EWM21379.1, cds9295 (CDS) Nannochloropsis gaditana

Overview
NameEWM21379.1
Unique Namecds9295
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:392954..394324 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21379.1
Productmethylosome protein
Orig transcript idgnl|cribi|Naga_100424g2.4521.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:392954..394324 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR019775WD40_repeat_CS
IPR015943WD40/YVTN_repeat-like_dom
IPR001680WD40_repeat
Homology
BLAST of EWM21379.1 vs. NCBI_GenBank
Match: gi|585101593|gb|EWM21379.1| (methylosome protein [Nannochloropsis gaditana])

HSP 1 Score: 914.835 bits (2363), Expect = 0.000e+0
Identity = 456/456 (100.00%), Postives = 456/456 (100.00%), Query Frame = 0
Query:    1 MQTVQICDLCVHDDLVAVASSRLEGKTWNGALTLYLATPSSTTTADTPPSPPPLTLTRMHVQSTTYGIPALAWCGATQAACNGSSPHEPHLLAAGQDNGDVVVYKVGRKGGENLHSSDIEVEETVTLVPLTTLTDHDDIVSAVAAGREEGGDGKLATGGWDCLVKVWRVGMDIVQPMSSWQAHRDHVTDLAWRGREGGREGGGGGRELASAGRDRSVKLWDTRMEGESLRLVDAHPQIPLALAWGGNASSLPSSSSPPTTLPPGPSPPPGLEGVAEGPLEKLTLISNLNLKWGAGEGEWALCVGFDDGSVEVLDLRLLPREAKCRGRGGRRRGVERSNEASILPSQRYRMHQTRTNALAPASCGPGASSEFLLASGGDDGVVTGMRVKAGQEGENQKLASPPSCGRHADYVRALSWLDLSGKGGGHEKVHPPCIPSQVLLSGGWDGHVRAWTWVDE 456
            MQTVQICDLCVHDDLVAVASSRLEGKTWNGALTLYLATPSSTTTADTPPSPPPLTLTRMHVQSTTYGIPALAWCGATQAACNGSSPHEPHLLAAGQDNGDVVVYKVGRKGGENLHSSDIEVEETVTLVPLTTLTDHDDIVSAVAAGREEGGDGKLATGGWDCLVKVWRVGMDIVQPMSSWQAHRDHVTDLAWRGREGGREGGGGGRELASAGRDRSVKLWDTRMEGESLRLVDAHPQIPLALAWGGNASSLPSSSSPPTTLPPGPSPPPGLEGVAEGPLEKLTLISNLNLKWGAGEGEWALCVGFDDGSVEVLDLRLLPREAKCRGRGGRRRGVERSNEASILPSQRYRMHQTRTNALAPASCGPGASSEFLLASGGDDGVVTGMRVKAGQEGENQKLASPPSCGRHADYVRALSWLDLSGKGGGHEKVHPPCIPSQVLLSGGWDGHVRAWTWVDE
Sbjct:    1 MQTVQICDLCVHDDLVAVASSRLEGKTWNGALTLYLATPSSTTTADTPPSPPPLTLTRMHVQSTTYGIPALAWCGATQAACNGSSPHEPHLLAAGQDNGDVVVYKVGRKGGENLHSSDIEVEETVTLVPLTTLTDHDDIVSAVAAGREEGGDGKLATGGWDCLVKVWRVGMDIVQPMSSWQAHRDHVTDLAWRGREGGREGGGGGRELASAGRDRSVKLWDTRMEGESLRLVDAHPQIPLALAWGGNASSLPSSSSPPTTLPPGPSPPPGLEGVAEGPLEKLTLISNLNLKWGAGEGEWALCVGFDDGSVEVLDLRLLPREAKCRGRGGRRRGVERSNEASILPSQRYRMHQTRTNALAPASCGPGASSEFLLASGGDDGVVTGMRVKAGQEGENQKLASPPSCGRHADYVRALSWLDLSGKGGGHEKVHPPCIPSQVLLSGGWDGHVRAWTWVDE 456          
BLAST of EWM21379.1 vs. NCBI_GenBank
Match: gi|299469814|emb|CBN76668.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 92.8189 bits (229), Expect = 2.950e-17
Identity = 114/437 (26.09%), Postives = 166/437 (37.99%), Query Frame = 0
Query:   11 VHDDLVAVASSRLEGKTWNGALTLYLATPSSTTTADTPPSPPPLTLTRMHVQSTTYGIPALAWCGATQAACNGSSPHEP--HLLAAGQDNGDVVVYKVGRKGGENLHSSDIEVEETVTLVPLTTLTDHDDIVSAVAAGREEGGDGKLATGGWDCLVKVWRVGMDIVQPMSSWQAHRDHVTDLAWRGREGGREGGGGGRELASAGRDRSVKLWDTRMEGESLRLVDAHPQIPLALAWGGNASSLPSSSSPPTTLPPGPSPPPGLEGVAEGPLEKLTLISNLNLKWGAGEGEWALCVGFDDGSVEVLDLRLLPREAKCRGRGGRRRGVERSNEASILPSQRYRMHQTRTNALAPASCGPGASSEFLLASGGDDGVVTGMRVKAGQEGENQKLASPPSCGRHADYVRALSWLDLSGKGGGHEKVHPPCIPSQVLLSGGWD 445
            + DD++ VA+S L G TW+ +L +                   L  +   V ++             Q+ C      +P   +++AG DNGDV VYK             ++ E    LV +  L +HDDIVS+VAA R    DG + +GG+D  V VW +  D    + ++  H  +VT + W        G    +  AS+  D SV++WD R            PQ  LA  W G                                      +  L++ W    GE  L VG +DG+V VLD R L                     +S L +++    +    A  PA  G  +    LLAS GDDGV+   R+     G+N   ++      H DY +ALSW D +                  L+SGGWD
Sbjct:   19 ISDDMILVATSNLGGNTWDSSLQV-------------------LDFSTKEVVASV----------KQQSGCADVCWVKPGRRVVSAG-DNGDVKVYK-------------MDEEAPARLVEVANLEEHDDIVSSVAASRSR--DGLVLSGGYDRSVNVWDIDSDRDTSLDTFTGHSGYVTGVEWSA------GQDDSQVFASSSTDCSVRVWDRR-----------QPQGCLACHWFG--------------------------------------VPALSISWDHCSGE-LLAVGCEDGTVAVLDRRTL---------------------SSPLFTEQSHTGRVNQTAFGPAPSGGDSEVSGLLASVGDDGVLAVQRL-----GDN---SNHSRSALHTDYAQALSWRDENN-----------------LVSGGWD 308          
BLAST of EWM21379.1 vs. NCBI_GenBank
Match: gi|953498582|emb|CEG40220.1| (Polyadenylation factor I complex, subunit PFS2 [Plasmopara halstedii])

HSP 1 Score: 67.3958 bits (163), Expect = 1.166e-8
Identity = 70/253 (27.67%), Postives = 113/253 (44.66%), Query Frame = 0
Query:   11 VHDDLVAVASSRLEGKTWNGALTLYLATPSSTTTADTPPSPPPLTLTRMHVQSTTYGIPALAWCGATQAACNGSSPHEPHLLAAGQDNGDVVVYKVGRKGGENLHSSDIEVEETVTLVPLT-------TLTD--HDDIVSAVAAGREEGGDGKLATGGWDCLVKVWRVGMDIVQPMSSWQAHRDHVTDLAWRGREGGREGGGGGRELASAGRDRSVKLWDTRM-EGESLRL--------VDAHPQIPLALAWG 245
            VH ++     S+LEG  W+G +TL  A  S               L  + +++   G+ ALAWC +           + ++LA G D+GDV + K             +  +E +   PL+       T+TD  HDD+++ V++   E     LAT  WD  VK+W V + + Q ++++  H    TDL W    G          L SA +D +V++WD R  +G +L +        VD HP+ P+  + G
Sbjct:   12 VHFNMRRRRCSQLEGNVWSGGVTLLDAQTSE-------------QLCELQLET---GVAALAWCSS-----------DGNVLALGCDDGDVRLAK-------------LSADEALIFKPLSGSNDDKDTVTDWGHDDVITDVSSSITEK--THLATCSWDLTVKLWDVTV-MDQTIATFHGH----TDLIW----GVAMNPTHKHVLCSASQDSTVQVWDARQSQGAALSILTLSPALSVDWHPRQPVIFSVG 213          
BLAST of EWM21379.1 vs. NCBI_GenBank
Match: gi|570979530|gb|ETP40454.1| (hypothetical protein F442_12215 [Phytophthora parasitica P10297])

HSP 1 Score: 66.2402 bits (160), Expect = 3.535e-8
Identity = 73/251 (29.08%), Postives = 112/251 (44.62%), Query Frame = 0
Query:   15 LVAVASSRLEGKTWNGALTLYLATPSSTTTADTPPSPPPLTLTRMHVQSTTYGIPALAWCGATQAACNGSSPHEPHLLAAGQDNGDVVVYKVGRKGGENLHSSDIEVEETVTLVPLTTLTD----------HDDIVSAVAAGREEGGDGKLATGGWDCLVKVWRVG-MDIVQPMSSWQAHRDHVTDLAWRGREGGREGGGGGRELASAGRDRSVKLWDTRM-EGESLRL--------VDAHPQIPLALAWG 245
            L+AVA S+LEG  W+G + L  A  +               L  + +++   G+ +LAWC             E  +LA G D+GDV + K+         S+D+    T   VPLTT +           HDD+V+ V+A   +    +LAT  WD  VK+W VG MD  + ++++  H    +DL W    G          L SA +D +V++WD R  +  +L +        VD HP+ P   + G
Sbjct:   41 LLAVAQSQLEGNVWSGGVALLDAVSNE-------------RLCELQLET---GVSSLAWCST-----------EGDVLALGCDDGDVRLAKL---------STDV----TFAFVPLTTGSSDDEDAVSGWGHDDVVTGVSASPVDK--TQLATCSWDLTVKLWDVGAMD--KTVATFDGH----SDLIW----GVAMNPTHAHILCSASQDSTVQVWDARRPQSAALSVSTLLPALSVDWHPKQPTVFSVG 239          
BLAST of EWM21379.1 vs. NCBI_GenBank
Match: gi|568015079|gb|ETL89256.1| (hypothetical protein L917_11790 [Phytophthora parasitica])

HSP 1 Score: 65.855 bits (159), Expect = 4.838e-8
Identity = 73/251 (29.08%), Postives = 111/251 (44.22%), Query Frame = 0
Query:   15 LVAVASSRLEGKTWNGALTLYLATPSSTTTADTPPSPPPLTLTRMHVQSTTYGIPALAWCGATQAACNGSSPHEPHLLAAGQDNGDVVVYKVGRKGGENLHSSDIEVEETVTLVPLTTLTD----------HDDIVSAVAAGREEGGDGKLATGGWDCLVKVWRVG-MDIVQPMSSWQAHRDHVTDLAWRGREGGREGGGGGRELASAGRDRSVKLWDTRM-EGESLRL--------VDAHPQIPLALAWG 245
            L+AVA S+LEG  W+G + L  A  +               L  + +++   G+ +LAWC             E  +LA G D+GDV + K+         S+D+    T   VPLTT +           HDD+V+ V+A   +    +LAT  WD  VK+W VG MD  + ++++  H    +DL W    G          L SA +D +V++WD R  +  +L +        VD HP+ P     G
Sbjct:   41 LLAVAQSQLEGNVWSGGVALLDAVSNE-------------RLCELQLET---GVSSLAWCST-----------EGDVLALGCDDGDVRLAKL---------STDV----TFAFVPLTTGSSDDEDAVSGWGHDDVVTGVSASPVDK--TQLATCSWDLTVKLWDVGAMD--KTVATFDGH----SDLIW----GVAMNPTHAHILCSASQDSTVQVWDARRPQSAALSVSTLLPALSVDWHPKQPTVFTVG 239          
BLAST of EWM21379.1 vs. NCBI_GenBank
Match: gi|505011805|ref|WP_015198907.1| (WD40 repeat-containing protein [Calothrix parietina] >gi|428236489|gb|AFZ02279.1| WD40 repeat-containing protein [Calothrix sp. PCC 6303])

HSP 1 Score: 66.2402 bits (160), Expect = 7.401e-8
Identity = 48/143 (33.57%), Postives = 70/143 (48.95%), Query Frame = 0
Query:  116 SSD--IEVEETVTLVPLTTLTDHDDIVSAVAAGREEGGDGK-LATGGWDCLVKVWRVGMDIVQPMSSWQAHRDHVTDLAWRGREGGREGGGGGRELASAGRDRSVKLWDTRMEGESLRLVDAHPQIPLALAWGGNASSLPSSS 255
            SSD  I++ +  T  PL TLT H D V +VA       DGK LA+   D  +K+W   M   +P+ +   H D V  +AW            G+ LASA  D ++KLWD    G+ L+ ++ H      +AW  +  +L S+S
Sbjct: 1186 SSDTTIKLWDETTGKPLKTLTGHSDGVISVAWS----ADGKTLASASLDNTIKLWDATMG--KPLKTLAGHSDAVYGVAW---------SADGKTLASASWDNTIKLWDA-TTGKPLKTLNGHSDHVYGVAWSADGKTLASAS 1312          
BLAST of EWM21379.1 vs. NCBI_GenBank
Match: gi|566019723|gb|ETI42634.1| (hypothetical protein F443_12301 [Phytophthora parasitica P1569])

HSP 1 Score: 65.0846 bits (157), Expect = 9.473e-8
Identity = 72/251 (28.69%), Postives = 112/251 (44.62%), Query Frame = 0
Query:   15 LVAVASSRLEGKTWNGALTLYLATPSSTTTADTPPSPPPLTLTRMHVQSTTYGIPALAWCGATQAACNGSSPHEPHLLAAGQDNGDVVVYKVGRKGGENLHSSDIEVEETVTLVPLTTLTD----------HDDIVSAVAAGREEGGDGKLATGGWDCLVKVWRVG-MDIVQPMSSWQAHRDHVTDLAWRGREGGREGGGGGRELASAGRDRSVKLWDTRM-EGESLRL--------VDAHPQIPLALAWG 245
            L+AVA S+LEG  W+G + L  A  +               L  + +++   G+ +LAWC             E  +LA G D+GDV + K+         S+D+    T   VPL+T +           HDD+V+ V+A   +    +LAT  WD  VK+W VG MD  + ++++  H    +DL W    G          L SA +D +V++WD R  +  +L +        VD HP+ P   + G
Sbjct:   41 LLAVAQSQLEGNVWSGGVALLDAVSNE-------------RLCELQLET---GVSSLAWCST-----------EGDVLALGCDDGDVRLAKL---------STDV----TFAFVPLSTGSSDDEDAVSGWGHDDVVTGVSASPVDK--TQLATCSWDLTVKLWDVGAMD--KTVATFDGH----SDLIW----GVAMNPTHAHILCSASQDSTVQVWDARRPQSAALSVSTLLPALSVDWHPKQPTVFSVG 239          
BLAST of EWM21379.1 vs. NCBI_GenBank
Match: gi|568045337|gb|ETM42493.1| (hypothetical protein L914_11855 [Phytophthora parasitica])

HSP 1 Score: 64.6994 bits (156), Expect = 1.009e-7
Identity = 72/251 (28.69%), Postives = 112/251 (44.62%), Query Frame = 0
Query:   15 LVAVASSRLEGKTWNGALTLYLATPSSTTTADTPPSPPPLTLTRMHVQSTTYGIPALAWCGATQAACNGSSPHEPHLLAAGQDNGDVVVYKVGRKGGENLHSSDIEVEETVTLVPLTTLTD----------HDDIVSAVAAGREEGGDGKLATGGWDCLVKVWRVG-MDIVQPMSSWQAHRDHVTDLAWRGREGGREGGGGGRELASAGRDRSVKLWDTRM-EGESLRL--------VDAHPQIPLALAWG 245
            L+AVA S+LEG  W+G + L  A  +               L  + +++   G+ +LAWC             E  +LA G D+GDV + K+         S+D+    T   VPL+T +           HDD+V+ V+A   +    +LAT  WD  VK+W VG MD  + ++++  H    +DL W    G          L SA +D +V++WD R  +  +L +        VD HP+ P   + G
Sbjct:   41 LLAVAQSQLEGNVWSGGVALLDAVSNE-------------RLCELQLET---GVSSLAWCST-----------EGDVLALGCDDGDVRLAKL---------STDV----TFAFVPLSTGSSDDEDAVSGWGHDDVVTGVSASPVDK--TQLATCSWDLTVKLWDVGAMD--KTVATFDGH----SDLIW----GVAMNPTHAHILCSASQDSTVQVWDARRPQSAALSVSTLLPALSVDWHPKQPTVFSVG 239          
BLAST of EWM21379.1 vs. NCBI_GenBank
Match: gi|570323281|gb|ETO71229.1| (hypothetical protein F444_12399 [Phytophthora parasitica P1976])

HSP 1 Score: 64.3142 bits (155), Expect = 1.578e-7
Identity = 72/251 (28.69%), Postives = 111/251 (44.22%), Query Frame = 0
Query:   15 LVAVASSRLEGKTWNGALTLYLATPSSTTTADTPPSPPPLTLTRMHVQSTTYGIPALAWCGATQAACNGSSPHEPHLLAAGQDNGDVVVYKVGRKGGENLHSSDIEVEETVTLVPLTTLTD----------HDDIVSAVAAGREEGGDGKLATGGWDCLVKVWRVG-MDIVQPMSSWQAHRDHVTDLAWRGREGGREGGGGGRELASAGRDRSVKLWDTRM-EGESLRL--------VDAHPQIPLALAWG 245
            L+AVA S+LEG  W+G + L  A  +               L  + +++   G+ +LAWC             E  +LA G D+GDV + K+         S+D+    T   VPL+T +           HDD+V+ V+A   +    +LAT  WD  VK+W VG MD  + ++++  H    +DL W    G          L SA +D +V++WD R  +  +L +        VD HP+ P     G
Sbjct:   41 LLAVAQSQLEGNVWSGGVALLDAVSNE-------------RLCELQLET---GVSSLAWCST-----------EGDVLALGCDDGDVRLAKL---------STDV----TFAFVPLSTGSSDDEDAVSGWGHDDVVTGVSASPVDK--TQLATCSWDLTVKLWDVGAMD--KTVATFDGH----SDLIW----GVVMNPTHAHILCSASQDSTVQVWDARRPQSAALSVSTLLPALSVDWHPKQPTVFTVG 239          
BLAST of EWM21379.1 vs. NCBI_GenBank
Match: gi|301098870|ref|XP_002898527.1| (methylosome protein 50, putative [Phytophthora infestans T30-4] >gi|262104952|gb|EEY63004.1| methylosome protein 50, putative [Phytophthora infestans T30-4])

HSP 1 Score: 63.5438 bits (153), Expect = 1.962e-7
Identity = 67/220 (30.45%), Postives = 99/220 (45.00%), Query Frame = 0
Query:   15 LVAVASSRLEGKTWNGALTLYLATPSSTTTADTPPSPPPLTLTRMHVQSTTYGIPALAWCGATQAACNGSSPHEPHLLAAGQDNGDVVVYKVGRKGGENLHSSDIEVEETVTLVPLTT--LTD--------HDDIVSAVAAGREEGGDGKLATGGWDCLVKVWRVG-MDIVQPMSSWQAHRDHVTDLAWRGREGGREGGGGGRELASAGRDRSVKLWDTR 223
            L+AVA S+LEG  W+G + L  A  +               L  + +++   G+ +LAWC A           E  +LA G D+GDV + K+         S+D+    T   VPL T    D        HDD+V+ V+    E    +LAT  WD  VK+W +G MD  + ++++  H    TDL W    G          L SA +D +V++WD R
Sbjct:   41 LLAVAQSQLEGNVWSGGVALLDAASNE-------------RLCELQLET---GVASLAWCSA-----------EGDVLALGCDDGDVRLAKL---------STDV----TFAFVPLGTGGSIDEDAVCGWGHDDVVTGVSISSVE--KTQLATCSWDLTVKLWDIGAMD--KTVATFDGH----TDLIW----GVAMNPTHANLLCSASQDSTVQVWDAR 208          
The following BLAST results are available for this feature:
BLAST of EWM21379.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101593|gb|EWM21379.1|0.000e+0100.00methylosome protein [Nannochloropsis gaditana][more]
gi|299469814|emb|CBN76668.1|2.950e-1726.09conserved unknown protein [Ectocarpus siliculosus][more]
gi|953498582|emb|CEG40220.1|1.166e-827.67Polyadenylation factor I complex, subunit PFS2 [Pl... [more]
gi|570979530|gb|ETP40454.1|3.535e-829.08hypothetical protein F442_12215 [Phytophthora para... [more]
gi|568015079|gb|ETL89256.1|4.838e-829.08hypothetical protein L917_11790 [Phytophthora para... [more]
gi|505011805|ref|WP_015198907.1|7.401e-833.57WD40 repeat-containing protein [Calothrix parietin... [more]
gi|566019723|gb|ETI42634.1|9.473e-828.69hypothetical protein F443_12301 [Phytophthora para... [more]
gi|568045337|gb|ETM42493.1|1.009e-728.69hypothetical protein L914_11855 [Phytophthora para... [more]
gi|570323281|gb|ETO71229.1|1.578e-728.69hypothetical protein F444_12399 [Phytophthora para... [more]
gi|301098870|ref|XP_002898527.1|1.962e-730.45methylosome protein 50, putative [Phytophthora inf... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9325rna9325Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications