EWM21395.1, cds9284 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21395.1 vs. NCBI_GenBank
Match: gi|585101612|gb|EWM21395.1| (IKI3 family elongator complex protein [Nannochloropsis gaditana]) HSP 1 Score: 832.402 bits (2149), Expect = 0.000e+0 Identity = 412/412 (100.00%), Postives = 412/412 (100.00%), Query Frame = 0
Query: 1 MACVLSTGLVHVFQEGQGALFGDKPHEEHWLVDPVCSFHEPALSDTRQLVLLRTAPELGPEGGEEETPEEFSLLTVRWDEERQSDVLVEVTFAIPSSAIPSLSSSRSPSSTIVITSLDEAGVASDEENIAREDVSTSAQRSGHPLDSSRILRLQAWGGWKGNAALIETHEGAIYKYTRRRGLKKGGKEAHRSITWIMDMLEPCPWVGVVNVGGKKEGGGGGEVGRGEVVGLSTRARLYYGEHLLCNAVASVTVNPAFGMLMYVTLGSQPTLRFVTFRSLAGLDVMGGSEGGVVECPTEGRPVERGSRLIMSSFTSSTVLLQLPRGNLEVAAPHPLVLHQAARLLEVGRYGQAFSLLRRHRLDLNFMIDFAPRKFLEEVERLVVPQFGKLEDLNVFVSAVRDGDCVGGGSSSL 412
MACVLSTGLVHVFQEGQGALFGDKPHEEHWLVDPVCSFHEPALSDTRQLVLLRTAPELGPEGGEEETPEEFSLLTVRWDEERQSDVLVEVTFAIPSSAIPSLSSSRSPSSTIVITSLDEAGVASDEENIAREDVSTSAQRSGHPLDSSRILRLQAWGGWKGNAALIETHEGAIYKYTRRRGLKKGGKEAHRSITWIMDMLEPCPWVGVVNVGGKKEGGGGGEVGRGEVVGLSTRARLYYGEHLLCNAVASVTVNPAFGMLMYVTLGSQPTLRFVTFRSLAGLDVMGGSEGGVVECPTEGRPVERGSRLIMSSFTSSTVLLQLPRGNLEVAAPHPLVLHQAARLLEVGRYGQAFSLLRRHRLDLNFMIDFAPRKFLEEVERLVVPQFGKLEDLNVFVSAVRDGDCVGGGSSSL
Sbjct: 1 MACVLSTGLVHVFQEGQGALFGDKPHEEHWLVDPVCSFHEPALSDTRQLVLLRTAPELGPEGGEEETPEEFSLLTVRWDEERQSDVLVEVTFAIPSSAIPSLSSSRSPSSTIVITSLDEAGVASDEENIAREDVSTSAQRSGHPLDSSRILRLQAWGGWKGNAALIETHEGAIYKYTRRRGLKKGGKEAHRSITWIMDMLEPCPWVGVVNVGGKKEGGGGGEVGRGEVVGLSTRARLYYGEHLLCNAVASVTVNPAFGMLMYVTLGSQPTLRFVTFRSLAGLDVMGGSEGGVVECPTEGRPVERGSRLIMSSFTSSTVLLQLPRGNLEVAAPHPLVLHQAARLLEVGRYGQAFSLLRRHRLDLNFMIDFAPRKFLEEVERLVVPQFGKLEDLNVFVSAVRDGDCVGGGSSSL 412
BLAST of EWM21395.1 vs. NCBI_GenBank
Match: gi|219112607|ref|XP_002178055.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410940|gb|EEC50869.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 144.05 bits (362), Expect = 1.171e-33 Identity = 78/209 (37.32%), Postives = 115/209 (55.02%), Query Frame = 0
Query: 199 MLEPCPWVGVVNVGGKKEGGGGGEVGRGE---VVGLSTRARLYYGEHLLCNAVASVTVNPAFGMLMYVTLGSQPTLRFVTFRSLAGLDVMGGSEGGVVECPTEGRPVERGSRLIMSSFTSSTVLLQLPRGNLEVAAPHPLVLHQAARLLEVGRYGQAFSLLRRHRLDLNFMIDFAPRKFLEEVERLVVPQFGKLEDLNVFVSAVRDGDC 404
+LEPCPW+ + K G + + VVGLS R RLY + LLC+A +S V+ L +V+ GS +RF+ R L D + GSE V+ E R VERG+ L+ T +LQ+PRGNLE P LVL + + GRYG+AF ++RR ++DLN ++D P FL+ + + + + DLN+F+S ++ DC
Sbjct: 560 LLEPCPWIAAL----KNNTSVGESLNCHQSRIVVGLSARHRLYCNDLLLCDAASSFEVSMMHLYLCFVSSGSHCQMRFIALRDLWQFDPLMGSEENVLSVGFEPRNVERGTGLVAILPTQPAAVLQMPRGNLETIYPRALVLRYSLLKISDGRYGEAFRMMRRQKIDLNLIVDVNPWYFLDFGLAVFIKEVYNIHDLNLFISGLQASDC 764
BLAST of EWM21395.1 vs. NCBI_GenBank
Match: gi|224003571|ref|XP_002291457.1| (IKI3,-like protein to yeast IKI3, partial [Thalassiosira pseudonana CCMP1335] >gi|220973233|gb|EED91564.1| IKI3,-like protein to yeast IKI3, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 141.354 bits (355), Expect = 9.510e-33 Identity = 85/248 (34.27%), Postives = 135/248 (54.44%), Query Frame = 0
Query: 166 IETHEGAIYKYTRRRGLKKGGKEAHRSITWIMDMLEPCPWVG--------VVNVGGKKEGGGGGEVGRGEVVGLSTRARLYYGEHLLCNAVASVTVNPAFGMLMYVTLGSQPTLRFVTFRSLAGLDVMGGSEGGVVECPTEGRPVERGSRLIMSSFTSSTVLLQLPRGNLEVAAPHPLVLHQAARLLEVGRYGQAFSLLRRHRLDLNFMIDFAPRKFLEE--VERLVVPQFGKLEDLNVFVSAVRDGD 403
+ + G++ +Y+R G+ + + H +LEPCPW+ + +K E + V+GL++R RLY GE LL NA +S ++ G L +VTLGS+P LRF+ L D + GS+ + E R VERG+RL+ T+ +V+LQ+PRGNLE +P LVL + G Y + ++RR R+D+N ++DF P FLE+ E+ V Q +++ +N+F+S + D D
Sbjct: 370 VSINNGSLLEYSRG-GVIEPSEAGH--------LLEPCPWISGLYDANIDSTSTSSRKADNEHVEPSKRLVIGLASRFRLYCGERLLSNASSSFDISLQHGFLTHVTLGSRPQLRFIPLAVLRDFDPLMGSDENMALDGYEPRNVERGARLVAIFPTTPSVVLQMPRGNLESISPRALVLPFIMLKIRSGDYHTSLDIMRRQRVDMNLVVDFDPVHFLEQGGAEQF-VGQIERIDHINLFLSGLIDVD 607
BLAST of EWM21395.1 vs. NCBI_GenBank
Match: gi|1072235742|gb|OEU20470.1| (IKI3-domain-containing protein, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 130.954 bits (328), Expect = 3.100e-29 Identity = 80/256 (31.25%), Postives = 129/256 (50.39%), Query Frame = 0
Query: 152 RLQAWGGWKG--NAALIETHEGAIYKYTRRRGLKKGGKEAHRSITWIMDMLEPCPWVGVVNVGGKKEGGGGGEVGRGE--VVGLSTRARLYYGEHLLCNAVASVTVNPAFGMLMYVTLGSQPTLRFVTFRSLAGLDVMGGSEGGVVECPTEGRPVERGSRLIMSSFTSSTVLLQLPRGNLEVAAPHPLVLHQAARLLEVGRYGQAFSLLRRHRLDLNFMIDFAPRKFLEEVERLVVPQFGKLEDLNVFVSAVRDGD 403
RLQ W + L++ +G++ +Y R R E + +LE CPW+ + K+ + V GLS+R+RLY+ + +L + +S ++ L YVT GS+ +RF+ + L D + G E + E R VE+GSRL+ ++LQ+PRGNLE P LVL + G Y + F ++R+H++DLN ++D P++FLE V Q ++ LN+FVS ++D D
Sbjct: 334 RLQCAVQWSDSIDGCLLQLRDGSLLEYERSRSTSILPSE-------VEPLLELCPWIKAI-----KDSAPYSDTSHSSRLVFGLSSRSRLYFNDVMLTESASSFVLSLDHEFLSYVTSGSRCQVRFLPLKELHDFDPLMGLEHNYLLEGYEPRSVEQGSRLVAILPQQPQMILQMPRGNLEGVYPRALVLRFVMSRIIRGEYSETFRMMRKHKVDLNLIVDLHPKEFLESGISSFVKQVDVIDYLNLFVSNLQDYD 577
BLAST of EWM21395.1 vs. NCBI_GenBank
Match: gi|1210531715|dbj|GAX09682.1| (elongator complex protein 1 [Fistulifera solaris]) HSP 1 Score: 130.568 bits (327), Expect = 4.571e-29 Identity = 85/254 (33.46%), Postives = 131/254 (51.57%), Query Frame = 0
Query: 150 ILRLQAWGGWKGNAALIETHEGAIYKYTRRRGLKKGGKEAHRSITWIMDMLEPCPWVGVVNVGGKKEGGGGGEVGRGEVVGLSTRARLYYGEHLLCNAVASVTVNPAFGMLMYVTLGSQPTLRFVTFRSLAGLDVMGGSE--GGVVECPTEGRPVERGSRLIMSSFTSSTVLLQLPRGNLEVAAPHPLVLHQAARLLEVGRYGQAFSLLRRHRLDLNFMIDFAPRKFLEEVERLVVPQFGKLEDLNVFVSAVRD 401
IL + AW G AL+E ++G++Y+Y + + + LEPC W+ V + + G V VG + + RLY + LL V+S ++ G L YVT SQ LRFV LA D + GSE V+ E R VERG+ L+ TV+LQ+PRGNLE P LVL + + + A+ L+RRH++DLN ++D P FL+E +++ Q ++ LN+F+S++++
Sbjct: 548 ILTITAWSDAPG--ALVELNDGSLYEYYDGQVVPAT----------VEPFLEPCHWIEGCKVVPENDHGHNRLV-----VGKTLKGRLYCHDVLLAENVSSFFLSVPQGFLCYVTADSQFQLRFVHLSVLASFDPLLGSEEHQRVLSTGYEPRDVERGACLVCVRPEEPTVVLQMPRGNLEAIYPRALVLGYCMKNVLAREFKSAYELMRRHKVDLNLIVDLDPHFFLKEGVHILIDQVRNIDHLNLFISSLQN 784
BLAST of EWM21395.1 vs. NCBI_GenBank
Match: gi|1210521582|dbj|GAX19572.1| (elongator complex protein 1 [Fistulifera solaris]) HSP 1 Score: 129.413 bits (324), Expect = 1.245e-28 Identity = 85/254 (33.46%), Postives = 129/254 (50.79%), Query Frame = 0
Query: 150 ILRLQAWGGWKGNAALIETHEGAIYKYTRRRGLKKGGKEAHRSITWIMDMLEPCPWVGVVNVGGKKEGGGGGEVGRGEVVGLSTRARLYYGEHLLCNAVASVTVNPAFGMLMYVTLGSQPTLRFVTFRSLAGLDVMGGSE--GGVVECPTEGRPVERGSRLIMSSFTSSTVLLQLPRGNLEVAAPHPLVLHQAARLLEVGRYGQAFSLLRRHRLDLNFMIDFAPRKFLEEVERLVVPQFGKLEDLNVFVSAVRD 401
IL + AW G AL+E +G++Y+Y + H + LEPC W+ V + + G V VG + + RLY + LL V+S ++ G L YVT SQ LRFV LA D + GSE V+ E R VERG+ L+ T +LQ+PRGNLE P LVL + + + A+ L+RRH++DLN ++D P FL+E +++ Q ++ LN+F+S++++
Sbjct: 485 ILTITAWSDASG--ALVELIDGSLYEY----------DDGHVVPATVEPFLEPCHWIEGCKVVPENDHGHNRLV-----VGKTLKGRLYCHDVLLAENVSSFFLSVPQGFLCYVTADSQFQLRFVHLSVLASFDPLLGSEEHQRVLSTGYEPRDVERGACLVCVRPEEPTAVLQMPRGNLEAIYPRALVLGYCMKNVLAREFKSAYELMRRHKVDLNLIVDIDPPFFLKEGVHILIDQVRNIDHLNLFISSLQN 721
BLAST of EWM21395.1 vs. NCBI_GenBank
Match: gi|1207938052|ref|XP_021358569.1| (putative elongator complex protein 1 [Mizuhopecten yessoensis] >gi|1205898779|gb|OWF47940.1| Elongator complex protein 1 [Mizuhopecten yessoensis]) HSP 1 Score: 112.079 bits (279), Expect = 7.902e-23 Identity = 67/204 (32.84%), Postives = 109/204 (53.43%), Query Frame = 0
Query: 202 PCPWVGVVNVGGKKEGGGGGEVGRGEVVGLSTRARLYYGEHLLCNAVASVTVNPAFGMLMYVTLGSQPTLRFVTFRSLAGLDVMGGSEGGVVECPTEGRPVERGSRLIMSSFTSSTVLLQLPRGNLEVAAPHPLVLHQAARLLEVGRYGQAFSLLRRHRLDLNFMIDFAPRKFLEEVERLVVPQFGKLEDLNVFVSAVRDGDCV 405
PCP++ V ++GG+ EV VVGL+ R RLY + + + S+ V+ + +L +T + R + L L S+G R VERGSR++ + ++LQ+PRGNLE P LVL + L+ +GQAF +R+HRL+LN + D P+ FL+ V++ V Q ++ +N+F++ +R+ DC
Sbjct: 608 PCPYMCVCDIGGE-------EV----VVGLTDRYRLYVNDTEIASNCTSLAVHKDYLLLTSLTHTCRCISRQTKVQDLPTL-----SDGKAHPFDESVRRVERGSRIVCVIQGETKLVLQMPRGNLETIHPRALVLSAVRKYLDSLEFGQAFVCMRKHRLNLNLIYDHCPQSFLDNVQKF-VQQVKLVDYINLFLTDLREEDCT 794
BLAST of EWM21395.1 vs. NCBI_GenBank
Match: gi|1183430335|gb|ORY54599.1| (IKI3 family-domain-containing protein [Leucosporidium creatinivorum]) HSP 1 Score: 110.923 bits (276), Expect = 1.600e-22 Identity = 70/185 (37.84%), Postives = 99/185 (53.51%), Query Frame = 0
Query: 228 VVGLSTRARLYYGEHLLCNAVASVTVNPAFGMLMYVTLGSQPTLRFVTFRSL---AGLDVMGGSEGGVVECPTEG---RPVERGSRLIMSSFTSSTVLLQLPRGNLEVAAPHPLVLHQAARLLEVGRYGQAFSLLRRHRLDLNFMIDFAPRKFLEEVERLVVPQFGKLEDLNVFVSAVRDGDCVG 406
+VGLS RLY G LL + S T P F L+Y T + +FV +L A + +EG E +G R VERGS+++ +S+T++LQ+PRGNLEV P PLVL + L+ RY AF RRHR+DLN + D P F + V Q +++ LN+F+S ++D D
Sbjct: 615 LVGLSDSGRLYAGTRLLASDATSFTTTPDF--LIYTTFSHEA--KFVPLFTLERGASTPFVAHTEGMRKEKEEQGAIKRAVERGSKIVTVVPSSTTLVLQMPRGNLEVICPRPLVLRIVRQDLDQKRYRAAFLACRRHRIDLNILYDHDPASFKANLADFVA-QVKEVDHLNLFLSGLKDEDVTS 794
BLAST of EWM21395.1 vs. NCBI_GenBank
Match: gi|758974039|ref|XP_011387076.1| (hypothetical protein UMAG_01123 [Ustilago maydis 521] >gi|757948754|gb|KIS71218.1| hypothetical protein UMAG_01123 [Ustilago maydis 521]) HSP 1 Score: 109.768 bits (273), Expect = 4.305e-22 Identity = 62/189 (32.80%), Postives = 100/189 (52.91%), Query Frame = 0
Query: 217 GGGGGEVGRGEVVGLSTRARLYYGEHLLCNAVASVTVNPAFGMLMYVTLGSQPTLRFVTFRSLAGLDVMGGSEGGVVECPTEGRPVERGSRLIMSSFTSSTVLLQLPRGNLEVAAPHPLVLHQAARLLEVGRYGQAFSLLRRHRLDLNFMIDFAPRKFLEEVERLVVPQFGKLEDLNVFVSAVRDGDCV 405
G G+ + +++GL++ RL + ++ S T+ +F L++ + RF+ SL GG + E GR VERGSR++ + ++ +++LQ+PRGNLE P PLVL R ++ RYG AF + R HR+D+N + D P F+ V V Q ++ LN+F+S +RD D
Sbjct: 735 SGRAGQQSKIKIIGLASNGRLLAEKQVIAKDATSFTLVGSF--LVWTNTSHEA--RFLPLTSLGWTAAEGGRDASGSEAVDLGRRVERGSRIVTAVPSAMSLILQMPRGNLETIYPRPLVLEVVRRNIDAQRYGPAFRICRTHRMDVNILYDHDPEAFMRNVATF-VRQVADVDYLNLFLSGLRDEDVT 918
BLAST of EWM21395.1 vs. NCBI_GenBank
Match: gi|630963304|ref|XP_007878060.1| (hypothetical protein PFL1_02357 [Anthracocystis flocculosa PF-1] >gi|521586609|gb|EPQ30241.1| hypothetical protein PFL1_02357 [Anthracocystis flocculosa PF-1]) HSP 1 Score: 108.612 bits (270), Expect = 1.048e-21 Identity = 66/187 (35.29%), Postives = 97/187 (51.87%), Query Frame = 0
Query: 220 GGEVGRGEVVGLSTRARLYYGEHLLCNAVASVTVNPAFGMLMYVTLGSQPTLRFVTFRSLA-GLDVMGGSEGGVVECPTEGRPVERGSRLIMSSFTSSTVLLQLPRGNLEVAAPHPLVLHQAARLLEVGRYGQAFSLLRRHRLDLNFMIDFAPRKFLEEVERLVVPQFGKLEDLNVFVSAVRDGDCV 405
GG+ R ++GL+ RL+ HL+ S T+ +F V S RFV SL D GS + GR VERGSR+I + + ++LQ+PRGNLE+ P PLVL R L+ RYG AF R HR+D+N + D P F+ +++ V Q ++ +N+F+S +R+ D
Sbjct: 744 GGQASR--IIGLAASGRLFANSHLVAKDATSFTLAGSF----LVWTNSAHEARFVPIASLPFDDDAREGSAKAKEDAVDLGRRVERGSRIITAVPSLMALVLQMPRGNLEIICPRPLVLEVVRRDLDHQRYGPAFRTCRTHRMDVNVLYDHDPESFMSHLDKFVA-QVADVDHINLFLSGLRNEDVT 923 The following BLAST results are available for this feature:
BLAST of EWM21395.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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