EWM21361.1, cds9312 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM21361.1 vs. NCBI_GenBank
Match: gi|585101548|gb|EWM21361.1| (hypothetical protein Naga_100666g2 [Nannochloropsis gaditana]) HSP 1 Score: 959.903 bits (2480), Expect = 0.000e+0 Identity = 476/476 (100.00%), Postives = 476/476 (100.00%), Query Frame = 0
Query: 1 MCFYKVRREFGSEGIDRRRVIECMRIWQHLSILVGGDVTWGMADKVGRSMGISAVDVEDNASVALGPTRSRRKGRAQEEVAILVRLVDEVRTMPDYKILARTQHESVPTFLGLLAGERLVQVTNAAFDRMVEGAGRIMSSAFVHRTTCILLLAQLVAPDDRSTFFEGFIQALFVPSRCFKSTFLLKWFQGDGDIRLCIVSFRPVKVGHLSGVQILFEAAPQSKRLTSRPHRNQVIDTFRRHDTPSPGPSPSAASSSSSISLHSESGARPRPKPRVPSEPGLENRRFGCSPDAWWQLSVPGDPASMPNTSAARRSLEIEREGGEGRAGRGSFCIPALACLPEPCPPRSEAAVRPEGGTKVGKGDETLLPRPLGRGVPVLIPTKEGGGQAEGEGGQARASEGFAEGKMKEGRHDSSAMSTSSTTSLGDVCDGGAEASAGFLGVPDPLADEAEDNLLDAALASAIGPTLTPELLNEVFD 476
MCFYKVRREFGSEGIDRRRVIECMRIWQHLSILVGGDVTWGMADKVGRSMGISAVDVEDNASVALGPTRSRRKGRAQEEVAILVRLVDEVRTMPDYKILARTQHESVPTFLGLLAGERLVQVTNAAFDRMVEGAGRIMSSAFVHRTTCILLLAQLVAPDDRSTFFEGFIQALFVPSRCFKSTFLLKWFQGDGDIRLCIVSFRPVKVGHLSGVQILFEAAPQSKRLTSRPHRNQVIDTFRRHDTPSPGPSPSAASSSSSISLHSESGARPRPKPRVPSEPGLENRRFGCSPDAWWQLSVPGDPASMPNTSAARRSLEIEREGGEGRAGRGSFCIPALACLPEPCPPRSEAAVRPEGGTKVGKGDETLLPRPLGRGVPVLIPTKEGGGQAEGEGGQARASEGFAEGKMKEGRHDSSAMSTSSTTSLGDVCDGGAEASAGFLGVPDPLADEAEDNLLDAALASAIGPTLTPELLNEVFD
Sbjct: 1 MCFYKVRREFGSEGIDRRRVIECMRIWQHLSILVGGDVTWGMADKVGRSMGISAVDVEDNASVALGPTRSRRKGRAQEEVAILVRLVDEVRTMPDYKILARTQHESVPTFLGLLAGERLVQVTNAAFDRMVEGAGRIMSSAFVHRTTCILLLAQLVAPDDRSTFFEGFIQALFVPSRCFKSTFLLKWFQGDGDIRLCIVSFRPVKVGHLSGVQILFEAAPQSKRLTSRPHRNQVIDTFRRHDTPSPGPSPSAASSSSSISLHSESGARPRPKPRVPSEPGLENRRFGCSPDAWWQLSVPGDPASMPNTSAARRSLEIEREGGEGRAGRGSFCIPALACLPEPCPPRSEAAVRPEGGTKVGKGDETLLPRPLGRGVPVLIPTKEGGGQAEGEGGQARASEGFAEGKMKEGRHDSSAMSTSSTTSLGDVCDGGAEASAGFLGVPDPLADEAEDNLLDAALASAIGPTLTPELLNEVFD 476
BLAST of EWM21361.1 vs. NCBI_GenBank
Match: gi|553177761|ref|XP_005852496.1| (hypothetical protein NGA_0710100 [Nannochloropsis gaditana CCMP526] >gi|422296036|gb|EKU23335.1| hypothetical protein NGA_0710100 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 261.536 bits (667), Expect = 2.372e-81 Identity = 126/129 (97.67%), Postives = 127/129 (98.45%), Query Frame = 0
Query: 1 MCFYKVRREFGSEGIDRRRVIECMRIWQHLSILVGGDVTWGMADKVGRSMGISAVDVEDNASVALGPTRSRRKGRAQEEVAILVRLVDEVRTMPDYKILARTQHESVPTFLGLLAGERLVQVTNAAFDR 129
MCFYKVRREFGSEGIDRRRVIECMRIWQHLS+LVGGDVTWGMADKVGRSMGISAVDVED ASVALGPTRSRRKGRAQEEVAILVRLVDEVRTMPDYKILARTQ ESVPTFLGLLAGERLVQVTNAAFDR
Sbjct: 115 MCFYKVRREFGSEGIDRRRVIECMRIWQHLSVLVGGDVTWGMADKVGRSMGISAVDVEDTASVALGPTRSRRKGRAQEEVAILVRLVDEVRTMPDYKILARTQDESVPTFLGLLAGERLVQVTNAAFDR 243
BLAST of EWM21361.1 vs. NCBI_GenBank
Match: gi|585100534|gb|EWM20703.1| (hypothetical protein Naga_101787g1 [Nannochloropsis gaditana]) HSP 1 Score: 75.8702 bits (185), Expect = 4.602e-12 Identity = 60/222 (27.03%), Postives = 96/222 (43.24%), Query Frame = 0
Query: 3 FYKVRREFGSEGIDRRRVIECMRIWQHLSILVGGDVTWGMADKVGRSMGISAVDVEDNASVALGPTRSR---------------RKGRAQEEVAILVRLVDEVR-TMPDYKILARTQHESVPTFLGLLAG-ERLVQVTNAAFDRMVEGAGRIMSSAFVHRTTCILLLAQLVAPDDRSTFFEGFIQALFVPSRCFKSTFLLKWFQGDGDIRLCIVSFRPVKVG 207
F +V RE +DR +VI+ + IWQ++SI+ DV+ G+ + + + + D+ SR R RA+E L + V M D + VP + + G L+Q TN +D++V GA + +T LL+A L++PDDRS +F +LF R L+K F G +RL + V++G
Sbjct: 9 FTRVHRE---GDLDRAKVIQMLNIWQNMSIIAAADVSCGLTRAIAELLHLPSTDLALLPPFLPPFLASRAFQTQRAALILHARERAARAKEGKGSQSLLKESVAWMMADDGV--------VPLLMMCMDGPHMLLQTTNRPYDKLVAGAQSLHEHCLRKKTIQFLLMASLISPDDRSLWFRCLAHSLFTSERYRHVAVLVKLFDAQGQMRLYLHEASQVQLG 219
BLAST of EWM21361.1 vs. NCBI_GenBank
Match: gi|553188281|ref|XP_005854767.1| (hypothetical protein NGA_0115602 [Nannochloropsis gaditana CCMP526] >gi|553191620|ref|XP_005855415.1| hypothetical protein NGA_0115601 [Nannochloropsis gaditana CCMP526] >gi|422293646|gb|EKU20946.1| hypothetical protein NGA_0115601 [Nannochloropsis gaditana CCMP526] >gi|422294294|gb|EKU21594.1| hypothetical protein NGA_0115602 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 73.1738 bits (178), Expect = 1.587e-10 Identity = 52/226 (23.01%), Postives = 100/226 (44.25%), Query Frame = 0
Query: 1 MCFYKVRREFGSEGIDRRRVIECMRIWQHLSILVGGDVTWGMADKVGRSMGISAVDVEDNASVALGP---TRSRRKGRAQEEVAILVRLVDEVRTMPDYKILAR----TQHESVPTFLGLLAGERLVQVTNAAFDRMVEGAGRIMSSAFVHRTTCILLLAQLVAPDDRSTFFEGFIQALFVPSRCFKSTFLLKWFQGDGDIRLCIVSFRPVKVG-HLSGVQILFEA 218
M R F + I R + +++W+ LS L G DVT G+A V + +SA+++E+ + P R +R + Q A R + + + +I R T+ + + + N ++ A + A + L+A L AP+DR T+ + ++ +F + K+ F K + DG ++LC+ + R +++G H +G+ E+
Sbjct: 107 MYLQAFERLFIAGKIRRDSALRTLKMWEFLSSLAGADVTLGVASHVQKRFNVSAIELEEPMRMLQDPPSHVRYQRLQQYQSSAASQAR----TQQLKETEIFKRENEGTRASRASLLMFVTNRSTMWAACNEFHAARLKEATELWDKALQRKLIWSYLMAPLYAPEDRRTYIDNIVEMIFGHEKLTKTMF-FKMYDKDGSVKLCLHTARTIRLGPHTTGITFKIES 327
BLAST of EWM21361.1 vs. NCBI_GenBank
Match: gi|585113361|gb|EWM30665.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana]) HSP 1 Score: 73.559 bits (179), Expect = 2.841e-10 Identity = 58/214 (27.10%), Postives = 101/214 (47.20%), Query Frame = 0
Query: 24 MRIWQHLSILVGGDVTWGMADKVGRSMGISAVDVEDNASVALGPTRSRRKGRAQEEVAILVRLVDEVRTMPDYKIL------ARTQHESVPTFLGLLAGERLVQVTNAAFDRMVEGAGRIMSSAFVHRTT-CILLLAQLVAPDDRSTFFEGFIQAL----FVPSRCFKSTFLLKWFQGDGDIRLCIVSFRPVKVGHLSGVQILFEAAPQSKRLT 226
+R W S +VG D +WGMA +V + S +D ED + L S + ++++ + + +++ P +K L + H + T GL+ ++VTN AFD GA R+ + + +T CIL L LV+P+DR + I+A+ + ++ T + K +G+I+L +V R + V I E P+S +T
Sbjct: 204 IRTWWLHSTVVGADTSWGMAREVALLLNFSPIDFEDTERLHLDYPLSVMRKQSEKFRDFVANGMLQIQQHPAFKALLAEVPPSTAIHLTCNTPNGLM-----LEVTNDAFDTYFRGADRMYNDIVLRKTMPCILYLG-LVSPEDRREWTRFMIEAVSKGPLNANGEWRKTQIFKLVCTEGNIQLFLVKARFLPSVGTGSVAITLEPCPRSNHVT 411
BLAST of EWM21361.1 vs. NCBI_GenBank
Match: gi|585100606|gb|EWM20744.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana]) HSP 1 Score: 66.6254 bits (161), Expect = 4.189e-8 Identity = 60/255 (23.53%), Postives = 111/255 (43.53%), Query Frame = 0
Query: 3 FYKVRREFGSEGI-DRRRVIECMRIWQHLSILVGGDV--TWGMADKVGRSMGISAVDVEDNASVALGPTRSRRKGRAQEEVAILVRLVDEVRTMPDYKILARTQHESVPTFLGLLAGERLVQVTNAAFDRMVEGAGRIMSSAFVHRTTCILLLAQLVAPDDRSTFFEGFIQALFVPSRCFKSTFLLKWFQGDGDIRLCIVSFRPVKVG-HLSGVQILFEAAPQSKRLTSRPHRNQVIDTFRRHDTPSPGPSPSAA 253
+ + ++ EG+ +R+R I ++ W L +++ GD T+G +V + I+ +++ED +A P KGR A V L + + + + + + + S ++ + + ++N A + M + R L A VAP+DR +F+ + + + K T LK F G + L + + VK+G + + E AP S+ +T+RP D R T P S SA+
Sbjct: 189 YLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELEDPECLAYEPPLHAEKGRLWAARADRV-LGEGAKHLEENLVCRQANNSSRAVYMARMDCKDQWVISNKAHNTYFRSPAEFMQDMWKRRCLLAFLFAAGVAPEDRLAYFK-LLHFATLSTSLMKRTAFLKIFDRQGRMTLYLSDHQVVKMGPNEYASLCVTEPAPPSRHVTTRP------DVTRLRSTHHPCNSSSAS 435 The following BLAST results are available for this feature:
BLAST of EWM21361.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|