EWM21352.1, cds9322 (CDS) Nannochloropsis gaditana

Overview
NameEWM21352.1
Unique Namecds9322
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:42937..43255 -
Alignment locationKK037253.1:42176..42855 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21352.1
Productproteasome subunit beta type-6
Orig transcript idgnl|cribi|Naga_100075g24.2886.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:42937..43255 -
KK037253.1supercontigKK037253.1:42176..42855 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004298threonine-type endopeptidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0016020membrane
GO:0005839proteasome core complex
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR029055Ntn_hydrolases_N
IPR001353Proteasome_sua/b
Homology
BLAST of EWM21352.1 vs. NCBI_GenBank
Match: gi|585101537|gb|EWM21352.1| (proteasome subunit beta type-6 [Nannochloropsis gaditana])

HSP 1 Score: 684.485 bits (1765), Expect = 0.000e+0
Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0
Query:    1 MSQRHTSCAPTPSRIKRHGLCMGRILCMLLFFFPVITVAVSRPGQEYPRGSSFNLGLIDDNANDGANAGLGAGGVDFLGGLSTGTTMVAAKYKDGVVVGADSRSVKNGRYVADRFTDKVQQVSEYVVLVCSGRTAVVQRLNQEIAARLRFYQIQHQRLPTSRHAAAVLRILMRMGLEPVEEKQQRNDKTQVTMDTDALAAGWSPREGPRIHQVLTGGTVLEARDYAVAGHGADYIVGFMDAHYPQVEEAGKALAHAGMSKEDCEEIVRRAMALAVGRDTQSGEGVTIAVVNPQGTTKRVLSTAELQRSLKKALSVVQATENRKEKEREGATP 332
            MSQRHTSCAPTPSRIKRHGLCMGRILCMLLFFFPVITVAVSRPGQEYPRGSSFNLGLIDDNANDGANAGLGAGGVDFLGGLSTGTTMVAAKYKDGVVVGADSRSVKNGRYVADRFTDKVQQVSEYVVLVCSGRTAVVQRLNQEIAARLRFYQIQHQRLPTSRHAAAVLRILMRMGLEPVEEKQQRNDKTQVTMDTDALAAGWSPREGPRIHQVLTGGTVLEARDYAVAGHGADYIVGFMDAHYPQVEEAGKALAHAGMSKEDCEEIVRRAMALAVGRDTQSGEGVTIAVVNPQGTTKRVLSTAELQRSLKKALSVVQATENRKEKEREGATP
Sbjct:    1 MSQRHTSCAPTPSRIKRHGLCMGRILCMLLFFFPVITVAVSRPGQEYPRGSSFNLGLIDDNANDGANAGLGAGGVDFLGGLSTGTTMVAAKYKDGVVVGADSRSVKNGRYVADRFTDKVQQVSEYVVLVCSGRTAVVQRLNQEIAARLRFYQIQHQRLPTSRHAAAVLRILMRMGLEPVEEKQQRNDKTQVTMDTDALAAGWSPREGPRIHQVLTGGTVLEARDYAVAGHGADYIVGFMDAHYPQVEEAGKALAHAGMSKEDCEEIVRRAMALAVGRDTQSGEGVTIAVVNPQGTTKRVLSTAELQRSLKKALSVVQATENRKEKEREGATP 332          
BLAST of EWM21352.1 vs. NCBI_GenBank
Match: gi|543381261|ref|XP_005533824.1| (PREDICTED: proteasome subunit beta type-6 [Pseudopodoces humilis] >gi|998744509|ref|XP_015471755.1| PREDICTED: proteasome subunit beta type-6 [Parus major])

HSP 1 Score: 123.25 bits (308), Expect = 7.678e-30
Identity = 75/225 (33.33%), Postives = 120/225 (53.33%), Query Frame = 0
Query:   81 LSTGTTMVAAKYKDGVVVGADSRSVKNGRYVADRFTDKVQQVSEYVVLVCSGRTAVVQRLNQEIAARLRFYQIQHQRLPTSRHAAAVLRILMRMGLEPVEEKQQRNDKTQVTMDTDALAAGWSPREGPRIHQVLTGGTVLEARDYAVAGHGADYIVGFMDAHYPQVEEAGKALAHAGMSKEDCEEIVRRAMALAVGRDTQSGEGVTIAVVNPQGTTKRVLSTAEL 305
            +STGTT++A ++  GVV+GADSR+   G Y+A+R TDK+  V + +    SG  A  Q +   +A +L F+ ++ +  P  R AA +               QQ   + +  +    + AGW PR G +++ V  GG +L  + +AV G G+ YI GF+DA +             GMS+  C+E V RA+ALA+ RD  SG  + +A +  +G  + VL+ ++L
Sbjct:   27 VSTGTTIMAVEFDGGVVIGADSRTT-TGSYIANRVTDKLTPVHDRIFCCRSGSAADTQAVADAVAYQLAFHSVELEEPPRVRTAARLF--------------QQSCYRYREELSAGIIVAGWDPRRGGQVYVVPMGGLLLR-QPFAVGGSGSSYIYGFLDATF-----------QPGMSRSQCQEFVARALALAMVRDGSSGGVIRLAAITKEGVERTVLAGSDL 224          
BLAST of EWM21352.1 vs. NCBI_GenBank
Match: gi|971448228|ref|XP_015129007.1| (PREDICTED: proteasome subunit beta type-6-like [Gallus gallus])

HSP 1 Score: 124.02 bits (310), Expect = 8.189e-30
Identity = 78/225 (34.67%), Postives = 119/225 (52.89%), Query Frame = 0
Query:   81 LSTGTTMVAAKYKDGVVVGADSRSVKNGRYVADRFTDKVQQVSEYVVLVCSGRTAVVQRLNQEIAARLRFYQIQHQRLPTSRHAAAVLRILMRMGLEPVEEKQQRNDKTQVTMDTDALAAGWSPREGPRIHQVLTGGTVLEARDYAVAGHGADYIVGFMDAHYPQVEEAGKALAHAGMSKEDCEEIVRRAMALAVGRDTQSGEGVTIAVVNPQGTTKRVLSTAEL 305
            +STGTT++A ++  GVV+GADSR+   G YVA+R TDK+  V   +    SG  A  Q +   +A +L F+ I+ +  P  R AA +               QQ   + +  +    + AGW  R G +++ V  GG +L  + +AV G G+ YI GF+DA + +           GMS+E+CEE   RA++LA+ RD  SG  + +A +   G  +RVL+  EL
Sbjct:   55 VSTGTTIMAVEFDGGVVIGADSRTT-TGSYVANRVTDKLTAVHHRIFCCRSGSAADTQAVADAVAYQLAFHSIELEEPPRVRTAACLF--------------QQSCYRYREELSAGIIVAGWDRRRGGQVYVVPMGGMLLR-QPFAVGGSGSSYIYGFVDAAFRR-----------GMSREECEEFTARALSLAMARDGSSGGVIRLAAITEAGVERRVLAGPEL 252          
BLAST of EWM21352.1 vs. NCBI_GenBank
Match: gi|224144619|ref|XP_002187722.1| (PREDICTED: proteasome subunit beta type-6 [Taeniopygia guttata])

HSP 1 Score: 122.479 bits (306), Expect = 1.258e-29
Identity = 75/225 (33.33%), Postives = 120/225 (53.33%), Query Frame = 0
Query:   81 LSTGTTMVAAKYKDGVVVGADSRSVKNGRYVADRFTDKVQQVSEYVVLVCSGRTAVVQRLNQEIAARLRFYQIQHQRLPTSRHAAAVLRILMRMGLEPVEEKQQRNDKTQVTMDTDALAAGWSPREGPRIHQVLTGGTVLEARDYAVAGHGADYIVGFMDAHYPQVEEAGKALAHAGMSKEDCEEIVRRAMALAVGRDTQSGEGVTIAVVNPQGTTKRVLSTAEL 305
            +STGTT++A ++  GVV+GADSR+   G Y+A+R TDK+  V + +    SG  A  Q +   +A +L F+ ++ +  P  R AA +               QQ   + +  +    + AGW PR G +++ V  GG +L  + +AV G G+ YI GF+DA +             GMS+  C+E V RA+ALA+ RD  SG  + +A +  +G  + VL+ ++L
Sbjct:   27 VSTGTTIMAVEFDGGVVIGADSRT-TTGAYIANRVTDKLTPVHDRIFCCRSGSAADTQAVADAVAYQLAFHSVELEEPPRVRTAARLF--------------QQSCYRYREELSAGIIVAGWDPRRGGQVYVVPMGGLLLR-QPFAVGGSGSSYIYGFLDATF-----------QPGMSRSQCQEFVARALALAMVRDGSSGGVIRLAAITEEGVERTVLAGSDL 224          
BLAST of EWM21352.1 vs. NCBI_GenBank
Match: gi|1210026631|ref|XP_021407994.1| (proteasome subunit beta type-6 [Lonchura striata domestica] >gi|1208022619|gb|OWK49680.1| Proteasome subunit beta type-6 [Lonchura striata domestica])

HSP 1 Score: 122.479 bits (306), Expect = 1.635e-29
Identity = 75/225 (33.33%), Postives = 120/225 (53.33%), Query Frame = 0
Query:   81 LSTGTTMVAAKYKDGVVVGADSRSVKNGRYVADRFTDKVQQVSEYVVLVCSGRTAVVQRLNQEIAARLRFYQIQHQRLPTSRHAAAVLRILMRMGLEPVEEKQQRNDKTQVTMDTDALAAGWSPREGPRIHQVLTGGTVLEARDYAVAGHGADYIVGFMDAHYPQVEEAGKALAHAGMSKEDCEEIVRRAMALAVGRDTQSGEGVTIAVVNPQGTTKRVLSTAEL 305
            +STGTT++A ++  GVV+GADSR+   G Y+A+R TDK+  V + +    SG  A  Q +   +A +L F+ ++ +  P  R AA +               QQ   + +  +    + AGW PR G +++ V  GG +L  + +AV G G+ YI GF+DA +             GMS+  C+E V RA+ALA+ RD  SG  + +A +  +G  + VL+ ++L
Sbjct:   27 VSTGTTIMAVEFDGGVVIGADSRTT-TGAYIANRVTDKLTPVHDRIFCCRSGSAADTQAVADAVAYQLAFHSVELEEPPRVRTAARLF--------------QQSCYRYREELSAGIIVAGWDPRRGGQVYVVPMGGLLLR-QPFAVGGSGSSYIYGFLDATF-----------KPGMSRSQCQEFVARALALAMVRDGSSGGVIRLAAITEEGVERTVLAGSDL 224          
BLAST of EWM21352.1 vs. NCBI_GenBank
Match: gi|1051223060|ref|XP_017695047.1| (PREDICTED: proteasome subunit beta type-6 [Lepidothrix coronata])

HSP 1 Score: 121.324 bits (303), Expect = 4.429e-29
Identity = 75/225 (33.33%), Postives = 119/225 (52.89%), Query Frame = 0
Query:   81 LSTGTTMVAAKYKDGVVVGADSRSVKNGRYVADRFTDKVQQVSEYVVLVCSGRTAVVQRLNQEIAARLRFYQIQHQRLPTSRHAAAVLRILMRMGLEPVEEKQQRNDKTQVTMDTDALAAGWSPREGPRIHQVLTGGTVLEARDYAVAGHGADYIVGFMDAHYPQVEEAGKALAHAGMSKEDCEEIVRRAMALAVGRDTQSGEGVTIAVVNPQGTTKRVLSTAEL 305
            +STGTT++A ++  GVV+GADSR+   G YVA+R TDK+  V + +    SG  A  Q +   +A +L F+ ++ +  P  R AA +               QQ   + +  +    + AGW PR G +++ V  GG +L  + +AV G G+ YI G++DA +             GMS+  C+E V RA+ALA+ RD  SG  + +A +  +G  + VL+  +L
Sbjct:   27 VSTGTTIMAVEFDGGVVIGADSRTT-TGSYVANRVTDKLTPVHDRIFCCRSGSAADTQAVADAVAYQLAFHSVELEEPPRVRTAARLF--------------QQSCYRYREELSAGIIVAGWDPRRGGQVYVVPLGGLLLR-QPFAVGGSGSSYIYGYLDATF-----------QPGMSRSQCQEFVARALALAMVRDGSSGGVIRLAAITEEGVERTVLAGPDL 224          
BLAST of EWM21352.1 vs. NCBI_GenBank
Match: gi|929522179|ref|XP_014130386.1| (PREDICTED: proteasome subunit beta type-6 [Zonotrichia albicollis])

HSP 1 Score: 120.939 bits (302), Expect = 4.816e-29
Identity = 74/225 (32.89%), Postives = 119/225 (52.89%), Query Frame = 0
Query:   81 LSTGTTMVAAKYKDGVVVGADSRSVKNGRYVADRFTDKVQQVSEYVVLVCSGRTAVVQRLNQEIAARLRFYQIQHQRLPTSRHAAAVLRILMRMGLEPVEEKQQRNDKTQVTMDTDALAAGWSPREGPRIHQVLTGGTVLEARDYAVAGHGADYIVGFMDAHYPQVEEAGKALAHAGMSKEDCEEIVRRAMALAVGRDTQSGEGVTIAVVNPQGTTKRVLSTAEL 305
            +STGTT++A ++  GVV+GADSR+   G Y+A+R TDK+  V + +    SG  A  Q +   +A +L F+ ++ +  P  R AA +               QQ   + +  +    + AGW PR G +++ V  GG +L  + +AV G G+ YI GF+DA +             GMS+  C+E V R +ALA+ RD  SG  + +A +  +G  + VL+ ++L
Sbjct:   27 VSTGTTIMAVEFDGGVVIGADSRT-TTGAYIANRVTDKLTPVHDRIFCCRSGSAADTQAVADAVAYQLAFHSVELEEPPRVRTAARLF--------------QQSCYRYREELSAGIIVAGWDPRRGGQVYVVPMGGLLLR-QPFAVGGSGSSYIYGFLDATF-----------QPGMSRSQCQEFVARGLALAMVRDGSSGGVIRLAAITEEGVERTVLAGSDL 224          
BLAST of EWM21352.1 vs. NCBI_GenBank
Match: gi|727133894|emb|CEG82804.1| (Putative Proteasome subunit beta type [Rhizopus microsporus] >gi|727143055|emb|CEG74550.1| Putative Proteasome subunit beta type [Rhizopus microsporus] >gi|729701959|emb|CEJ01186.1| Putative Proteasome subunit beta type [Rhizopus microsporus] >gi|1178046459|gb|ORE02212.1| proteasome subunit beta type-6 [Rhizopus microsporus var. microsporus])

HSP 1 Score: 119.783 bits (299), Expect = 7.458e-29
Identity = 71/227 (31.28%), Postives = 119/227 (52.42%), Query Frame = 0
Query:   79 GGLSTGTTMVAAKYKDGVVVGADSRSVKNGRYVADRFTDKVQQVSEYVVLVCSGRTAVVQRLNQEIAARLRFYQIQHQRLPTSRHAAAVLRILMRMGLEPVEEKQQRNDKTQVTMDTDALAAGWSPREGPRIHQVLTGGTVLEARDYAVAGHGADYIVGFMDAHYPQVEEAGKALAHAGMSKEDCEEIVRRAMALAVGRDTQSGEGVTIAVVNPQGTTKRVLSTAEL 305
            G ++ GT+++A  YKDGV++GADSR+   G Y+A+R TDK+ +V + +    SG  A  Q +   +   L+ Y +   + P+ R AAA+ + L            Q  D     +    + AGW  ++GP ++ +  GG++ +A  +A+ G G+ YI G+ DA Y              M++E+CEE V+ ++ALA+ RD  SG  + +AV+   G  +  +   EL
Sbjct:    6 GEVNLGTSIMAVAYKDGVILGADSRTT-TGAYIANRVTDKLTKVHDKIYCCRSGSAADTQAVADIVHYYLQMYSVSEDQAPSVRTAAALFQELC----------YQNKDNLMAGI----IVAGWDDKDGPSVYNIPLGGSLHKAP-FAIGGSGSTYIYGYCDAKYKD-----------NMTREECEEFVKNSLALAMSRDGSSGGVIRMAVITKDGVERLFVPGNEL 205          
BLAST of EWM21352.1 vs. NCBI_GenBank
Match: gi|1044567110|ref|XP_017419887.1| (PREDICTED: proteasome subunit beta type-6 isoform X2 [Vigna angularis])

HSP 1 Score: 120.168 bits (300), Expect = 9.127e-29
Identity = 77/231 (33.33%), Postives = 125/231 (54.11%), Query Frame = 0
Query:   75 VDFLGGLSTGTTMVAAKYKDGVVVGADSRSVKNGRYVADRFTDKVQQVSEYVVLVCSGRTAVVQRLNQEIAARLRFYQIQHQRLPTSRHAAAVLRILMRMGLEPVEEKQQRNDKTQVTMDTDALAAGWSPREGPRIHQVLTGGTVLEARDYAVAGHGADYIVGFMDAHYPQVEEAGKALAHAGMSKEDCEEIVRRAMALAVGRDTQSGEGVTIAVVNPQGTTKRVLSTAEL 305
            VDF    S GTT++   YKDGVV+GADSR+   G YVA+R +DK+ Q+++ V +  SG  A  Q ++  +   L  + IQ  +  T + AA ++R+L              N+K    ++T  +  GW   EG +I  V  GGT+++ + +A+ G G+ Y+ GF D  + +           GMSKE+ E++V++A++LA+ RD  SG  V   ++N +G T+      +L
Sbjct:    5 VDFSAPHSIGTTIIGVTYKDGVVLGADSRT-STGVYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLL------------SYNNKN--FLETGLIVGGWDKYEGGQIFGVPLGGTIVQ-QPFAIGGSGSSYLYGFFDQAWKE-----------GMSKEEAEDLVKKAVSLAIARDGASGGVVRTVIINSEGVTRNFYPGDQL 208          
BLAST of EWM21352.1 vs. NCBI_GenBank
Match: gi|950965127|ref|XP_014498769.1| (PREDICTED: proteasome subunit beta type-6 [Vigna radiata var. radiata] >gi|1044567108|ref|XP_017419886.1| PREDICTED: proteasome subunit beta type-6 isoform X1 [Vigna angularis] >gi|920698656|gb|KOM41881.1| hypothetical protein LR48_Vigan04g207900 [Vigna angularis] >gi|965662564|dbj|BAT78273.1| hypothetical protein VIGAN_02093100 [Vigna angularis var. angularis])

HSP 1 Score: 120.168 bits (300), Expect = 9.518e-29
Identity = 77/231 (33.33%), Postives = 125/231 (54.11%), Query Frame = 0
Query:   75 VDFLGGLSTGTTMVAAKYKDGVVVGADSRSVKNGRYVADRFTDKVQQVSEYVVLVCSGRTAVVQRLNQEIAARLRFYQIQHQRLPTSRHAAAVLRILMRMGLEPVEEKQQRNDKTQVTMDTDALAAGWSPREGPRIHQVLTGGTVLEARDYAVAGHGADYIVGFMDAHYPQVEEAGKALAHAGMSKEDCEEIVRRAMALAVGRDTQSGEGVTIAVVNPQGTTKRVLSTAEL 305
            VDF    S GTT++   YKDGVV+GADSR+   G YVA+R +DK+ Q+++ V +  SG  A  Q ++  +   L  + IQ  +  T + AA ++R+L              N+K    ++T  +  GW   EG +I  V  GGT+++ + +A+ G G+ Y+ GF D  + +           GMSKE+ E++V++A++LA+ RD  SG  V   ++N +G T+      +L
Sbjct:    5 VDFSAPHSMGTTIIGVTYKDGVVLGADSRT-STGVYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLL------------SYNNKN--FLETGLIVGGWDKYEGGQIFGVPLGGTIVQ-QPFAIGGSGSSYLYGFFDQAWKE-----------GMSKEEAEDLVKKAVSLAIARDGASGGVVRTVIINSEGVTRNFYPGDQL 208          
The following BLAST results are available for this feature:
BLAST of EWM21352.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101537|gb|EWM21352.1|0.000e+0100.00proteasome subunit beta type-6 [Nannochloropsis ga... [more]
gi|543381261|ref|XP_005533824.1|7.678e-3033.33PREDICTED: proteasome subunit beta type-6 [Pseudop... [more]
gi|971448228|ref|XP_015129007.1|8.189e-3034.67PREDICTED: proteasome subunit beta type-6-like [Ga... [more]
gi|224144619|ref|XP_002187722.1|1.258e-2933.33PREDICTED: proteasome subunit beta type-6 [Taeniop... [more]
gi|1210026631|ref|XP_021407994.1|1.635e-2933.33proteasome subunit beta type-6 [Lonchura striata d... [more]
gi|1051223060|ref|XP_017695047.1|4.429e-2933.33PREDICTED: proteasome subunit beta type-6 [Lepidot... [more]
gi|929522179|ref|XP_014130386.1|4.816e-2932.89PREDICTED: proteasome subunit beta type-6 [Zonotri... [more]
gi|727133894|emb|CEG82804.1|7.458e-2931.28Putative Proteasome subunit beta type [Rhizopus mi... [more]
gi|1044567110|ref|XP_017419887.1|9.127e-2933.33PREDICTED: proteasome subunit beta type-6 isoform ... [more]
gi|950965127|ref|XP_014498769.1|9.518e-2933.33PREDICTED: proteasome subunit beta type-6 [Vigna r... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9352rna9352Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications