EWM21395.1, cds9284 (CDS) Nannochloropsis gaditana

Overview
NameEWM21395.1
Unique Namecds9284
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:361412..361483 +
Alignment locationKK037252.1:361622..362771 +
Alignment locationKK037252.1:363062..363078 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21395.1
ProductIKI3 family elongator complex protein
Orig transcript idgnl|cribi|Naga_100215g9.1637.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:361412..361483 +
KK037252.1supercontigKK037252.1:361622..362771 +
KK037252.1supercontigKK037252.1:363062..363078 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR006849IKI3
Homology
BLAST of EWM21395.1 vs. NCBI_GenBank
Match: gi|585101612|gb|EWM21395.1| (IKI3 family elongator complex protein [Nannochloropsis gaditana])

HSP 1 Score: 832.402 bits (2149), Expect = 0.000e+0
Identity = 412/412 (100.00%), Postives = 412/412 (100.00%), Query Frame = 0
Query:    1 MACVLSTGLVHVFQEGQGALFGDKPHEEHWLVDPVCSFHEPALSDTRQLVLLRTAPELGPEGGEEETPEEFSLLTVRWDEERQSDVLVEVTFAIPSSAIPSLSSSRSPSSTIVITSLDEAGVASDEENIAREDVSTSAQRSGHPLDSSRILRLQAWGGWKGNAALIETHEGAIYKYTRRRGLKKGGKEAHRSITWIMDMLEPCPWVGVVNVGGKKEGGGGGEVGRGEVVGLSTRARLYYGEHLLCNAVASVTVNPAFGMLMYVTLGSQPTLRFVTFRSLAGLDVMGGSEGGVVECPTEGRPVERGSRLIMSSFTSSTVLLQLPRGNLEVAAPHPLVLHQAARLLEVGRYGQAFSLLRRHRLDLNFMIDFAPRKFLEEVERLVVPQFGKLEDLNVFVSAVRDGDCVGGGSSSL 412
            MACVLSTGLVHVFQEGQGALFGDKPHEEHWLVDPVCSFHEPALSDTRQLVLLRTAPELGPEGGEEETPEEFSLLTVRWDEERQSDVLVEVTFAIPSSAIPSLSSSRSPSSTIVITSLDEAGVASDEENIAREDVSTSAQRSGHPLDSSRILRLQAWGGWKGNAALIETHEGAIYKYTRRRGLKKGGKEAHRSITWIMDMLEPCPWVGVVNVGGKKEGGGGGEVGRGEVVGLSTRARLYYGEHLLCNAVASVTVNPAFGMLMYVTLGSQPTLRFVTFRSLAGLDVMGGSEGGVVECPTEGRPVERGSRLIMSSFTSSTVLLQLPRGNLEVAAPHPLVLHQAARLLEVGRYGQAFSLLRRHRLDLNFMIDFAPRKFLEEVERLVVPQFGKLEDLNVFVSAVRDGDCVGGGSSSL
Sbjct:    1 MACVLSTGLVHVFQEGQGALFGDKPHEEHWLVDPVCSFHEPALSDTRQLVLLRTAPELGPEGGEEETPEEFSLLTVRWDEERQSDVLVEVTFAIPSSAIPSLSSSRSPSSTIVITSLDEAGVASDEENIAREDVSTSAQRSGHPLDSSRILRLQAWGGWKGNAALIETHEGAIYKYTRRRGLKKGGKEAHRSITWIMDMLEPCPWVGVVNVGGKKEGGGGGEVGRGEVVGLSTRARLYYGEHLLCNAVASVTVNPAFGMLMYVTLGSQPTLRFVTFRSLAGLDVMGGSEGGVVECPTEGRPVERGSRLIMSSFTSSTVLLQLPRGNLEVAAPHPLVLHQAARLLEVGRYGQAFSLLRRHRLDLNFMIDFAPRKFLEEVERLVVPQFGKLEDLNVFVSAVRDGDCVGGGSSSL 412          
BLAST of EWM21395.1 vs. NCBI_GenBank
Match: gi|219112607|ref|XP_002178055.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410940|gb|EEC50869.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 144.05 bits (362), Expect = 1.171e-33
Identity = 78/209 (37.32%), Postives = 115/209 (55.02%), Query Frame = 0
Query:  199 MLEPCPWVGVVNVGGKKEGGGGGEVGRGE---VVGLSTRARLYYGEHLLCNAVASVTVNPAFGMLMYVTLGSQPTLRFVTFRSLAGLDVMGGSEGGVVECPTEGRPVERGSRLIMSSFTSSTVLLQLPRGNLEVAAPHPLVLHQAARLLEVGRYGQAFSLLRRHRLDLNFMIDFAPRKFLEEVERLVVPQFGKLEDLNVFVSAVRDGDC 404
            +LEPCPW+  +    K     G  +   +   VVGLS R RLY  + LLC+A +S  V+     L +V+ GS   +RF+  R L   D + GSE  V+    E R VERG+ L+    T    +LQ+PRGNLE   P  LVL  +   +  GRYG+AF ++RR ++DLN ++D  P  FL+    + + +   + DLN+F+S ++  DC
Sbjct:  560 LLEPCPWIAAL----KNNTSVGESLNCHQSRIVVGLSARHRLYCNDLLLCDAASSFEVSMMHLYLCFVSSGSHCQMRFIALRDLWQFDPLMGSEENVLSVGFEPRNVERGTGLVAILPTQPAAVLQMPRGNLETIYPRALVLRYSLLKISDGRYGEAFRMMRRQKIDLNLIVDVNPWYFLDFGLAVFIKEVYNIHDLNLFISGLQASDC 764          
BLAST of EWM21395.1 vs. NCBI_GenBank
Match: gi|224003571|ref|XP_002291457.1| (IKI3,-like protein to yeast IKI3, partial [Thalassiosira pseudonana CCMP1335] >gi|220973233|gb|EED91564.1| IKI3,-like protein to yeast IKI3, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 141.354 bits (355), Expect = 9.510e-33
Identity = 85/248 (34.27%), Postives = 135/248 (54.44%), Query Frame = 0
Query:  166 IETHEGAIYKYTRRRGLKKGGKEAHRSITWIMDMLEPCPWVG--------VVNVGGKKEGGGGGEVGRGEVVGLSTRARLYYGEHLLCNAVASVTVNPAFGMLMYVTLGSQPTLRFVTFRSLAGLDVMGGSEGGVVECPTEGRPVERGSRLIMSSFTSSTVLLQLPRGNLEVAAPHPLVLHQAARLLEVGRYGQAFSLLRRHRLDLNFMIDFAPRKFLEE--VERLVVPQFGKLEDLNVFVSAVRDGD 403
            +  + G++ +Y+R  G+ +  +  H        +LEPCPW+           +   +K      E  +  V+GL++R RLY GE LL NA +S  ++   G L +VTLGS+P LRF+    L   D + GS+  +     E R VERG+RL+    T+ +V+LQ+PRGNLE  +P  LVL      +  G Y  +  ++RR R+D+N ++DF P  FLE+   E+  V Q  +++ +N+F+S + D D
Sbjct:  370 VSINNGSLLEYSRG-GVIEPSEAGH--------LLEPCPWISGLYDANIDSTSTSSRKADNEHVEPSKRLVIGLASRFRLYCGERLLSNASSSFDISLQHGFLTHVTLGSRPQLRFIPLAVLRDFDPLMGSDENMALDGYEPRNVERGARLVAIFPTTPSVVLQMPRGNLESISPRALVLPFIMLKIRSGDYHTSLDIMRRQRVDMNLVVDFDPVHFLEQGGAEQF-VGQIERIDHINLFLSGLIDVD 607          
BLAST of EWM21395.1 vs. NCBI_GenBank
Match: gi|1072235742|gb|OEU20470.1| (IKI3-domain-containing protein, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 130.954 bits (328), Expect = 3.100e-29
Identity = 80/256 (31.25%), Postives = 129/256 (50.39%), Query Frame = 0
Query:  152 RLQAWGGWKG--NAALIETHEGAIYKYTRRRGLKKGGKEAHRSITWIMDMLEPCPWVGVVNVGGKKEGGGGGEVGRGE--VVGLSTRARLYYGEHLLCNAVASVTVNPAFGMLMYVTLGSQPTLRFVTFRSLAGLDVMGGSEGGVVECPTEGRPVERGSRLIMSSFTSSTVLLQLPRGNLEVAAPHPLVLHQAARLLEVGRYGQAFSLLRRHRLDLNFMIDFAPRKFLEEVERLVVPQFGKLEDLNVFVSAVRDGD 403
            RLQ    W    +  L++  +G++ +Y R R       E       +  +LE CPW+  +     K+     +       V GLS+R+RLY+ + +L  + +S  ++     L YVT GS+  +RF+  + L   D + G E   +    E R VE+GSRL+        ++LQ+PRGNLE   P  LVL      +  G Y + F ++R+H++DLN ++D  P++FLE      V Q   ++ LN+FVS ++D D
Sbjct:  334 RLQCAVQWSDSIDGCLLQLRDGSLLEYERSRSTSILPSE-------VEPLLELCPWIKAI-----KDSAPYSDTSHSSRLVFGLSSRSRLYFNDVMLTESASSFVLSLDHEFLSYVTSGSRCQVRFLPLKELHDFDPLMGLEHNYLLEGYEPRSVEQGSRLVAILPQQPQMILQMPRGNLEGVYPRALVLRFVMSRIIRGEYSETFRMMRKHKVDLNLIVDLHPKEFLESGISSFVKQVDVIDYLNLFVSNLQDYD 577          
BLAST of EWM21395.1 vs. NCBI_GenBank
Match: gi|1210531715|dbj|GAX09682.1| (elongator complex protein 1 [Fistulifera solaris])

HSP 1 Score: 130.568 bits (327), Expect = 4.571e-29
Identity = 85/254 (33.46%), Postives = 131/254 (51.57%), Query Frame = 0
Query:  150 ILRLQAWGGWKGNAALIETHEGAIYKYTRRRGLKKGGKEAHRSITWIMDMLEPCPWVGVVNVGGKKEGGGGGEVGRGEVVGLSTRARLYYGEHLLCNAVASVTVNPAFGMLMYVTLGSQPTLRFVTFRSLAGLDVMGGSE--GGVVECPTEGRPVERGSRLIMSSFTSSTVLLQLPRGNLEVAAPHPLVLHQAARLLEVGRYGQAFSLLRRHRLDLNFMIDFAPRKFLEEVERLVVPQFGKLEDLNVFVSAVRD 401
            IL + AW    G  AL+E ++G++Y+Y   + +             +   LEPC W+    V  + + G    V     VG + + RLY  + LL   V+S  ++   G L YVT  SQ  LRFV    LA  D + GSE    V+    E R VERG+ L+       TV+LQ+PRGNLE   P  LVL    + +    +  A+ L+RRH++DLN ++D  P  FL+E   +++ Q   ++ LN+F+S++++
Sbjct:  548 ILTITAWSDAPG--ALVELNDGSLYEYYDGQVVPAT----------VEPFLEPCHWIEGCKVVPENDHGHNRLV-----VGKTLKGRLYCHDVLLAENVSSFFLSVPQGFLCYVTADSQFQLRFVHLSVLASFDPLLGSEEHQRVLSTGYEPRDVERGACLVCVRPEEPTVVLQMPRGNLEAIYPRALVLGYCMKNVLAREFKSAYELMRRHKVDLNLIVDLDPHFFLKEGVHILIDQVRNIDHLNLFISSLQN 784          
BLAST of EWM21395.1 vs. NCBI_GenBank
Match: gi|1210521582|dbj|GAX19572.1| (elongator complex protein 1 [Fistulifera solaris])

HSP 1 Score: 129.413 bits (324), Expect = 1.245e-28
Identity = 85/254 (33.46%), Postives = 129/254 (50.79%), Query Frame = 0
Query:  150 ILRLQAWGGWKGNAALIETHEGAIYKYTRRRGLKKGGKEAHRSITWIMDMLEPCPWVGVVNVGGKKEGGGGGEVGRGEVVGLSTRARLYYGEHLLCNAVASVTVNPAFGMLMYVTLGSQPTLRFVTFRSLAGLDVMGGSE--GGVVECPTEGRPVERGSRLIMSSFTSSTVLLQLPRGNLEVAAPHPLVLHQAARLLEVGRYGQAFSLLRRHRLDLNFMIDFAPRKFLEEVERLVVPQFGKLEDLNVFVSAVRD 401
            IL + AW    G  AL+E  +G++Y+Y           + H     +   LEPC W+    V  + + G    V     VG + + RLY  + LL   V+S  ++   G L YVT  SQ  LRFV    LA  D + GSE    V+    E R VERG+ L+       T +LQ+PRGNLE   P  LVL    + +    +  A+ L+RRH++DLN ++D  P  FL+E   +++ Q   ++ LN+F+S++++
Sbjct:  485 ILTITAWSDASG--ALVELIDGSLYEY----------DDGHVVPATVEPFLEPCHWIEGCKVVPENDHGHNRLV-----VGKTLKGRLYCHDVLLAENVSSFFLSVPQGFLCYVTADSQFQLRFVHLSVLASFDPLLGSEEHQRVLSTGYEPRDVERGACLVCVRPEEPTAVLQMPRGNLEAIYPRALVLGYCMKNVLAREFKSAYELMRRHKVDLNLIVDIDPPFFLKEGVHILIDQVRNIDHLNLFISSLQN 721          
BLAST of EWM21395.1 vs. NCBI_GenBank
Match: gi|1207938052|ref|XP_021358569.1| (putative elongator complex protein 1 [Mizuhopecten yessoensis] >gi|1205898779|gb|OWF47940.1| Elongator complex protein 1 [Mizuhopecten yessoensis])

HSP 1 Score: 112.079 bits (279), Expect = 7.902e-23
Identity = 67/204 (32.84%), Postives = 109/204 (53.43%), Query Frame = 0
Query:  202 PCPWVGVVNVGGKKEGGGGGEVGRGEVVGLSTRARLYYGEHLLCNAVASVTVNPAFGMLMYVTLGSQPTLRFVTFRSLAGLDVMGGSEGGVVECPTEGRPVERGSRLIMSSFTSSTVLLQLPRGNLEVAAPHPLVLHQAARLLEVGRYGQAFSLLRRHRLDLNFMIDFAPRKFLEEVERLVVPQFGKLEDLNVFVSAVRDGDCV 405
            PCP++ V ++GG+       EV    VVGL+ R RLY  +  + +   S+ V+  + +L  +T   +   R    + L  L     S+G         R VERGSR++      + ++LQ+PRGNLE   P  LVL    + L+   +GQAF  +R+HRL+LN + D  P+ FL+ V++  V Q   ++ +N+F++ +R+ DC 
Sbjct:  608 PCPYMCVCDIGGE-------EV----VVGLTDRYRLYVNDTEIASNCTSLAVHKDYLLLTSLTHTCRCISRQTKVQDLPTL-----SDGKAHPFDESVRRVERGSRIVCVIQGETKLVLQMPRGNLETIHPRALVLSAVRKYLDSLEFGQAFVCMRKHRLNLNLIYDHCPQSFLDNVQKF-VQQVKLVDYINLFLTDLREEDCT 794          
BLAST of EWM21395.1 vs. NCBI_GenBank
Match: gi|1183430335|gb|ORY54599.1| (IKI3 family-domain-containing protein [Leucosporidium creatinivorum])

HSP 1 Score: 110.923 bits (276), Expect = 1.600e-22
Identity = 70/185 (37.84%), Postives = 99/185 (53.51%), Query Frame = 0
Query:  228 VVGLSTRARLYYGEHLLCNAVASVTVNPAFGMLMYVTLGSQPTLRFVTFRSL---AGLDVMGGSEGGVVECPTEG---RPVERGSRLIMSSFTSSTVLLQLPRGNLEVAAPHPLVLHQAARLLEVGRYGQAFSLLRRHRLDLNFMIDFAPRKFLEEVERLVVPQFGKLEDLNVFVSAVRDGDCVG 406
            +VGLS   RLY G  LL +   S T  P F  L+Y T   +   +FV   +L   A    +  +EG   E   +G   R VERGS+++    +S+T++LQ+PRGNLEV  P PLVL    + L+  RY  AF   RRHR+DLN + D  P  F   +   V  Q  +++ LN+F+S ++D D   
Sbjct:  615 LVGLSDSGRLYAGTRLLASDATSFTTTPDF--LIYTTFSHEA--KFVPLFTLERGASTPFVAHTEGMRKEKEEQGAIKRAVERGSKIVTVVPSSTTLVLQMPRGNLEVICPRPLVLRIVRQDLDQKRYRAAFLACRRHRIDLNILYDHDPASFKANLADFVA-QVKEVDHLNLFLSGLKDEDVTS 794          
BLAST of EWM21395.1 vs. NCBI_GenBank
Match: gi|758974039|ref|XP_011387076.1| (hypothetical protein UMAG_01123 [Ustilago maydis 521] >gi|757948754|gb|KIS71218.1| hypothetical protein UMAG_01123 [Ustilago maydis 521])

HSP 1 Score: 109.768 bits (273), Expect = 4.305e-22
Identity = 62/189 (32.80%), Postives = 100/189 (52.91%), Query Frame = 0
Query:  217 GGGGGEVGRGEVVGLSTRARLYYGEHLLCNAVASVTVNPAFGMLMYVTLGSQPTLRFVTFRSLAGLDVMGGSEGGVVECPTEGRPVERGSRLIMSSFTSSTVLLQLPRGNLEVAAPHPLVLHQAARLLEVGRYGQAFSLLRRHRLDLNFMIDFAPRKFLEEVERLVVPQFGKLEDLNVFVSAVRDGDCV 405
             G  G+  + +++GL++  RL   + ++     S T+  +F  L++     +   RF+   SL      GG +    E    GR VERGSR++ +  ++ +++LQ+PRGNLE   P PLVL    R ++  RYG AF + R HR+D+N + D  P  F+  V    V Q   ++ LN+F+S +RD D  
Sbjct:  735 SGRAGQQSKIKIIGLASNGRLLAEKQVIAKDATSFTLVGSF--LVWTNTSHEA--RFLPLTSLGWTAAEGGRDASGSEAVDLGRRVERGSRIVTAVPSAMSLILQMPRGNLETIYPRPLVLEVVRRNIDAQRYGPAFRICRTHRMDVNILYDHDPEAFMRNVATF-VRQVADVDYLNLFLSGLRDEDVT 918          
BLAST of EWM21395.1 vs. NCBI_GenBank
Match: gi|630963304|ref|XP_007878060.1| (hypothetical protein PFL1_02357 [Anthracocystis flocculosa PF-1] >gi|521586609|gb|EPQ30241.1| hypothetical protein PFL1_02357 [Anthracocystis flocculosa PF-1])

HSP 1 Score: 108.612 bits (270), Expect = 1.048e-21
Identity = 66/187 (35.29%), Postives = 97/187 (51.87%), Query Frame = 0
Query:  220 GGEVGRGEVVGLSTRARLYYGEHLLCNAVASVTVNPAFGMLMYVTLGSQPTLRFVTFRSLA-GLDVMGGSEGGVVECPTEGRPVERGSRLIMSSFTSSTVLLQLPRGNLEVAAPHPLVLHQAARLLEVGRYGQAFSLLRRHRLDLNFMIDFAPRKFLEEVERLVVPQFGKLEDLNVFVSAVRDGDCV 405
            GG+  R  ++GL+   RL+   HL+     S T+  +F     V   S    RFV   SL    D   GS     +    GR VERGSR+I +  +   ++LQ+PRGNLE+  P PLVL    R L+  RYG AF   R HR+D+N + D  P  F+  +++ V  Q   ++ +N+F+S +R+ D  
Sbjct:  744 GGQASR--IIGLAASGRLFANSHLVAKDATSFTLAGSF----LVWTNSAHEARFVPIASLPFDDDAREGSAKAKEDAVDLGRRVERGSRIITAVPSLMALVLQMPRGNLEIICPRPLVLEVVRRDLDHQRYGPAFRTCRTHRMDVNVLYDHDPESFMSHLDKFVA-QVADVDHINLFLSGLRNEDVT 923          
The following BLAST results are available for this feature:
BLAST of EWM21395.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101612|gb|EWM21395.1|0.000e+0100.00IKI3 family elongator complex protein [Nannochloro... [more]
gi|219112607|ref|XP_002178055.1|1.171e-3337.32predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|224003571|ref|XP_002291457.1|9.510e-3334.27IKI3,-like protein to yeast IKI3, partial [Thalass... [more]
gi|1072235742|gb|OEU20470.1|3.100e-2931.25IKI3-domain-containing protein, partial [Fragilari... [more]
gi|1210531715|dbj|GAX09682.1|4.571e-2933.46elongator complex protein 1 [Fistulifera solaris][more]
gi|1210521582|dbj|GAX19572.1|1.245e-2833.46elongator complex protein 1 [Fistulifera solaris][more]
gi|1207938052|ref|XP_021358569.1|7.902e-2332.84putative elongator complex protein 1 [Mizuhopecten... [more]
gi|1183430335|gb|ORY54599.1|1.600e-2237.84IKI3 family-domain-containing protein [Leucosporid... [more]
gi|758974039|ref|XP_011387076.1|4.305e-2232.80hypothetical protein UMAG_01123 [Ustilago maydis 5... [more]
gi|630963304|ref|XP_007878060.1|1.048e-2135.29hypothetical protein PFL1_02357 [Anthracocystis fl... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9314rna9314Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications