHGGPTIHRGATEAQISRLPVHFVPRQARSKKRKASDISTAREKCGATCAAGADVNGILCQTGPGGAAARVGLGSEAHARDRPAGRETEEEEEGGTCTICLEKYKGGEKLCTLPCAHVYHFKCCKKWLRTNSVCCICRASIDSTS
Sbjct: 1 MHQRGNKRQRGQGVPRLRAPNNSAGRSPGGATAILEANQSYASDESGNGEYIEESMVTASAPYTMSNEGRSTRDANYVDLTQERDEPEEEGREEEVEEEVQVLGVRPGPRRSGRASDSMLRGLFPPPPIRHRSAGMTMRGRGLGGLVAARDAAVAFPPELAPLFSHANNLIRLILSQRHGGPTIHRGATEAQISRLPVHFVPRQARSKKRKASDISTAREKCGATCAAGADVNGILCQTGPGGAAARVGLGSEAHARDRPAGRETEEEEEGGTCTICLEKYKGGEKLCTLPCAHVYHFKCCKKWLRTNSVCCICRASIDSTS 322
BLAST of EWM29757.1 vs. NCBI_GenBank
Match: gi|762119857|ref|XP_011442845.1| (PREDICTED: uncharacterized RING finger protein ECU07_0330-like [Crassostrea gigas] >gi|762119859|ref|XP_011442846.1| PREDICTED: uncharacterized RING finger protein ECU07_0330-like [Crassostrea gigas]) HSP 1 Score: 73.1738 bits (178), Expect = 7.595e-11 Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 0
Query: 267 EEEEGGTCTICLEKYKGGEKLCTLPCAHVYHFKCCKKWLRTNSVCCICRASI 318
E+ EG C +CL +K G+KLCTLPC H YH C K+WL+ N+ C ICR +
Sbjct: 325 EDHEGPGCRVCLSSFKSGDKLCTLPCKHDYHAACVKEWLKRNASCPICRHDM 376
BLAST of EWM29757.1 vs. NCBI_GenBank
Match: gi|19115091|ref|NP_594179.1| (ubiquitin-protein ligase E3 (predicted) [Schizosaccharomyces pombe 972h-] >gi|74638425|sp|Q9C1X4.1|YKW3_SCHPO RecName: Full=Uncharacterized RING finger protein P32A8.03c >gi|13093904|emb|CAC29482.1| ubiquitin-protein ligase E3 (predicted) [Schizosaccharomyces pombe]) HSP 1 Score: 72.4034 bits (176), Expect = 1.855e-10 Identity = 26/54 (48.15%), Postives = 33/54 (61.11%), Query Frame = 0
Query: 269 EEGGTCTICLEKYKGGEKLCTLPCAHVYHFKCCKKWLRTNSVCCICRASIDSTS 322
+E G CTIC+E +K + + LPC H +H C K WLR N C ICRA +D S
Sbjct: 391 DEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPVDPNS 444
BLAST of EWM29757.1 vs. NCBI_GenBank
Match: gi|901815859|gb|KMZ70168.1| (putative Ring finger protein [Zostera marina]) HSP 1 Score: 71.633 bits (174), Expect = 2.161e-10 Identity = 41/135 (30.37%), Postives = 64/135 (47.41%), Query Frame = 0
Query: 185 HRGATEAQISRLPVHFVPRQARSKKRKASDISTAREKCGATCAAGADVNGILCQTGPGGAAARVGLGSEAHARDRPAGRETEEEEEGGTCTICLEKYKGGEKLCTLPCAHVYHFKCCKKWLRTNSVCCICRASID 319
+RGAT I+ LP + + +KR +K T + G D+ GIL +G++ +E +E C ICL KY ++L LPC HV+H C KWL+ NS+C +C+A+++
Sbjct: 294 NRGATNESINALPTYKFKVKKHHRKRD--------DKSAETNSDGRDIVGIL------------AIGTD---------KERTISDEDAACCICLAKYVNNDELRELPCTHVFHVSCVDKWLKINSLCPLCKATVE 399
BLAST of EWM29757.1 vs. NCBI_GenBank
Match: gi|145359146|ref|NP_200027.2| (RING/U-box superfamily protein [Arabidopsis thaliana] >gi|91807030|gb|ABE66242.1| zinc finger protein-like protein [Arabidopsis thaliana] >gi|332008793|gb|AED96176.1| RING/U-box superfamily protein [Arabidopsis thaliana]) HSP 1 Score: 70.8626 bits (172), Expect = 2.298e-10 Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 0
Query: 270 EGGTCTICLEKYKGGEKLCTLPCAHVYHFKCCKKWLRTNSVCCICRASI 318
+ C+ICL +Y G+K+ TLPC H+YH C +WL+ N VCCIC+A +
Sbjct: 230 DDSQCSICLMEYAKGDKITTLPCKHIYHKDCISQWLKQNKVCCICKAEV 278
BLAST of EWM29757.1 vs. NCBI_GenBank
Match: gi|727428593|ref|XP_010473696.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER-related-like [Camelina sativa]) HSP 1 Score: 70.0922 bits (170), Expect = 3.064e-10 Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 0
Query: 270 EGGTCTICLEKYKGGEKLCTLPCAHVYHFKCCKKWLRTNSVCCICRASI 318
+ C+ICL Y+ G+K+ TLPC H+YH C +WL+ N VCC+C+A +
Sbjct: 208 DDSQCSICLVDYENGDKITTLPCNHIYHKDCISQWLKQNKVCCVCKAEV 256
BLAST of EWM29757.1 vs. NCBI_GenBank
Match: gi|297327625|gb|EFH58045.1| (hypothetical protein ARALYDRAFT_483242 [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 68.9366 bits (167), Expect = 6.625e-10 Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 0
Query: 270 EGGTCTICLEKYKGGEKLCTLPCAHVYHFKCCKKWLRTNSVCCICRASI 318
+ C+ICL +Y G+K+ TLPC HVYH C +WL+ N VCC+C+A +
Sbjct: 198 DDSQCSICLVEYAKGDKITTLPCKHVYHKDCISRWLKQNKVCCVCKAVV 246
BLAST of EWM29757.1 vs. NCBI_GenBank
Match: gi|297796023|ref|XP_002865896.1| (E3 ubiquitin ligase BIG BROTHER-related [Arabidopsis lyrata subsp. lyrata] >gi|297311731|gb|EFH42155.1| protein binding protein [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 69.3218 bits (168), Expect = 7.583e-10 Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 0
Query: 270 EGGTCTICLEKYKGGEKLCTLPCAHVYHFKCCKKWLRTNSVCCICRASI 318
+ C+ICL Y G+K+ TLPC H+YH C +WL+ N VCC+C+A +
Sbjct: 230 DDSQCSICLVDYAEGDKITTLPCKHIYHKDCISQWLKQNKVCCVCKAEV 278
BLAST of EWM29757.1 vs. NCBI_GenBank
Match: gi|910755895|gb|KNH03656.1| (ring finger protein [Perkinsela sp. CCAP 1560/4]) HSP 1 Score: 70.0922 bits (170), Expect = 7.921e-10 Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 0
Query: 265 TEEEEEGGTCTICLEKYKGGEKLCTLPCAHVYHFKCCKKWLRTNSVCCICRASI 318
++ EE C ICLE +K E++ TLPC H+YH +C +WL++NS C IC+ S+
Sbjct: 357 SQNEEARNVCPICLENFKEKERIRTLPCFHIYHVRCIDRWLKSNSKCPICKNSV 410
BLAST of EWM29757.1 vs. NCBI_GenBank
Match: gi|674906017|emb|CDY27083.1| (BnaA02g11030D [Brassica napus]) HSP 1 Score: 68.1662 bits (165), Expect = 8.861e-10 Identity = 22/45 (48.89%), Postives = 33/45 (73.33%), Query Frame = 0
Query: 274 CTICLEKYKGGEKLCTLPCAHVYHFKCCKKWLRTNSVCCICRASI 318
C+ICL ++K G+ + TLPCAH+YH +C WL N +CC+C+A +
Sbjct: 173 CSICLIEFKKGDTISTLPCAHIYHKECISHWLEENKICCVCKAEV 217 The following BLAST results are available for this feature:
BLAST of EWM29757.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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