EWM21377.1, cds9292 (CDS) Nannochloropsis gaditana

Overview
NameEWM21377.1
Unique Namecds9292
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:383787..383804 +
Alignment locationKK037252.1:384427..384584 +
Alignment locationKK037252.1:384872..385058 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21377.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100424g5.4519.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:383787..383804 +
KK037252.1supercontigKK037252.1:384427..384584 +
KK037252.1supercontigKK037252.1:384872..385058 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM21377.1 vs. NCBI_GenBank
Match: gi|585101591|gb|EWM21377.1| (hypothetical protein Naga_100424g5 [Nannochloropsis gaditana])

HSP 1 Score: 242.662 bits (618), Expect = 3.484e-81
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
Query:    1 MDLPRGCLLGGNTSALHVQGHATRLLQGRSTKVFKRARLGDEALSFKRGVLKPNTWKPKLRYVKTDDELAWTLPAGGIVLGKSYKIKWRVHLGGGVASGTELPLTVSVAEWMEDLVVSVK 120
            MDLPRGCLLGGNTSALHVQGHATRLLQGRSTKVFKRARLGDEALSFKRGVLKPNTWKPKLRYVKTDDELAWTLPAGGIVLGKSYKIKWRVHLGGGVASGTELPLTVSVAEWMEDLVVSVK
Sbjct:    1 MDLPRGCLLGGNTSALHVQGHATRLLQGRSTKVFKRARLGDEALSFKRGVLKPNTWKPKLRYVKTDDELAWTLPAGGIVLGKSYKIKWRVHLGGGVASGTELPLTVSVAEWMEDLVVSVK 120          
BLAST of EWM21377.1 vs. NCBI_GenBank
Match: gi|553176372|ref|XP_005852373.1| (hypothetical protein NGA_0690000 [Nannochloropsis gaditana CCMP526] >gi|422296155|gb|EKU23454.1| hypothetical protein NGA_0690000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 196.438 bits (498), Expect = 6.461e-63
Identity = 92/119 (77.31%), Postives = 106/119 (89.08%), Query Frame = 0
Query:    2 DLPRGCLLGGNTSALHVQGHATRLLQGRSTKVFKRARLGDEALSFKRGVLKPNTWKPKLRYVKTDDELAWTLPAGGIVLGKSYKIKWRVHLGGGVASGTELPLTVSVAEWMEDLVVSVK 120
            D+   CLLGGNT+ LHVQG+ATRLLQG STKV KRARLGDEALSFKRG L+PNTW+PKLRY+KT++ELAWTLP GGIV GK+YKIKWR+H+G  VASGTELPLTV VA+WM+DLVV+ K
Sbjct:    3 DVVVSCLLGGNTTTLHVQGNATRLLQGHSTKVLKRARLGDEALSFKRGKLRPNTWRPKLRYIKTNNELAWTLPVGGIVFGKTYKIKWRIHMGRSVASGTELPLTVRVADWMKDLVVTAK 121          
BLAST of EWM21377.1 vs. NCBI_GenBank
Match: gi|553178404|ref|XP_005852549.1| (hypothetical protein NGA_0710700, partial [Nannochloropsis gaditana CCMP526] >gi|422295984|gb|EKU23283.1| hypothetical protein NGA_0710700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 189.504 bits (480), Expect = 2.177e-59
Identity = 93/119 (78.15%), Postives = 103/119 (86.55%), Query Frame = 0
Query:    2 DLPRGCLLGGNTSALHVQGHATRLLQGRSTKVFKRARLGDEALSFKRGVLKPNTWKPKLRYVKTDDELAWTLPAGGIVLGKSYKIKWRVHLGGGVASGTELPLTVSVAEWMEDLVVSVK 120
            D+   CLLGGN +   VQGHATRLLQG STKV KRARLGDEALSF+RG L+PNTW+PKLRYVKT+DELAWTLP GGIV GK+YKIKWR+ LG GVASGTELPLTV VA+WMEDLVV+ K
Sbjct:   60 DVIVSCLLGGNAT---VQGHATRLLQGHSTKVLKRARLGDEALSFQRGKLRPNTWRPKLRYVKTNDELAWTLPVGGIVFGKTYKIKWRIRLGRGVASGTELPLTVRVADWMEDLVVTAK 175          
BLAST of EWM21377.1 vs. NCBI_GenBank
Match: gi|585102369|gb|EWM21985.1| (hypothetical protein Naga_100745g2 [Nannochloropsis gaditana])

HSP 1 Score: 89.7373 bits (221), Expect = 5.746e-19
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 0
Query:   39 LGDEALSFKRGVLKPNTWKPKLRYVKTDDELAWTLPAGGIVLGKSYKIKWRVHLGGGVASGTELPLTVSVAEWMEDLVVSV 119
            +G   L+FKR  L+PNTW+PK RY    +E+ W LP  G VL K+YKIKW++ +  GV SGT+LP  + V   M+DL+V+V
Sbjct:  258 IGARELTFKRSTLRPNTWRPKPRYSIVGNEVVWQLPFDGFVLKKTYKIKWKLRVDRGVTSGTQLPFILRVGSNMQDLMVTV 338          
BLAST of EWM21377.1 vs. NCBI_GenBank
Match: gi|585103321|gb|EWM22729.1| (hypothetical protein Naga_100561g2 [Nannochloropsis gaditana] >gi|585103322|gb|EWM22730.1| hypothetical protein Naga_100561g2 [Nannochloropsis gaditana])

HSP 1 Score: 70.8626 bits (172), Expect = 4.491e-12
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 0
Query:   41 DEALSFKRGVLKPNTWKPKLRYVKTD--DELAWTLPAGGIVLGKSYKIKWRVHLGGGVASGTELPLTVSV-AEWMEDLVVSVK 120
            D  +SF R  + PNTW+PK+ Y   D  D L WTLP+ G  L K YKI   + +G  V SGT +PL +SV +EW ++L V VK
Sbjct:  261 DVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPLYLSVPSEWEQELGVVVK 343          
BLAST of EWM21377.1 vs. NCBI_GenBank
Match: gi|585103332|gb|EWM22739.1| (hypothetical protein Naga_100209g9 [Nannochloropsis gaditana])

HSP 1 Score: 70.0922 bits (170), Expect = 9.396e-12
Identity = 39/83 (46.99%), Postives = 50/83 (60.24%), Query Frame = 0
Query:   41 DEALSFKRGVLKPNTWKPKLRYVKTD--DELAWTLPAGGIVLGKSYKIKWRVHLGGGVASGTELPLTVSVA-EWMEDLVVSVK 120
            D  +SF R  + PNTW+PK+ Y   D  D L WTLP+ G  L K YKI   + +G  V SGT +PL +SV  EW ++L V VK
Sbjct:  261 DVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTVIPLYLSVPFEWEQELGVVVK 343          
BLAST of EWM21377.1 vs. NCBI_GenBank
Match: gi|553177188|ref|XP_005852441.1| (hypothetical protein NGA_0696000, partial [Nannochloropsis gaditana CCMP526] >gi|422296092|gb|EKU23391.1| hypothetical protein NGA_0696000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 60.077 bits (144), Expect = 4.450e-10
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0
Query:    2 DLPRGCLLGGNTSALHVQGHATRLLQGRSTKVFKRA 37
            D+   CLLGGNT+ LHVQGHATRLLQG STKV KRA
Sbjct:   10 DVVVSCLLGGNTTTLHVQGHATRLLQGHSTKVLKRA 45          
The following BLAST results are available for this feature:
BLAST of EWM21377.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585101591|gb|EWM21377.1|3.484e-81100.00hypothetical protein Naga_100424g5 [Nannochloropsi... [more]
gi|553176372|ref|XP_005852373.1|6.461e-6377.31hypothetical protein NGA_0690000 [Nannochloropsis ... [more]
gi|553178404|ref|XP_005852549.1|2.177e-5978.15hypothetical protein NGA_0710700, partial [Nannoch... [more]
gi|585102369|gb|EWM21985.1|5.746e-1949.38hypothetical protein Naga_100745g2 [Nannochloropsi... [more]
gi|585103321|gb|EWM22729.1|4.491e-1246.99hypothetical protein Naga_100561g2 [Nannochloropsi... [more]
gi|585103332|gb|EWM22739.1|9.396e-1246.99hypothetical protein Naga_100209g9 [Nannochloropsi... [more]
gi|553177188|ref|XP_005852441.1|4.450e-1077.78hypothetical protein NGA_0696000, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9322rna9322Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications