EWM21333.1, cds9324 (CDS) Nannochloropsis gaditana

Overview
NameEWM21333.1
Unique Namecds9324
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:46846..47595 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21333.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100075g22.2867.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:46846..47595 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM21333.1 vs. NCBI_GenBank
Match: gi|585101518|gb|EWM21333.1| (hypothetical protein Naga_100075g22 [Nannochloropsis gaditana])

HSP 1 Score: 506.138 bits (1302), Expect = 0.000e+0
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0
Query:    1 MNLCFSVHVLLALFQALTFAHAFVVRLSKSSVLAPLASTSSPPPPTTTSPSSTGASKKASLSSNVPWDLSVVIKKEGYSDIQADFRIRFVTEPGYEPPQGRIFVERDPLALIDTDEKGFALGPAPAWTLSEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCLTEVDEEGERRKELRPVFGGTGIPGNRLNFRFNHVRQDGAVSLSEGQLTFKEVEMRKVDPLGIGGVVNVGDVKDAGEAQLRPVLI 249
            MNLCFSVHVLLALFQALTFAHAFVVRLSKSSVLAPLASTSSPPPPTTTSPSSTGASKKASLSSNVPWDLSVVIKKEGYSDIQADFRIRFVTEPGYEPPQGRIFVERDPLALIDTDEKGFALGPAPAWTLSEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCLTEVDEEGERRKELRPVFGGTGIPGNRLNFRFNHVRQDGAVSLSEGQLTFKEVEMRKVDPLGIGGVVNVGDVKDAGEAQLRPVLI
Sbjct:    1 MNLCFSVHVLLALFQALTFAHAFVVRLSKSSVLAPLASTSSPPPPTTTSPSSTGASKKASLSSNVPWDLSVVIKKEGYSDIQADFRIRFVTEPGYEPPQGRIFVERDPLALIDTDEKGFALGPAPAWTLSEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCLTEVDEEGERRKELRPVFGGTGIPGNRLNFRFNHVRQDGAVSLSEGQLTFKEVEMRKVDPLGIGGVVNVGDVKDAGEAQLRPVLI 249          
BLAST of EWM21333.1 vs. NCBI_GenBank
Match: gi|255088303|ref|XP_002506074.1| (predicted protein [Micromonas commoda] >gi|226521345|gb|ACO67332.1| predicted protein [Micromonas commoda])

HSP 1 Score: 93.9745 bits (232), Expect = 1.205e-19
Identity = 57/144 (39.58%), Postives = 74/144 (51.39%), Query Frame = 0
Query:   86 RIRFVTEPGYEPPQGRIFVERDPLALIDTDEKGFALGPAPAWTLSEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCLTEVDEEGERRKELRPVFGGTGIPGNRLNFRFNHVR--QDGAVSLSEGQLTFKEVEMRKVDPLGI 227
            R RFV + GYEPPQG I +E       D  E  F       WTL+ED N+R+ GLWIWGLF+EPL+PY+  S     DC             +    GG  IP  +L     H R  + G V LS+G+L+FK  +  K D +G+
Sbjct:   83 RARFVVDEGYEPPQGSIEIE-------DDQELAFVQAGFHRWTLAEDPNERKAGLWIWGLFEEPLYPYMLLSF----DC-----------NRIEVAEGGYHIPKGKLFAEVKHARGSKSGHV-LSDGKLSFKVTKTYKADLVGL 203          
BLAST of EWM21333.1 vs. NCBI_GenBank
Match: gi|551563550|ref|XP_005768446.1| (hypothetical protein EMIHUDRAFT_211059 [Emiliania huxleyi CCMP1516] >gi|485619139|gb|EOD16017.1| hypothetical protein EMIHUDRAFT_211059 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 88.5817 bits (218), Expect = 1.174e-17
Identity = 53/137 (38.69%), Postives = 68/137 (49.64%), Query Frame = 0
Query:   87 IRFVTEPGYEPPQGRIFVERDPLALIDTDEKGFALGPAPA-WTLSEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCLTEVDEEGERRKELRPVFGGTGIPGNRLNFRFNHVRQDGAVSLSEGQLTFKEVEMRKV 222
            +RF  E GYEPPQG++ V+          E    LG  PA W+LSED  DR+  LWIWGLF +PL+P+L F L +                       G  IP   L F+ +H R+DGAV L EG +T+K      V
Sbjct:   74 VRFAEEEGYEPPQGKLSVDSC------LPEGSLRLGEQPAQWSLSEDPEDRKDSLWIWGLFSDPLYPFLLFQLDL--------------------AAPGVCIPAGPLYFQVDHRRKDGAVQLGEGDVTYKARRTHAV 184          
BLAST of EWM21333.1 vs. NCBI_GenBank
Match: gi|1210511350|dbj|GAX29581.1| (hypothetical protein FisN_24Lh038 [Fistulifera solaris])

HSP 1 Score: 88.1965 bits (217), Expect = 1.694e-17
Identity = 70/240 (29.17%), Postives = 107/240 (44.58%), Query Frame = 0
Query:   23 FVVRLSKSSVLAPLASTSSP---PPPTTTSPSSTGASKKASLSSNVPWDLSVVIKKEGYSDIQAD--------FRIRFVTEPGYEPPQGRIFVERDPLALIDTDEKGFALGPAPA----WTLSEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCLTEVDEEGERRKELRPVFGGTG-IPGNRLNFRFNHVRQDGAVSLSEGQLTFKEVEMRKVDPLGIGGVVNVGDVKDAGEAQLRP 246
            F + +  S +L  L++T S     PP +   +   A+   +L+    W++ +V++  G    Q             +FV + GYEPPQG        L ++   +        P     W LSED NDR+ GLW+WGLF EPL+P+L  +L   D  L              P   GT  +P  +L  + NH R++G V L    L ++ +E  + DPLG    V++ D    G   L+P
Sbjct:   11 FSILICSSLLLVTLSTTISAFVVAPPRSAHTTRWLAATAPTLTEATTWNVRLVMR--GLISAQGSKLDPLLYTIETQFVEDQGYEPPQGT-------LKMLSNTKNSTTTTTIPIVKSRWILSEDPNDRKDGLWVWGLFKEPLYPFLLLTLQTDDIPL--------------PNNNGTDFVPAMQLYAQINHRREEGKVILEGKDLCWRRMETVRADPLG-AATVDLYDNVVVGTIALQP 226          
BLAST of EWM21333.1 vs. NCBI_GenBank
Match: gi|299469861|emb|CBN76715.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 83.9593 bits (206), Expect = 1.255e-15
Identity = 62/195 (31.79%), Postives = 92/195 (47.18%), Query Frame = 0
Query:   60 SLSSNVPWDLSVVIKK-----EGYSDIQADFRIRFVTEPGYEPPQGRI-FVERDPLALIDTDEKGFALGPAPAWTLSEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCLTEVDEEGERRKELRPVFGGTGIPGNRLNFRFNHVRQDG-AVSLSEGQLTFKEVEMRKVDPLGIGGVVNVGDVKDAGEAQLRPV 247
            +LS +  W + + +K      E     +   R+RF  E  +EPPQG +  +E +P     T + G A      WTLSE ++ R  GLW+WGLF +PL+P+L   +  L+                 P+ GG  I   RL  + +H R D    +L  G +  K VE  +VDPLG+    ++ +V   G  Q RPV
Sbjct:   91 TLSGSTQWRMFLSLKDPTLGGEAGDTTEVAVRVRFDEERDFEPPQGSLEVIEDNPYF---TQQAGKA-----RWTLSEAEDTRGAGLWVWGLFKDPLYPFLLLQVNNLEI----------------PLKGGAKIAPGRLYVKVDHRRDDELGPTLKSGTVGVKIVERVRVDPLGM-AEADITNVVPCGSVQFRPV 260          
BLAST of EWM21333.1 vs. NCBI_GenBank
Match: gi|303287172|ref|XP_003062875.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226455511|gb|EEH52814.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 79.337 bits (194), Expect = 5.113e-14
Identity = 61/197 (30.96%), Postives = 88/197 (44.67%), Query Frame = 0
Query:   80 DIQADFRIRFVTEPGYEPPQGRIFVERDPLALIDTDEKGFALGPAPAWTL------------------------------SEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCLTEVDEEGERRKELRPVFGGTGIPGNRLNFRFNHVR--QDGAVSLSEGQLTFKEVEMRKVDPLGIGGVVNVGDVKDAGEAQL 244
            D   D R  FV + GYEPPQG +        +++ D+  F  G    WTL                              S+D N+R+ GLWIWGLF+EPL+PY+  S  V              R E+R   GG  +P  +L     H R  + G V LS+G+L+FK  +  + D +G+   V+VG+  + G  +L
Sbjct:   76 DRVVDARCVFVVDEGYEPPQGVV-------QIVEDDDGVFVDGGLHRWTLEELVCDIVSSESPSSRVVAFVPPTPHSPLPSQDPNERKAGLWIWGLFEEPLYPYMLLSFDV-------------NRVEVRE--GGYHVPAGKLFGEMRHARGSKSGHV-LSDGRLSFKVTKTYQADLVGLSK-VSVGEPTECGRVRL 248          
BLAST of EWM21333.1 vs. NCBI_GenBank
Match: gi|1210528821|dbj|GAX12464.1| (hypothetical protein FisN_24Hh038 [Fistulifera solaris])

HSP 1 Score: 75.485 bits (184), Expect = 4.756e-13
Identity = 48/147 (32.65%), Postives = 72/147 (48.98%), Query Frame = 0
Query:  101 RIFVERDPLALIDTDEKGFALGPAPAWTLSEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCLTEVDEEGERRKELRPVFGGTG-IPGNRLNFRFNHVRQDGAVSLSEGQLTFKEVEMRKVDPLGIGGVVNVGDVKDAGEAQLRP 246
            R+ +  D    I  +++   +  +  W LSED NDR+ GLW+WGLF EPL+P+L  +L   D  L              P   GT  +P  +L  + NH R +G V L    L ++++E  + DPLG    V++ D    G   L+P
Sbjct:   62 RLVMRGDIENAIKHEKQHDKINNSSRWILSEDPNDRKDGLWVWGLFKEPLYPFLLLTLQTDDIPL--------------PNNNGTDFVPAMQLYAQVNHRRDEGKVILEGKDLCWRQMETVRADPLG-AATVDLYDNVVVGTIALQP 193          
BLAST of EWM21333.1 vs. NCBI_GenBank
Match: gi|397585841|gb|EJK53411.1| (hypothetical protein THAOC_27162 [Thalassiosira oceanica])

HSP 1 Score: 72.4034 bits (176), Expect = 1.271e-11
Identity = 66/239 (27.62%), Postives = 105/239 (43.93%), Query Frame = 0
Query:   21 HAFVVRLSKSSVLAPLASTSSPPPPTTTSPSSTGASKKASLSSNVPWDLSVVIKKEGYSD-IQADFRI-----RFVTEPGYEPPQGRIFV-ERDPLALIDTDEKGFALGPAPA--WTLSEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCL-TEVDEEGERRKELRPVFGGTGIPGNRLNFRFNHVR-QDGAVSLSEGQLTFKEVEMRKVDPLGIGGVVNVGDVKDAGEAQLRPVL 248
            HAF          AP  +  S    TT+   S  A+ + +L+    W L +++     S   + D ++      F+ E GYEPPQG     ER   +  D  E    +    +  W LSED +D + GLWIWGLF EPL+P++   +      L + +DEE +             IP  +L  + NH R +D  V L    L  + +E  ++     G  V++ + +  G+   +P+L
Sbjct:   19 HAFT---------APNTAKRSKNAATTSLFMSETATARTTLTDETTWRLRLLLNDVTSSKGAKLDGKLFVIEGSFIEEEGYEPPQGTFVANERRSSSGEDLSESDTTILKVKSSRWKLSEDPDDPKDGLWIWGLFKEPLYPFMLLQIETEKLTLPSGIDEEAD------------SIPPLKLFAQINHARKEDVGVELQAANLNVRILEQIQLP----GASVDLYEEEPVGQISFQPLL 232          
BLAST of EWM21333.1 vs. NCBI_GenBank
Match: gi|1072223135|gb|OEU07892.1| (hypothetical protein FRACYDRAFT_271884 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 70.8626 bits (172), Expect = 3.014e-11
Identity = 65/221 (29.41%), Postives = 94/221 (42.53%), Query Frame = 0
Query:   59 ASLSSNVPWDLSVVI--------KKEGYSDIQADFRIRFVTEPGYEPPQG---RIFVER-------------------DPLALIDTDEKGFALGPAPAWTLSEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCLTEVDEEGERRKELRPVFGGTGIPGNRLNFRFNHVR-QDGAVSLS-EGQLTFKEVEMRKVDPLGIGGVVNVGDVKDAGEAQLRPV 247
            A+L+    W+  + +        KK G   I A  + +F+ EPGYEPPQG   +IF                      D  +L  T +     G    WTLSED NDR+  LWIWGLF EPL+P+L  +  +       +   G     ++P          +L  + NH R ++G V L     +  +E E  K DP G   V+   D    G+ QL+ +
Sbjct:    2 ATLTEETTWNFRMALSNLPTEKGKKAGVDGIFA-IQAKFIEEPGYEPPQGIIQQIFEVASSSEEVVEVETTPEEDGVVDTSSLPTTTQMTIKSG---RWTLSEDPNDRKDSLWIWGLFKEPLYPFLLLNFEI-----DRISLPGGEDDSIKPF---------QLYAQVNHKRGENGEVMLDLVSDINIREKESFKADPFGAANVLIDIDTS-IGQLQLQAM 203          
BLAST of EWM21333.1 vs. NCBI_GenBank
Match: gi|224004854|ref|XP_002296078.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|209586110|gb|ACI64795.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 67.0106 bits (162), Expect = 7.547e-10
Identity = 47/163 (28.83%), Postives = 77/163 (47.24%), Query Frame = 0
Query:   88 RFVTEPGYEPPQG--RIFVERDPLALIDTDEKGFALGPAPAWTLSEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCLTEVDEEGERRKELRPVFGGTGIPGNRLNFRFNHVR-QDGAVSLSEGQLTFKEVEMRKVDPLGIGGVVNVGDVKDAGEAQLRPV 247
             F+ E GYEPPQG  R F +         D           WTLSED ND++ GLWIWGLF EPL+P++   +   +    E+    ++ ++ R       IP  +L  +  H+R ++  V L    L  + +E  ++     G  V++ + +  G+   +P+
Sbjct:   61 HFIEEEGYEPPQGLFRPFAKERVEGGTGKDNAMVLEVIRSRWTLSEDPNDKKDGLWIWGLFKEPLYPFMLLQIETKE---LELPSGTQQAQDGREDIKSDTIPPLKLYAQVTHIRNEEVGVELKTANLNVRVLEKIQLP----GASVDLYEEERVGQVSFQPL 216          
The following BLAST results are available for this feature:
BLAST of EWM21333.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101518|gb|EWM21333.1|0.000e+0100.00hypothetical protein Naga_100075g22 [Nannochlorops... [more]
gi|255088303|ref|XP_002506074.1|1.205e-1939.58predicted protein [Micromonas commoda] >gi|2265213... [more]
gi|551563550|ref|XP_005768446.1|1.174e-1738.69hypothetical protein EMIHUDRAFT_211059 [Emiliania ... [more]
gi|1210511350|dbj|GAX29581.1|1.694e-1729.17hypothetical protein FisN_24Lh038 [Fistulifera sol... [more]
gi|299469861|emb|CBN76715.1|1.255e-1531.79conserved unknown protein [Ectocarpus siliculosus][more]
gi|303287172|ref|XP_003062875.1|5.113e-1430.96predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|1210528821|dbj|GAX12464.1|4.756e-1332.65hypothetical protein FisN_24Hh038 [Fistulifera sol... [more]
gi|397585841|gb|EJK53411.1|1.271e-1127.62hypothetical protein THAOC_27162 [Thalassiosira oc... [more]
gi|1072223135|gb|OEU07892.1|3.014e-1129.41hypothetical protein FRACYDRAFT_271884 [Fragilario... [more]
gi|224004854|ref|XP_002296078.1|7.547e-1028.83predicted protein [Thalassiosira pseudonana CCMP13... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9354rna9354Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications