EWM29776.1, cds925 (CDS) Nannochloropsis gaditana

Overview
NameEWM29776.1
Unique Namecds925
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:740052..740169 -
Alignment locationCM002456.1:739674..739870 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29776.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100022g38.875.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:740052..740169 -
CM002456.1supercontigCM002456.1:739674..739870 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM29776.1 vs. NCBI_GenBank
Match: gi|585112356|gb|EWM29776.1| (hypothetical protein Naga_100022g38 [Nannochloropsis gaditana])

HSP 1 Score: 213.772 bits (543), Expect = 2.926e-70
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0
Query:    1 MMMMMMMVAAPGAGKNAATLSTRNRNRITVVLVTLGITMAALLPYGIRKLRDGRSLYQSDKPLTGSQIMRGAYMNSSSQDIGPDPDYDFRSGEWHGRRNDPTKK 104
            MMMMMMMVAAPGAGKNAATLSTRNRNRITVVLVTLGITMAALLPYGIRKLRDGRSLYQSDKPLTGSQIMRGAYMNSSSQDIGPDPDYDFRSGEWHGRRNDPTKK
Sbjct:    1 MMMMMMMVAAPGAGKNAATLSTRNRNRITVVLVTLGITMAALLPYGIRKLRDGRSLYQSDKPLTGSQIMRGAYMNSSSQDIGPDPDYDFRSGEWHGRRNDPTKK 104          
BLAST of EWM29776.1 vs. NCBI_GenBank
Match: gi|698807508|ref|XP_009836783.1| (hypothetical protein H257_11511 [Aphanomyces astaci] >gi|574108339|gb|ETV73847.1| hypothetical protein H257_11511 [Aphanomyces astaci])

HSP 1 Score: 62.3882 bits (150), Expect = 1.329e-10
Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = 0
Query:   13 AGKNAATLSTRNRNRITVV-LVTLGITMAALLPYGIRKLRDGRSLYQSDKPLTGSQIMRGAYMNSSSQDIGPDPDYDFRSGEWHGRRN 99
            A +   TL +R  + + +   V LG      LPY I K + G++    + PL+ +++ RGA++NS S+DIGPDPD+ F +  + GRR+
Sbjct:    2 ASRAQRTLKSRRESSLLIGGFVLLGGLAMYSLPYFIVKGKQGQNTLAKEGPLSKTEVRRGAFLNSGSKDIGPDPDWSFVTNSYQGRRS 89          
BLAST of EWM29776.1 vs. NCBI_GenBank
Match: gi|695372497|ref|XP_009514826.1| (hypothetical protein PHYSODRAFT_470133 [Phytophthora sojae] >gi|348687737|gb|EGZ27551.1| hypothetical protein PHYSODRAFT_470133 [Phytophthora sojae])

HSP 1 Score: 60.8474 bits (146), Expect = 6.255e-10
Identity = 35/91 (38.46%), Postives = 48/91 (52.75%), Query Frame = 0
Query:   13 AGKNAATLSTRNRNRITVVLVTLGITMAALLPYGIRKLRDGRSLYQSDKPLTGSQIMRGAYMNSSSQDIGPDPDYDFRSGEWHGRRNDPTK 103
            AGK A  +  +  N   V    +  T    +P+ +     G +L   +KPL  SQI RGAY NS S+D G DPD+D ++G +HGRR    K
Sbjct:    3 AGKRA--MKAKGSNGPVVGFALVVATGFFSIPF-VAHYTKGANLTAQEKPLNASQIRRGAYANSGSRDAGVDPDWDLKTGTYHGRRGPSVK 90          
BLAST of EWM29776.1 vs. NCBI_GenBank
Match: gi|675196943|ref|XP_008907356.1| (hypothetical protein PPTG_13431 [Phytophthora parasitica INRA-310] >gi|566020951|gb|ETI43862.1| hypothetical protein F443_11327 [Phytophthora parasitica P1569] >gi|567958322|gb|ETK83911.1| hypothetical protein L915_11038 [Phytophthora parasitica] >gi|567987010|gb|ETL37325.1| hypothetical protein L916_10937 [Phytophthora parasitica] >gi|568016309|gb|ETL90486.1| hypothetical protein L917_10843 [Phytophthora parasitica] >gi|568046682|gb|ETM43787.1| hypothetical protein L914_10874 [Phytophthora parasitica] >gi|568092794|gb|ETN07599.1| hypothetical protein PPTG_13431 [Phytophthora parasitica INRA-310] >gi|570324594|gb|ETO72542.1| hypothetical protein F444_11394 [Phytophthora parasitica P1976] >gi|570948423|gb|ETP13680.1| hypothetical protein F441_11248 [Phytophthora parasitica CJ01A1] >gi|570981298|gb|ETP41742.1| hypothetical protein F442_11235 [Phytophthora parasitica P10297])

HSP 1 Score: 60.4622 bits (145), Expect = 7.831e-10
Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 0
Query:   43 LPYGIRKLRDGRSLYQSDKPLTGSQIMRGAYMNSSSQDIGPDPDYDFRSGEWHGRRNDPTK 103
            +P+ +     G +L   +KPL  SQI RGAY NS S+D G DPD+D  +G +HGRR    K
Sbjct:   35 IPF-VAHYTKGANLTAQEKPLNASQIRRGAYANSGSRDAGADPDWDMSTGTYHGRRGRSVK 94          
BLAST of EWM29776.1 vs. NCBI_GenBank
Match: gi|673031736|ref|XP_008869829.1| (hypothetical protein H310_06506 [Aphanomyces invadans] >gi|574474980|gb|ETW01981.1| hypothetical protein H310_06506 [Aphanomyces invadans])

HSP 1 Score: 60.4622 bits (145), Expect = 8.598e-10
Identity = 25/56 (44.64%), Postives = 40/56 (71.43%), Query Frame = 0
Query:   43 LPYGIRKLRDGRSLYQSDKPLTGSQIMRGAYMNSSSQDIGPDPDYDFRSGEWHGRR 98
            LPY I K + G++    + PL+ +++ RGA++NS S+DIGPDPD++F +  + GRR
Sbjct:   33 LPYVIVKGKQGQNTLSKEGPLSVTEVRRGAFLNSGSKDIGPDPDWNFETNSYQGRR 88          
BLAST of EWM29776.1 vs. NCBI_GenBank
Match: gi|1214691510|gb|OWZ06403.1| (hypothetical protein PHMEG_00021351 [Phytophthora megakarya])

HSP 1 Score: 58.9214 bits (141), Expect = 2.779e-9
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 0
Query:   43 LPYGIRKLRDGRSLYQSDKPLTGSQIMRGAYMNSSSQDIGPDPDYDFRSGEWHGRR 98
            +P+ +     G +L   +KPL  SQI RGAY NS S+D G DPD+D  +G +HGRR
Sbjct:   36 IPF-VAHYTKGANLTAQEKPLNASQIRRGAYANSGSRDAGVDPDWDLSTGTYHGRR 90          
BLAST of EWM29776.1 vs. NCBI_GenBank
Match: gi|325184417|emb|CCA18909.1| (hypothetical protein PITG_19672 [Albugo laibachii Nc14])

HSP 1 Score: 57.3806 bits (137), Expect = 9.803e-9
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 0
Query:   30 VVLVTLGITMAALL--PYGIRKLRDGRSLYQSDKPLTGSQIMRGAYMNSSSQDIGPDPDYDFRSGEWHGRR 98
            VV V   IT  A    PY    L+   +   ++K L+ SQ+ RGAY+N+ S+DIGPDPDYD ++  W+G R
Sbjct:   12 VVAVLALITAGAFFSVPYLSHYLKT-ENYQTTEKALSSSQVRRGAYLNTGSKDIGPDPDYDAKTRTWNGGR 81          
BLAST of EWM29776.1 vs. NCBI_GenBank
Match: gi|301092111|ref|XP_002896228.1| (hypothetical protein PITG_19672 [Phytophthora infestans T30-4] >gi|262094858|gb|EEY52910.1| hypothetical protein PITG_19672 [Phytophthora infestans T30-4])

HSP 1 Score: 56.9954 bits (136), Expect = 1.979e-8
Identity = 30/76 (39.47%), Postives = 43/76 (56.58%), Query Frame = 0
Query:   31 VLVTLGITMAA---LLPYGIRKLRDGRSLYQSDKPLTGSQIMRGAYMNSSSQDIGPDPDYDFRSGEWHGRRNDPTK 103
            ++  L + +AA    +P+ +     G +L   +KPL  SQI RGAY NS S+D G DPD+D  +G +H RR    K
Sbjct:   20 IVFGLSLVVAAGFFSIPF-VAHYTKGANLTAQEKPLNASQIRRGAYANSGSRDAGADPDWDLSTGTYHDRRGSSLK 94          
BLAST of EWM29776.1 vs. NCBI_GenBank
Match: gi|1173930926|gb|OQR83519.1| (hypothetical protein ACHHYP_14615 [Achlya hypogyna])

HSP 1 Score: 56.225 bits (134), Expect = 2.609e-8
Identity = 30/75 (40.00%), Postives = 46/75 (61.33%), Query Frame = 0
Query:   25 RNRITVVL-VTLGITMAALLPYGIRKLRDGRSLYQSDKPLTGSQIMRGAYMNSSSQDIGPDPDYDFRSGEWHGRR 98
            RN++ V L V  G  ++  LP+ I + +  ++    + PL+ SQI RG YMN+ S+DIG DPD+D  +  + GRR
Sbjct:    3 RNKLAVGLAVGAGGLLSFSLPFWIVQSKKDQNTMSMEGPLSTSQIRRGVYMNTGSKDIGRDPDWDLTTNTYKGRR 77          
The following BLAST results are available for this feature:
BLAST of EWM29776.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 9
Match NameE-valueIdentityDescription
gi|585112356|gb|EWM29776.1|2.926e-70100.00hypothetical protein Naga_100022g38 [Nannochlorops... [more]
gi|698807508|ref|XP_009836783.1|1.329e-1036.36hypothetical protein H257_11511 [Aphanomyces astac... [more]
gi|695372497|ref|XP_009514826.1|6.255e-1038.46hypothetical protein PHYSODRAFT_470133 [Phytophtho... [more]
gi|675196943|ref|XP_008907356.1|7.831e-1045.90hypothetical protein PPTG_13431 [Phytophthora para... [more]
gi|673031736|ref|XP_008869829.1|8.598e-1044.64hypothetical protein H310_06506 [Aphanomyces invad... [more]
gi|1214691510|gb|OWZ06403.1|2.779e-948.21hypothetical protein PHMEG_00021351 [Phytophthora ... [more]
gi|325184417|emb|CCA18909.1|9.803e-943.66hypothetical protein PITG_19672 [Albugo laibachii ... [more]
gi|301092111|ref|XP_002896228.1|1.979e-839.47hypothetical protein PITG_19672 [Phytophthora infe... [more]
gi|1173930926|gb|OQR83519.1|2.609e-840.00hypothetical protein ACHHYP_14615 [Achlya hypogyna... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna925rna925Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications