EWM21428.1, cds9256 (CDS) Nannochloropsis gaditana

Overview
NameEWM21428.1
Unique Namecds9256
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:288787..288952 -
Alignment locationKK037252.1:287943..288424 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21428.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100147g16.4609.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:288787..288952 -
KK037252.1supercontigKK037252.1:287943..288424 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM21428.1 vs. NCBI_GenBank
Match: gi|585101656|gb|EWM21428.1| (hypothetical protein Naga_100147g16 [Nannochloropsis gaditana])

HSP 1 Score: 435.261 bits (1118), Expect = 2.567e-154
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0 
Query:    1 MARSLHALFFLAVVSSIFNSIVCVSAFVPPLSPLSYIRREHHGLVDSSFLVDPITAPQNWPHAPQLSRLHSSSSSNSQSDEKNKRSKRRRRKQGGASSPSSPSALPSPSSYDASLEELIVDERKSALPRLEDLKMLKSGKAVGPDTGSTGGKPGILMPRELEEMKQKEKAKQATKGAPAYFDTMTKVTWAAIALLILAEVVAQVIPKASTVTPGG 215
            MARSLHALFFLAVVSSIFNSIVCVSAFVPPLSPLSYIRREHHGLVDSSFLVDPITAPQNWPHAPQLSRLHSSSSSNSQSDEKNKRSKRRRRKQGGASSPSSPSALPSPSSYDASLEELIVDERKSALPRLEDLKMLKSGKAVGPDTGSTGGKPGILMPRELEEMKQKEKAKQATKGAPAYFDTMTKVTWAAIALLILAEVVAQVIPKASTVTPGG
Sbjct:    1 MARSLHALFFLAVVSSIFNSIVCVSAFVPPLSPLSYIRREHHGLVDSSFLVDPITAPQNWPHAPQLSRLHSSSSSNSQSDEKNKRSKRRRRKQGGASSPSSPSALPSPSSYDASLEELIVDERKSALPRLEDLKMLKSGKAVGPDTGSTGGKPGILMPRELEEMKQKEKAKQATKGAPAYFDTMTKVTWAAIALLILAEVVAQVIPKASTVTPGG 215
[Close]
BLAST of EWM21428.1 vs. NCBI_GenBank
Match: gi|553190912|ref|XP_005855289.1| (hypothetical protein NGA_0126500, partial [Nannochloropsis gaditana CCMP526] >gi|422293767|gb|EKU21067.1| hypothetical protein NGA_0126500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 432.565 bits (1111), Expect = 1.300e-152
Identity = 214/215 (99.53%), Postives = 214/215 (99.53%), Query Frame = 0 
Query:    1 MARSLHALFFLAVVSSIFNSIVCVSAFVPPLSPLSYIRREHHGLVDSSFLVDPITAPQNWPHAPQLSRLHSSSSSNSQSDEKNKRSKRRRRKQGGASSPSSPSALPSPSSYDASLEELIVDERKSALPRLEDLKMLKSGKAVGPDTGSTGGKPGILMPRELEEMKQKEKAKQATKGAPAYFDTMTKVTWAAIALLILAEVVAQVIPKASTVTPGG 215
            MARSLHALFFLAVVSSIFNSIVCVSAFVPPLSPLSY RREHHGLVDSSFLVDPITAPQNWPHAPQLSRLHSSSSSNSQSDEKNKRSKRRRRKQGGASSPSSPSALPSPSSYDASLEELIVDERKSALPRLEDLKMLKSGKAVGPDTGSTGGKPGILMPRELEEMKQKEKAKQATKGAPAYFDTMTKVTWAAIALLILAEVVAQVIPKASTVTPGG
Sbjct:   45 MARSLHALFFLAVVSSIFNSIVCVSAFVPPLSPLSYTRREHHGLVDSSFLVDPITAPQNWPHAPQLSRLHSSSSSNSQSDEKNKRSKRRRRKQGGASSPSSPSALPSPSSYDASLEELIVDERKSALPRLEDLKMLKSGKAVGPDTGSTGGKPGILMPRELEEMKQKEKAKQATKGAPAYFDTMTKVTWAAIALLILAEVVAQVIPKASTVTPGG 259
The following BLAST results are available for this feature:
BLAST of EWM21428.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585101656|gb|EWM21428.1|2.567e-154100.00hypothetical protein Naga_100147g16 [Nannochlorops... [more]
gi|553190912|ref|XP_005855289.1|1.300e-15299.53hypothetical protein NGA_0126500, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9286rna9286Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications