EWM21403.1, cds9271 (CDS) Nannochloropsis gaditana

Overview
NameEWM21403.1
Unique Namecds9271
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:326648..326655 -
Alignment locationKK037252.1:325977..326068 -
Alignment locationKK037252.1:325721..325795 -
Alignment locationKK037252.1:325504..325547 -
Alignment locationKK037252.1:325161..325269 -
Alignment locationKK037252.1:324811..324857 -
Alignment locationKK037252.1:324466..324756 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21403.1
Productpeptidyl-prolyl isomerase fkbp12
Orig transcript idgnl|cribi|Naga_100300g3.3770.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:326648..326655 -
KK037252.1supercontigKK037252.1:325977..326068 -
KK037252.1supercontigKK037252.1:325721..325795 -
KK037252.1supercontigKK037252.1:325504..325547 -
KK037252.1supercontigKK037252.1:325161..325269 -
KK037252.1supercontigKK037252.1:324811..324857 -
KK037252.1supercontigKK037252.1:324466..324756 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0016043cellular component organization
GO:0006464cellular protein modification process
GO:0007275multicellular organism development
GO:0006457protein folding
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR023566PPIase_FKBP
IPR001179PPIase_FKBP_dom
Homology
BLAST of EWM21403.1 vs. NCBI_GenBank
Match: gi|585101624|gb|EWM21403.1| (peptidyl-prolyl isomerase fkbp12 [Nannochloropsis gaditana])

HSP 1 Score: 454.907 bits (1169), Expect = 6.883e-162
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query:    1 MDWISLISINNPLSNMAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLSQEEREKGGVQVQRHLDVENLPATGTLFLCGREGVSLDVCTSIFTNKSWREVERGEGGLWGSCEVKGFGQNKGREAGSKEKNARKFESNVERDGRGT 221
            MDWISLISINNPLSNMAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLSQEEREKGGVQVQRHLDVENLPATGTLFLCGREGVSLDVCTSIFTNKSWREVERGEGGLWGSCEVKGFGQNKGREAGSKEKNARKFESNVERDGRGT
Sbjct:    1 MDWISLISINNPLSNMAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLSQEEREKGGVQVQRHLDVENLPATGTLFLCGREGVSLDVCTSIFTNKSWREVERGEGGLWGSCEVKGFGQNKGREAGSKEKNARKFESNVERDGRGT 221          
BLAST of EWM21403.1 vs. NCBI_GenBank
Match: gi|1137190157|gb|OMO63576.1| (hypothetical protein COLO4_32358 [Corchorus olitorius])

HSP 1 Score: 167.933 bits (424), Expect = 3.480e-50
Identity = 79/110 (71.82%), Postives = 89/110 (80.91%), Query Frame = 0
Query:   16 MAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLS 125
            M  EK V++ GTGP PTPG TVTVHC G GKN DL+  FWSTKDPGQQPF+FQIG G VI+ WDEGVM M+VGE A ++ +PDYAYGA+GFPAWGIQPNS L F IEVLS
Sbjct:    1 MGVEKQVVRSGTGPKPTPGQTVTVHCTGYGKNRDLSQKFWSTKDPGQQPFSFQIGKGSVIKGWDEGVMGMQVGEVAQLRCSPDYAYGASGFPAWGIQPNSELVFEIEVLS 110          
BLAST of EWM21403.1 vs. NCBI_GenBank
Match: gi|823160392|ref|XP_012480039.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP12 [Gossypium raimondii] >gi|1028971486|ref|XP_016729204.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP12 [Gossypium hirsutum] >gi|1029062970|ref|XP_016691733.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP12 [Gossypium hirsutum] >gi|1050618947|ref|XP_017632249.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP12 [Gossypium arboreum] >gi|763760274|gb|KJB27528.1| hypothetical protein B456_005G224600 [Gossypium raimondii])

HSP 1 Score: 167.933 bits (424), Expect = 4.144e-50
Identity = 79/110 (71.82%), Postives = 88/110 (80.00%), Query Frame = 0
Query:   16 MAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLS 125
            M  EK V++ GTGP PTPG TVTVHC G GKNGDL+  FWSTKDPGQQPF+FQIG G VI+ WDEGVM M+V E A ++ +PDYAYGA GFPAWGIQPNS L F IEVLS
Sbjct:    1 MGVEKQVIRPGTGPKPTPGQTVTVHCTGYGKNGDLSEKFWSTKDPGQQPFSFQIGKGSVIKGWDEGVMGMQVAEVARLRCSPDYAYGAGGFPAWGIQPNSVLEFEIEVLS 110          
BLAST of EWM21403.1 vs. NCBI_GenBank
Match: gi|1137218438|gb|OMO85216.1| (hypothetical protein CCACVL1_10354 [Corchorus capsularis])

HSP 1 Score: 168.318 bits (425), Expect = 4.789e-50
Identity = 79/113 (69.91%), Postives = 91/113 (80.53%), Query Frame = 0
Query:   16 MAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLSQEE 128
            M  EK V++ GTGP PTPG TVTVHC G GKN DL+  FWSTKDPGQQPF+FQIG G VI+ WDEGVM M+VGE A ++ +PDYAYGA+GFPAWGIQPNS L F IEVLS ++
Sbjct:    1 MGVEKQVVRPGTGPKPTPGQTVTVHCTGYGKNRDLSQKFWSTKDPGQQPFSFQIGKGSVIKGWDEGVMGMQVGEVAQLRCSPDYAYGASGFPAWGIQPNSELVFEIEVLSLKD 113          
BLAST of EWM21403.1 vs. NCBI_GenBank
Match: gi|976922915|gb|KVI07264.1| (Peptidyl-prolyl cis-trans isomerase, FKBP-type [Cynara cardunculus var. scolymus])

HSP 1 Score: 166.007 bits (419), Expect = 2.105e-49
Identity = 77/112 (68.75%), Postives = 88/112 (78.57%), Query Frame = 0
Query:   16 MAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLSQE 127
            M  EK V+Q GTGP P PG  VTVHC G GKNGDL+  FWSTKDPGQQPFTF+IG G+VI+ WDEGV+ M++GE A ++ TPDYAYGA GFPAWGIQPNS L F IEVL  +
Sbjct:    1 MGVEKEVIQAGTGPKPVPGQNVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFKIGQGQVIKGWDEGVLGMQLGEVARLRCTPDYAYGAGGFPAWGIQPNSALVFEIEVLRAQ 112          
BLAST of EWM21403.1 vs. NCBI_GenBank
Match: gi|573920685|ref|XP_006647940.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP12 [Oryza brachyantha])

HSP 1 Score: 165.236 bits (417), Expect = 4.230e-49
Identity = 76/112 (67.86%), Postives = 89/112 (79.46%), Query Frame = 0
Query:   16 MAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLSQE 127
            M FEK +++ GTGPTP  G  VTVHC G GK+GDL+  FWSTKDPGQ+PF+F IG G VI+ WDEGVMTM++GE A I+ TPDYAYGA GFPAWGI+PNS L F IEVLS +
Sbjct:    1 MGFEKQILKAGTGPTPVKGQKVTVHCTGFGKDGDLSKKFWSTKDPGQEPFSFNIGQGSVIKGWDEGVMTMQLGEVARIQCTPDYAYGAGGFPAWGIRPNSVLIFEIEVLSAQ 112          
BLAST of EWM21403.1 vs. NCBI_GenBank
Match: gi|944066201|gb|KQK01792.1| (hypothetical protein BRADI_3g58250 [Brachypodium distachyon])

HSP 1 Score: 165.236 bits (417), Expect = 4.467e-49
Identity = 76/112 (67.86%), Postives = 89/112 (79.46%), Query Frame = 0
Query:   16 MAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLSQE 127
            M FEK +++ GTGP P  G  VTVHC G GK+GDL+  FWSTKDPGQQPF+F IG+G VI+ WDEGVMTM++GE A I+ TPDYAYG+ GFPAWGIQPNS L F IEVLS +
Sbjct:    1 MGFEKEILKVGTGPKPVKGQKVTVHCTGYGKDGDLSKKFWSTKDPGQQPFSFNIGLGSVIKGWDEGVMTMQLGEIARIRCTPDYAYGSGGFPAWGIQPNSVLVFEIEVLSAK 112          
BLAST of EWM21403.1 vs. NCBI_GenBank
Match: gi|470108216|ref|XP_004290422.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP12-like [Fragaria vesca subsp. vesca] >gi|352962784|gb|AEQ63297.1| FK506-binding protein 12 [Fragaria x ananassa])

HSP 1 Score: 165.236 bits (417), Expect = 4.515e-49
Identity = 77/112 (68.75%), Postives = 87/112 (77.68%), Query Frame = 0
Query:   16 MAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLSQE 127
            M  EK V+  GTGP P PG  VTVHC G GKNGDLN  FWSTKDPGQQPF+F+IG G VI+ WDEGV+ M+VGE A ++ +PDYAYG+ GFPAWGIQPNS L F IEVLS E
Sbjct:    1 MGVEKEVLSAGTGPKPVPGQKVTVHCTGYGKNGDLNLKFWSTKDPGQQPFSFKIGQGSVIKGWDEGVLGMQVGEVARLRCSPDYAYGSGGFPAWGIQPNSVLVFEIEVLSLE 112          
BLAST of EWM21403.1 vs. NCBI_GenBank
Match: gi|590688168|ref|XP_007042871.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP12 [Theobroma cacao] >gi|508706806|gb|EOX98702.1| FK506-binding protein 12 [Theobroma cacao])

HSP 1 Score: 165.236 bits (417), Expect = 5.147e-49
Identity = 77/110 (70.00%), Postives = 89/110 (80.91%), Query Frame = 0
Query:   16 MAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLS 125
            M  EK V++ GTGP PTPG TVTVHC G GKNG+L+  FWSTKD GQQPF+FQIG G VI+ WDEGVM M+VGE A ++ +PDYAYGA GFPAWGIQPNS L+F IEVL+
Sbjct:    1 MGVEKQVLRPGTGPKPTPGQTVTVHCTGYGKNGNLSEKFWSTKDKGQQPFSFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPAWGIQPNSVLDFEIEVLT 110          
BLAST of EWM21403.1 vs. NCBI_GenBank
Match: gi|162462456|ref|NP_001105537.1| (uncharacterized protein LOC542519 [Zea mays] >gi|54111525|gb|AAV28625.1| immunophilin [Zea mays] >gi|195605690|gb|ACG24675.1| peptidyl-prolyl isomerase FKBP12 [Zea mays] >gi|195605704|gb|ACG24682.1| peptidyl-prolyl isomerase FKBP12 [Zea mays] >gi|195619378|gb|ACG31519.1| peptidyl-prolyl isomerase FKBP12 [Zea mays] >gi|195620748|gb|ACG32204.1| peptidyl-prolyl isomerase FKBP12 [Zea mays] >gi|195658115|gb|ACG48525.1| peptidyl-prolyl isomerase FKBP12 [Zea mays] >gi|1142711193|gb|AQK75117.1| Peptidyl-prolyl cis-trans isomerase FKBP12 [Zea mays])

HSP 1 Score: 164.466 bits (415), Expect = 7.961e-49
Identity = 77/112 (68.75%), Postives = 87/112 (77.68%), Query Frame = 0
Query:   16 MAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLSQE 127
            M FEK +++ GTGP P  G  VTVHC G GK+ DL+  FWSTKDPGQQPF+F IG G VI+ WDEGVMTM+VGE A I+ TPDYAYGA GFPAWGIQPNS L F IEVLS +
Sbjct:    1 MGFEKQILRSGTGPKPIKGQKVTVHCTGYGKDRDLSKKFWSTKDPGQQPFSFSIGQGSVIKGWDEGVMTMQVGEVARIQCTPDYAYGAGGFPAWGIQPNSVLVFEIEVLSAQ 112          
The following BLAST results are available for this feature:
BLAST of EWM21403.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101624|gb|EWM21403.1|6.883e-162100.00peptidyl-prolyl isomerase fkbp12 [Nannochloropsis ... [more]
gi|1137190157|gb|OMO63576.1|3.480e-5071.82hypothetical protein COLO4_32358 [Corchorus olitor... [more]
gi|823160392|ref|XP_012480039.1|4.144e-5071.82PREDICTED: peptidyl-prolyl cis-trans isomerase FKB... [more]
gi|1137218438|gb|OMO85216.1|4.789e-5069.91hypothetical protein CCACVL1_10354 [Corchorus caps... [more]
gi|976922915|gb|KVI07264.1|2.105e-4968.75Peptidyl-prolyl cis-trans isomerase, FKBP-type [Cy... [more]
gi|573920685|ref|XP_006647940.1|4.230e-4967.86PREDICTED: peptidyl-prolyl cis-trans isomerase FKB... [more]
gi|944066201|gb|KQK01792.1|4.467e-4967.86hypothetical protein BRADI_3g58250 [Brachypodium d... [more]
gi|470108216|ref|XP_004290422.1|4.515e-4968.75PREDICTED: peptidyl-prolyl cis-trans isomerase FKB... [more]
gi|590688168|ref|XP_007042871.1|5.147e-4970.00PREDICTED: peptidyl-prolyl cis-trans isomerase FKB... [more]
gi|162462456|ref|NP_001105537.1|7.961e-4968.75uncharacterized protein LOC542519 [Zea mays] >gi|5... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9301rna9301Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications