EWM21403.1, cds9271 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21403.1 vs. NCBI_GenBank
Match: gi|585101624|gb|EWM21403.1| (peptidyl-prolyl isomerase fkbp12 [Nannochloropsis gaditana]) HSP 1 Score: 454.907 bits (1169), Expect = 6.883e-162 Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query: 1 MDWISLISINNPLSNMAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLSQEEREKGGVQVQRHLDVENLPATGTLFLCGREGVSLDVCTSIFTNKSWREVERGEGGLWGSCEVKGFGQNKGREAGSKEKNARKFESNVERDGRGT 221
MDWISLISINNPLSNMAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLSQEEREKGGVQVQRHLDVENLPATGTLFLCGREGVSLDVCTSIFTNKSWREVERGEGGLWGSCEVKGFGQNKGREAGSKEKNARKFESNVERDGRGT
Sbjct: 1 MDWISLISINNPLSNMAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLSQEEREKGGVQVQRHLDVENLPATGTLFLCGREGVSLDVCTSIFTNKSWREVERGEGGLWGSCEVKGFGQNKGREAGSKEKNARKFESNVERDGRGT 221
BLAST of EWM21403.1 vs. NCBI_GenBank
Match: gi|1137190157|gb|OMO63576.1| (hypothetical protein COLO4_32358 [Corchorus olitorius]) HSP 1 Score: 167.933 bits (424), Expect = 3.480e-50 Identity = 79/110 (71.82%), Postives = 89/110 (80.91%), Query Frame = 0
Query: 16 MAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLS 125
M EK V++ GTGP PTPG TVTVHC G GKN DL+ FWSTKDPGQQPF+FQIG G VI+ WDEGVM M+VGE A ++ +PDYAYGA+GFPAWGIQPNS L F IEVLS
Sbjct: 1 MGVEKQVVRSGTGPKPTPGQTVTVHCTGYGKNRDLSQKFWSTKDPGQQPFSFQIGKGSVIKGWDEGVMGMQVGEVAQLRCSPDYAYGASGFPAWGIQPNSELVFEIEVLS 110
BLAST of EWM21403.1 vs. NCBI_GenBank
Match: gi|823160392|ref|XP_012480039.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP12 [Gossypium raimondii] >gi|1028971486|ref|XP_016729204.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP12 [Gossypium hirsutum] >gi|1029062970|ref|XP_016691733.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP12 [Gossypium hirsutum] >gi|1050618947|ref|XP_017632249.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP12 [Gossypium arboreum] >gi|763760274|gb|KJB27528.1| hypothetical protein B456_005G224600 [Gossypium raimondii]) HSP 1 Score: 167.933 bits (424), Expect = 4.144e-50 Identity = 79/110 (71.82%), Postives = 88/110 (80.00%), Query Frame = 0
Query: 16 MAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLS 125
M EK V++ GTGP PTPG TVTVHC G GKNGDL+ FWSTKDPGQQPF+FQIG G VI+ WDEGVM M+V E A ++ +PDYAYGA GFPAWGIQPNS L F IEVLS
Sbjct: 1 MGVEKQVIRPGTGPKPTPGQTVTVHCTGYGKNGDLSEKFWSTKDPGQQPFSFQIGKGSVIKGWDEGVMGMQVAEVARLRCSPDYAYGAGGFPAWGIQPNSVLEFEIEVLS 110
BLAST of EWM21403.1 vs. NCBI_GenBank
Match: gi|1137218438|gb|OMO85216.1| (hypothetical protein CCACVL1_10354 [Corchorus capsularis]) HSP 1 Score: 168.318 bits (425), Expect = 4.789e-50 Identity = 79/113 (69.91%), Postives = 91/113 (80.53%), Query Frame = 0
Query: 16 MAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLSQEE 128
M EK V++ GTGP PTPG TVTVHC G GKN DL+ FWSTKDPGQQPF+FQIG G VI+ WDEGVM M+VGE A ++ +PDYAYGA+GFPAWGIQPNS L F IEVLS ++
Sbjct: 1 MGVEKQVVRPGTGPKPTPGQTVTVHCTGYGKNRDLSQKFWSTKDPGQQPFSFQIGKGSVIKGWDEGVMGMQVGEVAQLRCSPDYAYGASGFPAWGIQPNSELVFEIEVLSLKD 113
BLAST of EWM21403.1 vs. NCBI_GenBank
Match: gi|976922915|gb|KVI07264.1| (Peptidyl-prolyl cis-trans isomerase, FKBP-type [Cynara cardunculus var. scolymus]) HSP 1 Score: 166.007 bits (419), Expect = 2.105e-49 Identity = 77/112 (68.75%), Postives = 88/112 (78.57%), Query Frame = 0
Query: 16 MAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLSQE 127
M EK V+Q GTGP P PG VTVHC G GKNGDL+ FWSTKDPGQQPFTF+IG G+VI+ WDEGV+ M++GE A ++ TPDYAYGA GFPAWGIQPNS L F IEVL +
Sbjct: 1 MGVEKEVIQAGTGPKPVPGQNVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFKIGQGQVIKGWDEGVLGMQLGEVARLRCTPDYAYGAGGFPAWGIQPNSALVFEIEVLRAQ 112
BLAST of EWM21403.1 vs. NCBI_GenBank
Match: gi|573920685|ref|XP_006647940.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP12 [Oryza brachyantha]) HSP 1 Score: 165.236 bits (417), Expect = 4.230e-49 Identity = 76/112 (67.86%), Postives = 89/112 (79.46%), Query Frame = 0
Query: 16 MAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLSQE 127
M FEK +++ GTGPTP G VTVHC G GK+GDL+ FWSTKDPGQ+PF+F IG G VI+ WDEGVMTM++GE A I+ TPDYAYGA GFPAWGI+PNS L F IEVLS +
Sbjct: 1 MGFEKQILKAGTGPTPVKGQKVTVHCTGFGKDGDLSKKFWSTKDPGQEPFSFNIGQGSVIKGWDEGVMTMQLGEVARIQCTPDYAYGAGGFPAWGIRPNSVLIFEIEVLSAQ 112
BLAST of EWM21403.1 vs. NCBI_GenBank
Match: gi|944066201|gb|KQK01792.1| (hypothetical protein BRADI_3g58250 [Brachypodium distachyon]) HSP 1 Score: 165.236 bits (417), Expect = 4.467e-49 Identity = 76/112 (67.86%), Postives = 89/112 (79.46%), Query Frame = 0
Query: 16 MAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLSQE 127
M FEK +++ GTGP P G VTVHC G GK+GDL+ FWSTKDPGQQPF+F IG+G VI+ WDEGVMTM++GE A I+ TPDYAYG+ GFPAWGIQPNS L F IEVLS +
Sbjct: 1 MGFEKEILKVGTGPKPVKGQKVTVHCTGYGKDGDLSKKFWSTKDPGQQPFSFNIGLGSVIKGWDEGVMTMQLGEIARIRCTPDYAYGSGGFPAWGIQPNSVLVFEIEVLSAK 112
BLAST of EWM21403.1 vs. NCBI_GenBank
Match: gi|470108216|ref|XP_004290422.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP12-like [Fragaria vesca subsp. vesca] >gi|352962784|gb|AEQ63297.1| FK506-binding protein 12 [Fragaria x ananassa]) HSP 1 Score: 165.236 bits (417), Expect = 4.515e-49 Identity = 77/112 (68.75%), Postives = 87/112 (77.68%), Query Frame = 0
Query: 16 MAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLSQE 127
M EK V+ GTGP P PG VTVHC G GKNGDLN FWSTKDPGQQPF+F+IG G VI+ WDEGV+ M+VGE A ++ +PDYAYG+ GFPAWGIQPNS L F IEVLS E
Sbjct: 1 MGVEKEVLSAGTGPKPVPGQKVTVHCTGYGKNGDLNLKFWSTKDPGQQPFSFKIGQGSVIKGWDEGVLGMQVGEVARLRCSPDYAYGSGGFPAWGIQPNSVLVFEIEVLSLE 112
BLAST of EWM21403.1 vs. NCBI_GenBank
Match: gi|590688168|ref|XP_007042871.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP12 [Theobroma cacao] >gi|508706806|gb|EOX98702.1| FK506-binding protein 12 [Theobroma cacao]) HSP 1 Score: 165.236 bits (417), Expect = 5.147e-49 Identity = 77/110 (70.00%), Postives = 89/110 (80.91%), Query Frame = 0
Query: 16 MAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLS 125
M EK V++ GTGP PTPG TVTVHC G GKNG+L+ FWSTKD GQQPF+FQIG G VI+ WDEGVM M+VGE A ++ +PDYAYGA GFPAWGIQPNS L+F IEVL+
Sbjct: 1 MGVEKQVLRPGTGPKPTPGQTVTVHCTGYGKNGNLSEKFWSTKDKGQQPFSFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPAWGIQPNSVLDFEIEVLT 110
BLAST of EWM21403.1 vs. NCBI_GenBank
Match: gi|162462456|ref|NP_001105537.1| (uncharacterized protein LOC542519 [Zea mays] >gi|54111525|gb|AAV28625.1| immunophilin [Zea mays] >gi|195605690|gb|ACG24675.1| peptidyl-prolyl isomerase FKBP12 [Zea mays] >gi|195605704|gb|ACG24682.1| peptidyl-prolyl isomerase FKBP12 [Zea mays] >gi|195619378|gb|ACG31519.1| peptidyl-prolyl isomerase FKBP12 [Zea mays] >gi|195620748|gb|ACG32204.1| peptidyl-prolyl isomerase FKBP12 [Zea mays] >gi|195658115|gb|ACG48525.1| peptidyl-prolyl isomerase FKBP12 [Zea mays] >gi|1142711193|gb|AQK75117.1| Peptidyl-prolyl cis-trans isomerase FKBP12 [Zea mays]) HSP 1 Score: 164.466 bits (415), Expect = 7.961e-49 Identity = 77/112 (68.75%), Postives = 87/112 (77.68%), Query Frame = 0
Query: 16 MAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLSQE 127
M FEK +++ GTGP P G VTVHC G GK+ DL+ FWSTKDPGQQPF+F IG G VI+ WDEGVMTM+VGE A I+ TPDYAYGA GFPAWGIQPNS L F IEVLS +
Sbjct: 1 MGFEKQILRSGTGPKPIKGQKVTVHCTGYGKDRDLSKKFWSTKDPGQQPFSFSIGQGSVIKGWDEGVMTMQVGEVARIQCTPDYAYGAGGFPAWGIQPNSVLVFEIEVLSAQ 112 The following BLAST results are available for this feature:
BLAST of EWM21403.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|