EWM21333.1, cds9324 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM21333.1 vs. NCBI_GenBank
Match: gi|585101518|gb|EWM21333.1| (hypothetical protein Naga_100075g22 [Nannochloropsis gaditana]) HSP 1 Score: 506.138 bits (1302), Expect = 0.000e+0 Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0
Query: 1 MNLCFSVHVLLALFQALTFAHAFVVRLSKSSVLAPLASTSSPPPPTTTSPSSTGASKKASLSSNVPWDLSVVIKKEGYSDIQADFRIRFVTEPGYEPPQGRIFVERDPLALIDTDEKGFALGPAPAWTLSEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCLTEVDEEGERRKELRPVFGGTGIPGNRLNFRFNHVRQDGAVSLSEGQLTFKEVEMRKVDPLGIGGVVNVGDVKDAGEAQLRPVLI 249
MNLCFSVHVLLALFQALTFAHAFVVRLSKSSVLAPLASTSSPPPPTTTSPSSTGASKKASLSSNVPWDLSVVIKKEGYSDIQADFRIRFVTEPGYEPPQGRIFVERDPLALIDTDEKGFALGPAPAWTLSEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCLTEVDEEGERRKELRPVFGGTGIPGNRLNFRFNHVRQDGAVSLSEGQLTFKEVEMRKVDPLGIGGVVNVGDVKDAGEAQLRPVLI
Sbjct: 1 MNLCFSVHVLLALFQALTFAHAFVVRLSKSSVLAPLASTSSPPPPTTTSPSSTGASKKASLSSNVPWDLSVVIKKEGYSDIQADFRIRFVTEPGYEPPQGRIFVERDPLALIDTDEKGFALGPAPAWTLSEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCLTEVDEEGERRKELRPVFGGTGIPGNRLNFRFNHVRQDGAVSLSEGQLTFKEVEMRKVDPLGIGGVVNVGDVKDAGEAQLRPVLI 249
BLAST of EWM21333.1 vs. NCBI_GenBank
Match: gi|255088303|ref|XP_002506074.1| (predicted protein [Micromonas commoda] >gi|226521345|gb|ACO67332.1| predicted protein [Micromonas commoda]) HSP 1 Score: 93.9745 bits (232), Expect = 1.205e-19 Identity = 57/144 (39.58%), Postives = 74/144 (51.39%), Query Frame = 0
Query: 86 RIRFVTEPGYEPPQGRIFVERDPLALIDTDEKGFALGPAPAWTLSEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCLTEVDEEGERRKELRPVFGGTGIPGNRLNFRFNHVR--QDGAVSLSEGQLTFKEVEMRKVDPLGI 227
R RFV + GYEPPQG I +E D E F WTL+ED N+R+ GLWIWGLF+EPL+PY+ S DC + GG IP +L H R + G V LS+G+L+FK + K D +G+
Sbjct: 83 RARFVVDEGYEPPQGSIEIE-------DDQELAFVQAGFHRWTLAEDPNERKAGLWIWGLFEEPLYPYMLLSF----DC-----------NRIEVAEGGYHIPKGKLFAEVKHARGSKSGHV-LSDGKLSFKVTKTYKADLVGL 203
BLAST of EWM21333.1 vs. NCBI_GenBank
Match: gi|551563550|ref|XP_005768446.1| (hypothetical protein EMIHUDRAFT_211059 [Emiliania huxleyi CCMP1516] >gi|485619139|gb|EOD16017.1| hypothetical protein EMIHUDRAFT_211059 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 88.5817 bits (218), Expect = 1.174e-17 Identity = 53/137 (38.69%), Postives = 68/137 (49.64%), Query Frame = 0
Query: 87 IRFVTEPGYEPPQGRIFVERDPLALIDTDEKGFALGPAPA-WTLSEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCLTEVDEEGERRKELRPVFGGTGIPGNRLNFRFNHVRQDGAVSLSEGQLTFKEVEMRKV 222
+RF E GYEPPQG++ V+ E LG PA W+LSED DR+ LWIWGLF +PL+P+L F L + G IP L F+ +H R+DGAV L EG +T+K V
Sbjct: 74 VRFAEEEGYEPPQGKLSVDSC------LPEGSLRLGEQPAQWSLSEDPEDRKDSLWIWGLFSDPLYPFLLFQLDL--------------------AAPGVCIPAGPLYFQVDHRRKDGAVQLGEGDVTYKARRTHAV 184
BLAST of EWM21333.1 vs. NCBI_GenBank
Match: gi|1210511350|dbj|GAX29581.1| (hypothetical protein FisN_24Lh038 [Fistulifera solaris]) HSP 1 Score: 88.1965 bits (217), Expect = 1.694e-17 Identity = 70/240 (29.17%), Postives = 107/240 (44.58%), Query Frame = 0
Query: 23 FVVRLSKSSVLAPLASTSSP---PPPTTTSPSSTGASKKASLSSNVPWDLSVVIKKEGYSDIQAD--------FRIRFVTEPGYEPPQGRIFVERDPLALIDTDEKGFALGPAPA----WTLSEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCLTEVDEEGERRKELRPVFGGTG-IPGNRLNFRFNHVRQDGAVSLSEGQLTFKEVEMRKVDPLGIGGVVNVGDVKDAGEAQLRP 246
F + + S +L L++T S PP + + A+ +L+ W++ +V++ G Q +FV + GYEPPQG L ++ + P W LSED NDR+ GLW+WGLF EPL+P+L +L D L P GT +P +L + NH R++G V L L ++ +E + DPLG V++ D G L+P
Sbjct: 11 FSILICSSLLLVTLSTTISAFVVAPPRSAHTTRWLAATAPTLTEATTWNVRLVMR--GLISAQGSKLDPLLYTIETQFVEDQGYEPPQGT-------LKMLSNTKNSTTTTTIPIVKSRWILSEDPNDRKDGLWVWGLFKEPLYPFLLLTLQTDDIPL--------------PNNNGTDFVPAMQLYAQINHRREEGKVILEGKDLCWRRMETVRADPLG-AATVDLYDNVVVGTIALQP 226
BLAST of EWM21333.1 vs. NCBI_GenBank
Match: gi|299469861|emb|CBN76715.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 83.9593 bits (206), Expect = 1.255e-15 Identity = 62/195 (31.79%), Postives = 92/195 (47.18%), Query Frame = 0
Query: 60 SLSSNVPWDLSVVIKK-----EGYSDIQADFRIRFVTEPGYEPPQGRI-FVERDPLALIDTDEKGFALGPAPAWTLSEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCLTEVDEEGERRKELRPVFGGTGIPGNRLNFRFNHVRQDG-AVSLSEGQLTFKEVEMRKVDPLGIGGVVNVGDVKDAGEAQLRPV 247
+LS + W + + +K E + R+RF E +EPPQG + +E +P T + G A WTLSE ++ R GLW+WGLF +PL+P+L + L+ P+ GG I RL + +H R D +L G + K VE +VDPLG+ ++ +V G Q RPV
Sbjct: 91 TLSGSTQWRMFLSLKDPTLGGEAGDTTEVAVRVRFDEERDFEPPQGSLEVIEDNPYF---TQQAGKA-----RWTLSEAEDTRGAGLWVWGLFKDPLYPFLLLQVNNLEI----------------PLKGGAKIAPGRLYVKVDHRRDDELGPTLKSGTVGVKIVERVRVDPLGM-AEADITNVVPCGSVQFRPV 260
BLAST of EWM21333.1 vs. NCBI_GenBank
Match: gi|303287172|ref|XP_003062875.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226455511|gb|EEH52814.1| predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 79.337 bits (194), Expect = 5.113e-14 Identity = 61/197 (30.96%), Postives = 88/197 (44.67%), Query Frame = 0
Query: 80 DIQADFRIRFVTEPGYEPPQGRIFVERDPLALIDTDEKGFALGPAPAWTL------------------------------SEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCLTEVDEEGERRKELRPVFGGTGIPGNRLNFRFNHVR--QDGAVSLSEGQLTFKEVEMRKVDPLGIGGVVNVGDVKDAGEAQL 244
D D R FV + GYEPPQG + +++ D+ F G WTL S+D N+R+ GLWIWGLF+EPL+PY+ S V R E+R GG +P +L H R + G V LS+G+L+FK + + D +G+ V+VG+ + G +L
Sbjct: 76 DRVVDARCVFVVDEGYEPPQGVV-------QIVEDDDGVFVDGGLHRWTLEELVCDIVSSESPSSRVVAFVPPTPHSPLPSQDPNERKAGLWIWGLFEEPLYPYMLLSFDV-------------NRVEVRE--GGYHVPAGKLFGEMRHARGSKSGHV-LSDGRLSFKVTKTYQADLVGLSK-VSVGEPTECGRVRL 248
BLAST of EWM21333.1 vs. NCBI_GenBank
Match: gi|1210528821|dbj|GAX12464.1| (hypothetical protein FisN_24Hh038 [Fistulifera solaris]) HSP 1 Score: 75.485 bits (184), Expect = 4.756e-13 Identity = 48/147 (32.65%), Postives = 72/147 (48.98%), Query Frame = 0
Query: 101 RIFVERDPLALIDTDEKGFALGPAPAWTLSEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCLTEVDEEGERRKELRPVFGGTG-IPGNRLNFRFNHVRQDGAVSLSEGQLTFKEVEMRKVDPLGIGGVVNVGDVKDAGEAQLRP 246
R+ + D I +++ + + W LSED NDR+ GLW+WGLF EPL+P+L +L D L P GT +P +L + NH R +G V L L ++++E + DPLG V++ D G L+P
Sbjct: 62 RLVMRGDIENAIKHEKQHDKINNSSRWILSEDPNDRKDGLWVWGLFKEPLYPFLLLTLQTDDIPL--------------PNNNGTDFVPAMQLYAQVNHRRDEGKVILEGKDLCWRQMETVRADPLG-AATVDLYDNVVVGTIALQP 193
BLAST of EWM21333.1 vs. NCBI_GenBank
Match: gi|397585841|gb|EJK53411.1| (hypothetical protein THAOC_27162 [Thalassiosira oceanica]) HSP 1 Score: 72.4034 bits (176), Expect = 1.271e-11 Identity = 66/239 (27.62%), Postives = 105/239 (43.93%), Query Frame = 0
Query: 21 HAFVVRLSKSSVLAPLASTSSPPPPTTTSPSSTGASKKASLSSNVPWDLSVVIKKEGYSD-IQADFRI-----RFVTEPGYEPPQGRIFV-ERDPLALIDTDEKGFALGPAPA--WTLSEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCL-TEVDEEGERRKELRPVFGGTGIPGNRLNFRFNHVR-QDGAVSLSEGQLTFKEVEMRKVDPLGIGGVVNVGDVKDAGEAQLRPVL 248
HAF AP + S TT+ S A+ + +L+ W L +++ S + D ++ F+ E GYEPPQG ER + D E + + W LSED +D + GLWIWGLF EPL+P++ + L + +DEE + IP +L + NH R +D V L L + +E ++ G V++ + + G+ +P+L
Sbjct: 19 HAFT---------APNTAKRSKNAATTSLFMSETATARTTLTDETTWRLRLLLNDVTSSKGAKLDGKLFVIEGSFIEEEGYEPPQGTFVANERRSSSGEDLSESDTTILKVKSSRWKLSEDPDDPKDGLWIWGLFKEPLYPFMLLQIETEKLTLPSGIDEEAD------------SIPPLKLFAQINHARKEDVGVELQAANLNVRILEQIQLP----GASVDLYEEEPVGQISFQPLL 232
BLAST of EWM21333.1 vs. NCBI_GenBank
Match: gi|1072223135|gb|OEU07892.1| (hypothetical protein FRACYDRAFT_271884 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 70.8626 bits (172), Expect = 3.014e-11 Identity = 65/221 (29.41%), Postives = 94/221 (42.53%), Query Frame = 0
Query: 59 ASLSSNVPWDLSVVI--------KKEGYSDIQADFRIRFVTEPGYEPPQG---RIFVER-------------------DPLALIDTDEKGFALGPAPAWTLSEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCLTEVDEEGERRKELRPVFGGTGIPGNRLNFRFNHVR-QDGAVSLS-EGQLTFKEVEMRKVDPLGIGGVVNVGDVKDAGEAQLRPV 247
A+L+ W+ + + KK G I A + +F+ EPGYEPPQG +IF D +L T + G WTLSED NDR+ LWIWGLF EPL+P+L + + + G ++P +L + NH R ++G V L + +E E K DP G V+ D G+ QL+ +
Sbjct: 2 ATLTEETTWNFRMALSNLPTEKGKKAGVDGIFA-IQAKFIEEPGYEPPQGIIQQIFEVASSSEEVVEVETTPEEDGVVDTSSLPTTTQMTIKSG---RWTLSEDPNDRKDSLWIWGLFKEPLYPFLLLNFEI-----DRISLPGGEDDSIKPF---------QLYAQVNHKRGENGEVMLDLVSDINIREKESFKADPFGAANVLIDIDTS-IGQLQLQAM 203
BLAST of EWM21333.1 vs. NCBI_GenBank
Match: gi|224004854|ref|XP_002296078.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|209586110|gb|ACI64795.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 67.0106 bits (162), Expect = 7.547e-10 Identity = 47/163 (28.83%), Postives = 77/163 (47.24%), Query Frame = 0
Query: 88 RFVTEPGYEPPQG--RIFVERDPLALIDTDEKGFALGPAPAWTLSEDKNDRQWGLWIWGLFDEPLFPYLYFSLPVLDDCLTEVDEEGERRKELRPVFGGTGIPGNRLNFRFNHVR-QDGAVSLSEGQLTFKEVEMRKVDPLGIGGVVNVGDVKDAGEAQLRPV 247
F+ E GYEPPQG R F + D WTLSED ND++ GLWIWGLF EPL+P++ + + E+ ++ ++ R IP +L + H+R ++ V L L + +E ++ G V++ + + G+ +P+
Sbjct: 61 HFIEEEGYEPPQGLFRPFAKERVEGGTGKDNAMVLEVIRSRWTLSEDPNDKKDGLWIWGLFKEPLYPFMLLQIETKE---LELPSGTQQAQDGREDIKSDTIPPLKLYAQVTHIRNEEVGVELKTANLNVRVLEKIQLP----GASVDLYEEERVGQVSFQPL 216 The following BLAST results are available for this feature:
BLAST of EWM21333.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|