EWM21352.1, cds9322 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21352.1 vs. NCBI_GenBank
Match: gi|585101537|gb|EWM21352.1| (proteasome subunit beta type-6 [Nannochloropsis gaditana]) HSP 1 Score: 684.485 bits (1765), Expect = 0.000e+0 Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0
Query: 1 MSQRHTSCAPTPSRIKRHGLCMGRILCMLLFFFPVITVAVSRPGQEYPRGSSFNLGLIDDNANDGANAGLGAGGVDFLGGLSTGTTMVAAKYKDGVVVGADSRSVKNGRYVADRFTDKVQQVSEYVVLVCSGRTAVVQRLNQEIAARLRFYQIQHQRLPTSRHAAAVLRILMRMGLEPVEEKQQRNDKTQVTMDTDALAAGWSPREGPRIHQVLTGGTVLEARDYAVAGHGADYIVGFMDAHYPQVEEAGKALAHAGMSKEDCEEIVRRAMALAVGRDTQSGEGVTIAVVNPQGTTKRVLSTAELQRSLKKALSVVQATENRKEKEREGATP 332
MSQRHTSCAPTPSRIKRHGLCMGRILCMLLFFFPVITVAVSRPGQEYPRGSSFNLGLIDDNANDGANAGLGAGGVDFLGGLSTGTTMVAAKYKDGVVVGADSRSVKNGRYVADRFTDKVQQVSEYVVLVCSGRTAVVQRLNQEIAARLRFYQIQHQRLPTSRHAAAVLRILMRMGLEPVEEKQQRNDKTQVTMDTDALAAGWSPREGPRIHQVLTGGTVLEARDYAVAGHGADYIVGFMDAHYPQVEEAGKALAHAGMSKEDCEEIVRRAMALAVGRDTQSGEGVTIAVVNPQGTTKRVLSTAELQRSLKKALSVVQATENRKEKEREGATP
Sbjct: 1 MSQRHTSCAPTPSRIKRHGLCMGRILCMLLFFFPVITVAVSRPGQEYPRGSSFNLGLIDDNANDGANAGLGAGGVDFLGGLSTGTTMVAAKYKDGVVVGADSRSVKNGRYVADRFTDKVQQVSEYVVLVCSGRTAVVQRLNQEIAARLRFYQIQHQRLPTSRHAAAVLRILMRMGLEPVEEKQQRNDKTQVTMDTDALAAGWSPREGPRIHQVLTGGTVLEARDYAVAGHGADYIVGFMDAHYPQVEEAGKALAHAGMSKEDCEEIVRRAMALAVGRDTQSGEGVTIAVVNPQGTTKRVLSTAELQRSLKKALSVVQATENRKEKEREGATP 332
BLAST of EWM21352.1 vs. NCBI_GenBank
Match: gi|543381261|ref|XP_005533824.1| (PREDICTED: proteasome subunit beta type-6 [Pseudopodoces humilis] >gi|998744509|ref|XP_015471755.1| PREDICTED: proteasome subunit beta type-6 [Parus major]) HSP 1 Score: 123.25 bits (308), Expect = 7.678e-30 Identity = 75/225 (33.33%), Postives = 120/225 (53.33%), Query Frame = 0
Query: 81 LSTGTTMVAAKYKDGVVVGADSRSVKNGRYVADRFTDKVQQVSEYVVLVCSGRTAVVQRLNQEIAARLRFYQIQHQRLPTSRHAAAVLRILMRMGLEPVEEKQQRNDKTQVTMDTDALAAGWSPREGPRIHQVLTGGTVLEARDYAVAGHGADYIVGFMDAHYPQVEEAGKALAHAGMSKEDCEEIVRRAMALAVGRDTQSGEGVTIAVVNPQGTTKRVLSTAEL 305
+STGTT++A ++ GVV+GADSR+ G Y+A+R TDK+ V + + SG A Q + +A +L F+ ++ + P R AA + QQ + + + + AGW PR G +++ V GG +L + +AV G G+ YI GF+DA + GMS+ C+E V RA+ALA+ RD SG + +A + +G + VL+ ++L
Sbjct: 27 VSTGTTIMAVEFDGGVVIGADSRTT-TGSYIANRVTDKLTPVHDRIFCCRSGSAADTQAVADAVAYQLAFHSVELEEPPRVRTAARLF--------------QQSCYRYREELSAGIIVAGWDPRRGGQVYVVPMGGLLLR-QPFAVGGSGSSYIYGFLDATF-----------QPGMSRSQCQEFVARALALAMVRDGSSGGVIRLAAITKEGVERTVLAGSDL 224
BLAST of EWM21352.1 vs. NCBI_GenBank
Match: gi|971448228|ref|XP_015129007.1| (PREDICTED: proteasome subunit beta type-6-like [Gallus gallus]) HSP 1 Score: 124.02 bits (310), Expect = 8.189e-30 Identity = 78/225 (34.67%), Postives = 119/225 (52.89%), Query Frame = 0
Query: 81 LSTGTTMVAAKYKDGVVVGADSRSVKNGRYVADRFTDKVQQVSEYVVLVCSGRTAVVQRLNQEIAARLRFYQIQHQRLPTSRHAAAVLRILMRMGLEPVEEKQQRNDKTQVTMDTDALAAGWSPREGPRIHQVLTGGTVLEARDYAVAGHGADYIVGFMDAHYPQVEEAGKALAHAGMSKEDCEEIVRRAMALAVGRDTQSGEGVTIAVVNPQGTTKRVLSTAEL 305
+STGTT++A ++ GVV+GADSR+ G YVA+R TDK+ V + SG A Q + +A +L F+ I+ + P R AA + QQ + + + + AGW R G +++ V GG +L + +AV G G+ YI GF+DA + + GMS+E+CEE RA++LA+ RD SG + +A + G +RVL+ EL
Sbjct: 55 VSTGTTIMAVEFDGGVVIGADSRTT-TGSYVANRVTDKLTAVHHRIFCCRSGSAADTQAVADAVAYQLAFHSIELEEPPRVRTAACLF--------------QQSCYRYREELSAGIIVAGWDRRRGGQVYVVPMGGMLLR-QPFAVGGSGSSYIYGFVDAAFRR-----------GMSREECEEFTARALSLAMARDGSSGGVIRLAAITEAGVERRVLAGPEL 252
BLAST of EWM21352.1 vs. NCBI_GenBank
Match: gi|224144619|ref|XP_002187722.1| (PREDICTED: proteasome subunit beta type-6 [Taeniopygia guttata]) HSP 1 Score: 122.479 bits (306), Expect = 1.258e-29 Identity = 75/225 (33.33%), Postives = 120/225 (53.33%), Query Frame = 0
Query: 81 LSTGTTMVAAKYKDGVVVGADSRSVKNGRYVADRFTDKVQQVSEYVVLVCSGRTAVVQRLNQEIAARLRFYQIQHQRLPTSRHAAAVLRILMRMGLEPVEEKQQRNDKTQVTMDTDALAAGWSPREGPRIHQVLTGGTVLEARDYAVAGHGADYIVGFMDAHYPQVEEAGKALAHAGMSKEDCEEIVRRAMALAVGRDTQSGEGVTIAVVNPQGTTKRVLSTAEL 305
+STGTT++A ++ GVV+GADSR+ G Y+A+R TDK+ V + + SG A Q + +A +L F+ ++ + P R AA + QQ + + + + AGW PR G +++ V GG +L + +AV G G+ YI GF+DA + GMS+ C+E V RA+ALA+ RD SG + +A + +G + VL+ ++L
Sbjct: 27 VSTGTTIMAVEFDGGVVIGADSRT-TTGAYIANRVTDKLTPVHDRIFCCRSGSAADTQAVADAVAYQLAFHSVELEEPPRVRTAARLF--------------QQSCYRYREELSAGIIVAGWDPRRGGQVYVVPMGGLLLR-QPFAVGGSGSSYIYGFLDATF-----------QPGMSRSQCQEFVARALALAMVRDGSSGGVIRLAAITEEGVERTVLAGSDL 224
BLAST of EWM21352.1 vs. NCBI_GenBank
Match: gi|1210026631|ref|XP_021407994.1| (proteasome subunit beta type-6 [Lonchura striata domestica] >gi|1208022619|gb|OWK49680.1| Proteasome subunit beta type-6 [Lonchura striata domestica]) HSP 1 Score: 122.479 bits (306), Expect = 1.635e-29 Identity = 75/225 (33.33%), Postives = 120/225 (53.33%), Query Frame = 0
Query: 81 LSTGTTMVAAKYKDGVVVGADSRSVKNGRYVADRFTDKVQQVSEYVVLVCSGRTAVVQRLNQEIAARLRFYQIQHQRLPTSRHAAAVLRILMRMGLEPVEEKQQRNDKTQVTMDTDALAAGWSPREGPRIHQVLTGGTVLEARDYAVAGHGADYIVGFMDAHYPQVEEAGKALAHAGMSKEDCEEIVRRAMALAVGRDTQSGEGVTIAVVNPQGTTKRVLSTAEL 305
+STGTT++A ++ GVV+GADSR+ G Y+A+R TDK+ V + + SG A Q + +A +L F+ ++ + P R AA + QQ + + + + AGW PR G +++ V GG +L + +AV G G+ YI GF+DA + GMS+ C+E V RA+ALA+ RD SG + +A + +G + VL+ ++L
Sbjct: 27 VSTGTTIMAVEFDGGVVIGADSRTT-TGAYIANRVTDKLTPVHDRIFCCRSGSAADTQAVADAVAYQLAFHSVELEEPPRVRTAARLF--------------QQSCYRYREELSAGIIVAGWDPRRGGQVYVVPMGGLLLR-QPFAVGGSGSSYIYGFLDATF-----------KPGMSRSQCQEFVARALALAMVRDGSSGGVIRLAAITEEGVERTVLAGSDL 224
BLAST of EWM21352.1 vs. NCBI_GenBank
Match: gi|1051223060|ref|XP_017695047.1| (PREDICTED: proteasome subunit beta type-6 [Lepidothrix coronata]) HSP 1 Score: 121.324 bits (303), Expect = 4.429e-29 Identity = 75/225 (33.33%), Postives = 119/225 (52.89%), Query Frame = 0
Query: 81 LSTGTTMVAAKYKDGVVVGADSRSVKNGRYVADRFTDKVQQVSEYVVLVCSGRTAVVQRLNQEIAARLRFYQIQHQRLPTSRHAAAVLRILMRMGLEPVEEKQQRNDKTQVTMDTDALAAGWSPREGPRIHQVLTGGTVLEARDYAVAGHGADYIVGFMDAHYPQVEEAGKALAHAGMSKEDCEEIVRRAMALAVGRDTQSGEGVTIAVVNPQGTTKRVLSTAEL 305
+STGTT++A ++ GVV+GADSR+ G YVA+R TDK+ V + + SG A Q + +A +L F+ ++ + P R AA + QQ + + + + AGW PR G +++ V GG +L + +AV G G+ YI G++DA + GMS+ C+E V RA+ALA+ RD SG + +A + +G + VL+ +L
Sbjct: 27 VSTGTTIMAVEFDGGVVIGADSRTT-TGSYVANRVTDKLTPVHDRIFCCRSGSAADTQAVADAVAYQLAFHSVELEEPPRVRTAARLF--------------QQSCYRYREELSAGIIVAGWDPRRGGQVYVVPLGGLLLR-QPFAVGGSGSSYIYGYLDATF-----------QPGMSRSQCQEFVARALALAMVRDGSSGGVIRLAAITEEGVERTVLAGPDL 224
BLAST of EWM21352.1 vs. NCBI_GenBank
Match: gi|929522179|ref|XP_014130386.1| (PREDICTED: proteasome subunit beta type-6 [Zonotrichia albicollis]) HSP 1 Score: 120.939 bits (302), Expect = 4.816e-29 Identity = 74/225 (32.89%), Postives = 119/225 (52.89%), Query Frame = 0
Query: 81 LSTGTTMVAAKYKDGVVVGADSRSVKNGRYVADRFTDKVQQVSEYVVLVCSGRTAVVQRLNQEIAARLRFYQIQHQRLPTSRHAAAVLRILMRMGLEPVEEKQQRNDKTQVTMDTDALAAGWSPREGPRIHQVLTGGTVLEARDYAVAGHGADYIVGFMDAHYPQVEEAGKALAHAGMSKEDCEEIVRRAMALAVGRDTQSGEGVTIAVVNPQGTTKRVLSTAEL 305
+STGTT++A ++ GVV+GADSR+ G Y+A+R TDK+ V + + SG A Q + +A +L F+ ++ + P R AA + QQ + + + + AGW PR G +++ V GG +L + +AV G G+ YI GF+DA + GMS+ C+E V R +ALA+ RD SG + +A + +G + VL+ ++L
Sbjct: 27 VSTGTTIMAVEFDGGVVIGADSRT-TTGAYIANRVTDKLTPVHDRIFCCRSGSAADTQAVADAVAYQLAFHSVELEEPPRVRTAARLF--------------QQSCYRYREELSAGIIVAGWDPRRGGQVYVVPMGGLLLR-QPFAVGGSGSSYIYGFLDATF-----------QPGMSRSQCQEFVARGLALAMVRDGSSGGVIRLAAITEEGVERTVLAGSDL 224
BLAST of EWM21352.1 vs. NCBI_GenBank
Match: gi|727133894|emb|CEG82804.1| (Putative Proteasome subunit beta type [Rhizopus microsporus] >gi|727143055|emb|CEG74550.1| Putative Proteasome subunit beta type [Rhizopus microsporus] >gi|729701959|emb|CEJ01186.1| Putative Proteasome subunit beta type [Rhizopus microsporus] >gi|1178046459|gb|ORE02212.1| proteasome subunit beta type-6 [Rhizopus microsporus var. microsporus]) HSP 1 Score: 119.783 bits (299), Expect = 7.458e-29 Identity = 71/227 (31.28%), Postives = 119/227 (52.42%), Query Frame = 0
Query: 79 GGLSTGTTMVAAKYKDGVVVGADSRSVKNGRYVADRFTDKVQQVSEYVVLVCSGRTAVVQRLNQEIAARLRFYQIQHQRLPTSRHAAAVLRILMRMGLEPVEEKQQRNDKTQVTMDTDALAAGWSPREGPRIHQVLTGGTVLEARDYAVAGHGADYIVGFMDAHYPQVEEAGKALAHAGMSKEDCEEIVRRAMALAVGRDTQSGEGVTIAVVNPQGTTKRVLSTAEL 305
G ++ GT+++A YKDGV++GADSR+ G Y+A+R TDK+ +V + + SG A Q + + L+ Y + + P+ R AAA+ + L Q D + + AGW ++GP ++ + GG++ +A +A+ G G+ YI G+ DA Y M++E+CEE V+ ++ALA+ RD SG + +AV+ G + + EL
Sbjct: 6 GEVNLGTSIMAVAYKDGVILGADSRTT-TGAYIANRVTDKLTKVHDKIYCCRSGSAADTQAVADIVHYYLQMYSVSEDQAPSVRTAAALFQELC----------YQNKDNLMAGI----IVAGWDDKDGPSVYNIPLGGSLHKAP-FAIGGSGSTYIYGYCDAKYKD-----------NMTREECEEFVKNSLALAMSRDGSSGGVIRMAVITKDGVERLFVPGNEL 205
BLAST of EWM21352.1 vs. NCBI_GenBank
Match: gi|1044567110|ref|XP_017419887.1| (PREDICTED: proteasome subunit beta type-6 isoform X2 [Vigna angularis]) HSP 1 Score: 120.168 bits (300), Expect = 9.127e-29 Identity = 77/231 (33.33%), Postives = 125/231 (54.11%), Query Frame = 0
Query: 75 VDFLGGLSTGTTMVAAKYKDGVVVGADSRSVKNGRYVADRFTDKVQQVSEYVVLVCSGRTAVVQRLNQEIAARLRFYQIQHQRLPTSRHAAAVLRILMRMGLEPVEEKQQRNDKTQVTMDTDALAAGWSPREGPRIHQVLTGGTVLEARDYAVAGHGADYIVGFMDAHYPQVEEAGKALAHAGMSKEDCEEIVRRAMALAVGRDTQSGEGVTIAVVNPQGTTKRVLSTAEL 305
VDF S GTT++ YKDGVV+GADSR+ G YVA+R +DK+ Q+++ V + SG A Q ++ + L + IQ + T + AA ++R+L N+K ++T + GW EG +I V GGT+++ + +A+ G G+ Y+ GF D + + GMSKE+ E++V++A++LA+ RD SG V ++N +G T+ +L
Sbjct: 5 VDFSAPHSIGTTIIGVTYKDGVVLGADSRT-STGVYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLL------------SYNNKN--FLETGLIVGGWDKYEGGQIFGVPLGGTIVQ-QPFAIGGSGSSYLYGFFDQAWKE-----------GMSKEEAEDLVKKAVSLAIARDGASGGVVRTVIINSEGVTRNFYPGDQL 208
BLAST of EWM21352.1 vs. NCBI_GenBank
Match: gi|950965127|ref|XP_014498769.1| (PREDICTED: proteasome subunit beta type-6 [Vigna radiata var. radiata] >gi|1044567108|ref|XP_017419886.1| PREDICTED: proteasome subunit beta type-6 isoform X1 [Vigna angularis] >gi|920698656|gb|KOM41881.1| hypothetical protein LR48_Vigan04g207900 [Vigna angularis] >gi|965662564|dbj|BAT78273.1| hypothetical protein VIGAN_02093100 [Vigna angularis var. angularis]) HSP 1 Score: 120.168 bits (300), Expect = 9.518e-29 Identity = 77/231 (33.33%), Postives = 125/231 (54.11%), Query Frame = 0
Query: 75 VDFLGGLSTGTTMVAAKYKDGVVVGADSRSVKNGRYVADRFTDKVQQVSEYVVLVCSGRTAVVQRLNQEIAARLRFYQIQHQRLPTSRHAAAVLRILMRMGLEPVEEKQQRNDKTQVTMDTDALAAGWSPREGPRIHQVLTGGTVLEARDYAVAGHGADYIVGFMDAHYPQVEEAGKALAHAGMSKEDCEEIVRRAMALAVGRDTQSGEGVTIAVVNPQGTTKRVLSTAEL 305
VDF S GTT++ YKDGVV+GADSR+ G YVA+R +DK+ Q+++ V + SG A Q ++ + L + IQ + T + AA ++R+L N+K ++T + GW EG +I V GGT+++ + +A+ G G+ Y+ GF D + + GMSKE+ E++V++A++LA+ RD SG V ++N +G T+ +L
Sbjct: 5 VDFSAPHSMGTTIIGVTYKDGVVLGADSRT-STGVYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLL------------SYNNKN--FLETGLIVGGWDKYEGGQIFGVPLGGTIVQ-QPFAIGGSGSSYLYGFFDQAWKE-----------GMSKEEAEDLVKKAVSLAIARDGASGGVVRTVIINSEGVTRNFYPGDQL 208 The following BLAST results are available for this feature:
BLAST of EWM21352.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|