EWM21361.1, cds9312 (CDS) Nannochloropsis gaditana

Overview
NameEWM21361.1
Unique Namecds9312
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:9608..11038 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21361.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100666g2.10298.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:9608..11038 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM21361.1 vs. NCBI_GenBank
Match: gi|585101548|gb|EWM21361.1| (hypothetical protein Naga_100666g2 [Nannochloropsis gaditana])

HSP 1 Score: 959.903 bits (2480), Expect = 0.000e+0
Identity = 476/476 (100.00%), Postives = 476/476 (100.00%), Query Frame = 0
Query:    1 MCFYKVRREFGSEGIDRRRVIECMRIWQHLSILVGGDVTWGMADKVGRSMGISAVDVEDNASVALGPTRSRRKGRAQEEVAILVRLVDEVRTMPDYKILARTQHESVPTFLGLLAGERLVQVTNAAFDRMVEGAGRIMSSAFVHRTTCILLLAQLVAPDDRSTFFEGFIQALFVPSRCFKSTFLLKWFQGDGDIRLCIVSFRPVKVGHLSGVQILFEAAPQSKRLTSRPHRNQVIDTFRRHDTPSPGPSPSAASSSSSISLHSESGARPRPKPRVPSEPGLENRRFGCSPDAWWQLSVPGDPASMPNTSAARRSLEIEREGGEGRAGRGSFCIPALACLPEPCPPRSEAAVRPEGGTKVGKGDETLLPRPLGRGVPVLIPTKEGGGQAEGEGGQARASEGFAEGKMKEGRHDSSAMSTSSTTSLGDVCDGGAEASAGFLGVPDPLADEAEDNLLDAALASAIGPTLTPELLNEVFD 476
            MCFYKVRREFGSEGIDRRRVIECMRIWQHLSILVGGDVTWGMADKVGRSMGISAVDVEDNASVALGPTRSRRKGRAQEEVAILVRLVDEVRTMPDYKILARTQHESVPTFLGLLAGERLVQVTNAAFDRMVEGAGRIMSSAFVHRTTCILLLAQLVAPDDRSTFFEGFIQALFVPSRCFKSTFLLKWFQGDGDIRLCIVSFRPVKVGHLSGVQILFEAAPQSKRLTSRPHRNQVIDTFRRHDTPSPGPSPSAASSSSSISLHSESGARPRPKPRVPSEPGLENRRFGCSPDAWWQLSVPGDPASMPNTSAARRSLEIEREGGEGRAGRGSFCIPALACLPEPCPPRSEAAVRPEGGTKVGKGDETLLPRPLGRGVPVLIPTKEGGGQAEGEGGQARASEGFAEGKMKEGRHDSSAMSTSSTTSLGDVCDGGAEASAGFLGVPDPLADEAEDNLLDAALASAIGPTLTPELLNEVFD
Sbjct:    1 MCFYKVRREFGSEGIDRRRVIECMRIWQHLSILVGGDVTWGMADKVGRSMGISAVDVEDNASVALGPTRSRRKGRAQEEVAILVRLVDEVRTMPDYKILARTQHESVPTFLGLLAGERLVQVTNAAFDRMVEGAGRIMSSAFVHRTTCILLLAQLVAPDDRSTFFEGFIQALFVPSRCFKSTFLLKWFQGDGDIRLCIVSFRPVKVGHLSGVQILFEAAPQSKRLTSRPHRNQVIDTFRRHDTPSPGPSPSAASSSSSISLHSESGARPRPKPRVPSEPGLENRRFGCSPDAWWQLSVPGDPASMPNTSAARRSLEIEREGGEGRAGRGSFCIPALACLPEPCPPRSEAAVRPEGGTKVGKGDETLLPRPLGRGVPVLIPTKEGGGQAEGEGGQARASEGFAEGKMKEGRHDSSAMSTSSTTSLGDVCDGGAEASAGFLGVPDPLADEAEDNLLDAALASAIGPTLTPELLNEVFD 476          
BLAST of EWM21361.1 vs. NCBI_GenBank
Match: gi|553177761|ref|XP_005852496.1| (hypothetical protein NGA_0710100 [Nannochloropsis gaditana CCMP526] >gi|422296036|gb|EKU23335.1| hypothetical protein NGA_0710100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 261.536 bits (667), Expect = 2.372e-81
Identity = 126/129 (97.67%), Postives = 127/129 (98.45%), Query Frame = 0
Query:    1 MCFYKVRREFGSEGIDRRRVIECMRIWQHLSILVGGDVTWGMADKVGRSMGISAVDVEDNASVALGPTRSRRKGRAQEEVAILVRLVDEVRTMPDYKILARTQHESVPTFLGLLAGERLVQVTNAAFDR 129
            MCFYKVRREFGSEGIDRRRVIECMRIWQHLS+LVGGDVTWGMADKVGRSMGISAVDVED ASVALGPTRSRRKGRAQEEVAILVRLVDEVRTMPDYKILARTQ ESVPTFLGLLAGERLVQVTNAAFDR
Sbjct:  115 MCFYKVRREFGSEGIDRRRVIECMRIWQHLSVLVGGDVTWGMADKVGRSMGISAVDVEDTASVALGPTRSRRKGRAQEEVAILVRLVDEVRTMPDYKILARTQDESVPTFLGLLAGERLVQVTNAAFDR 243          
BLAST of EWM21361.1 vs. NCBI_GenBank
Match: gi|585100534|gb|EWM20703.1| (hypothetical protein Naga_101787g1 [Nannochloropsis gaditana])

HSP 1 Score: 75.8702 bits (185), Expect = 4.602e-12
Identity = 60/222 (27.03%), Postives = 96/222 (43.24%), Query Frame = 0
Query:    3 FYKVRREFGSEGIDRRRVIECMRIWQHLSILVGGDVTWGMADKVGRSMGISAVDVEDNASVALGPTRSR---------------RKGRAQEEVAILVRLVDEVR-TMPDYKILARTQHESVPTFLGLLAG-ERLVQVTNAAFDRMVEGAGRIMSSAFVHRTTCILLLAQLVAPDDRSTFFEGFIQALFVPSRCFKSTFLLKWFQGDGDIRLCIVSFRPVKVG 207
            F +V RE     +DR +VI+ + IWQ++SI+   DV+ G+   +   + + + D+            SR               R  RA+E       L + V   M D  +        VP  +  + G   L+Q TN  +D++V GA  +       +T   LL+A L++PDDRS +F     +LF   R      L+K F   G +RL +     V++G
Sbjct:    9 FTRVHRE---GDLDRAKVIQMLNIWQNMSIIAAADVSCGLTRAIAELLHLPSTDLALLPPFLPPFLASRAFQTQRAALILHARERAARAKEGKGSQSLLKESVAWMMADDGV--------VPLLMMCMDGPHMLLQTTNRPYDKLVAGAQSLHEHCLRKKTIQFLLMASLISPDDRSLWFRCLAHSLFTSERYRHVAVLVKLFDAQGQMRLYLHEASQVQLG 219          
BLAST of EWM21361.1 vs. NCBI_GenBank
Match: gi|553188281|ref|XP_005854767.1| (hypothetical protein NGA_0115602 [Nannochloropsis gaditana CCMP526] >gi|553191620|ref|XP_005855415.1| hypothetical protein NGA_0115601 [Nannochloropsis gaditana CCMP526] >gi|422293646|gb|EKU20946.1| hypothetical protein NGA_0115601 [Nannochloropsis gaditana CCMP526] >gi|422294294|gb|EKU21594.1| hypothetical protein NGA_0115602 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 73.1738 bits (178), Expect = 1.587e-10
Identity = 52/226 (23.01%), Postives = 100/226 (44.25%), Query Frame = 0
Query:    1 MCFYKVRREFGSEGIDRRRVIECMRIWQHLSILVGGDVTWGMADKVGRSMGISAVDVEDNASVALGP---TRSRRKGRAQEEVAILVRLVDEVRTMPDYKILAR----TQHESVPTFLGLLAGERLVQVTNAAFDRMVEGAGRIMSSAFVHRTTCILLLAQLVAPDDRSTFFEGFIQALFVPSRCFKSTFLLKWFQGDGDIRLCIVSFRPVKVG-HLSGVQILFEA 218
            M      R F +  I R   +  +++W+ LS L G DVT G+A  V +   +SA+++E+   +   P    R +R  + Q   A   R     + + + +I  R    T+       + +     +    N      ++ A  +   A   +     L+A L AP+DR T+ +  ++ +F   +  K+ F  K +  DG ++LC+ + R +++G H +G+    E+
Sbjct:  107 MYLQAFERLFIAGKIRRDSALRTLKMWEFLSSLAGADVTLGVASHVQKRFNVSAIELEEPMRMLQDPPSHVRYQRLQQYQSSAASQAR----TQQLKETEIFKRENEGTRASRASLLMFVTNRSTMWAACNEFHAARLKEATELWDKALQRKLIWSYLMAPLYAPEDRRTYIDNIVEMIFGHEKLTKTMF-FKMYDKDGSVKLCLHTARTIRLGPHTTGITFKIES 327          
BLAST of EWM21361.1 vs. NCBI_GenBank
Match: gi|585113361|gb|EWM30665.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 73.559 bits (179), Expect = 2.841e-10
Identity = 58/214 (27.10%), Postives = 101/214 (47.20%), Query Frame = 0
Query:   24 MRIWQHLSILVGGDVTWGMADKVGRSMGISAVDVEDNASVALGPTRSRRKGRAQEEVAILVRLVDEVRTMPDYKIL------ARTQHESVPTFLGLLAGERLVQVTNAAFDRMVEGAGRIMSSAFVHRTT-CILLLAQLVAPDDRSTFFEGFIQAL----FVPSRCFKSTFLLKWFQGDGDIRLCIVSFRPVKVGHLSGVQILFEAAPQSKRLT 226
            +R W   S +VG D +WGMA +V   +  S +D ED   + L    S  + ++++    +   + +++  P +K L      +   H +  T  GL+     ++VTN AFD    GA R+ +   + +T  CIL L  LV+P+DR  +    I+A+       +  ++ T + K    +G+I+L +V  R +       V I  E  P+S  +T
Sbjct:  204 IRTWWLHSTVVGADTSWGMAREVALLLNFSPIDFEDTERLHLDYPLSVMRKQSEKFRDFVANGMLQIQQHPAFKALLAEVPPSTAIHLTCNTPNGLM-----LEVTNDAFDTYFRGADRMYNDIVLRKTMPCILYLG-LVSPEDRREWTRFMIEAVSKGPLNANGEWRKTQIFKLVCTEGNIQLFLVKARFLPSVGTGSVAITLEPCPRSNHVT 411          
BLAST of EWM21361.1 vs. NCBI_GenBank
Match: gi|585100606|gb|EWM20744.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 66.6254 bits (161), Expect = 4.189e-8
Identity = 60/255 (23.53%), Postives = 111/255 (43.53%), Query Frame = 0
Query:    3 FYKVRREFGSEGI-DRRRVIECMRIWQHLSILVGGDV--TWGMADKVGRSMGISAVDVEDNASVALGPTRSRRKGRAQEEVAILVRLVDEVRTMPDYKILARTQHESVPTFLGLLAGERLVQVTNAAFDRMVEGAGRIMSSAFVHRTTCILLLAQLVAPDDRSTFFEGFIQALFVPSRCFKSTFLLKWFQGDGDIRLCIVSFRPVKVG-HLSGVQILFEAAPQSKRLTSRPHRNQVIDTFRRHDTPSPGPSPSAA 253
            + +  ++   EG+ +R+R I  ++ W  L +++ GD   T+G   +V  +  I+ +++ED   +A  P     KGR     A  V L +  + + +  +  +  + S   ++  +  +    ++N A +         M   +  R     L A  VAP+DR  +F+  +    + +   K T  LK F   G + L +   + VK+G +      + E AP S+ +T+RP      D  R   T  P  S SA+
Sbjct:  189 YLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELEDPECLAYEPPLHAEKGRLWAARADRV-LGEGAKHLEENLVCRQANNSSRAVYMARMDCKDQWVISNKAHNTYFRSPAEFMQDMWKRRCLLAFLFAAGVAPEDRLAYFK-LLHFATLSTSLMKRTAFLKIFDRQGRMTLYLSDHQVVKMGPNEYASLCVTEPAPPSRHVTTRP------DVTRLRSTHHPCNSSSAS 435          
The following BLAST results are available for this feature:
BLAST of EWM21361.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585101548|gb|EWM21361.1|0.000e+0100.00hypothetical protein Naga_100666g2 [Nannochloropsi... [more]
gi|553177761|ref|XP_005852496.1|2.372e-8197.67hypothetical protein NGA_0710100 [Nannochloropsis ... [more]
gi|585100534|gb|EWM20703.1|4.602e-1227.03hypothetical protein Naga_101787g1 [Nannochloropsi... [more]
gi|553188281|ref|XP_005854767.1|1.587e-1023.01hypothetical protein NGA_0115602 [Nannochloropsis ... [more]
gi|585113361|gb|EWM30665.1|2.841e-1027.10Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
gi|585100606|gb|EWM20744.1|4.189e-823.53Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9342rna9342Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications