EWM21448.1, cds9211 (CDS) Nannochloropsis gaditana

Overview
NameEWM21448.1
Unique Namecds9211
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:182647..183114 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21448.1
ProductGolgin subfamily A member 7/ERF4
Orig transcript idgnl|cribi|Naga_100019g31.470.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:182647..183114 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR019383Golgin_A_7/ERF4
Homology
BLAST of EWM21448.1 vs. NCBI_GenBank
Match: gi|585101678|gb|EWM21448.1| (Golgin subfamily A member 7/ERF4 [Nannochloropsis gaditana])

HSP 1 Score: 318.161 bits (814), Expect = 5.406e-110
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0
Query:    1 MVFNAPRRAPPESLARPRKEVALLRATGLRFINGVSSSYDTTFPPVLENVLSESAFIEAIGRLNNVLAMYWPCTACFLCGYVFSPVTLGLSLACPRICVGEAEKHGQQELEQLNHSHLFRSLGMVWGLRKSLLQSWIVIELPVKAEGPEGDREER 155
            MVFNAPRRAPPESLARPRKEVALLRATGLRFINGVSSSYDTTFPPVLENVLSESAFIEAIGRLNNVLAMYWPCTACFLCGYVFSPVTLGLSLACPRICVGEAEKHGQQELEQLNHSHLFRSLGMVWGLRKSLLQSWIVIELPVKAEGPEGDREER
Sbjct:    1 MVFNAPRRAPPESLARPRKEVALLRATGLRFINGVSSSYDTTFPPVLENVLSESAFIEAIGRLNNVLAMYWPCTACFLCGYVFSPVTLGLSLACPRICVGEAEKHGQQELEQLNHSHLFRSLGMVWGLRKSLLQSWIVIELPVKAEGPEGDREER 155          
BLAST of EWM21448.1 vs. NCBI_GenBank
Match: gi|669147458|ref|XP_008609291.1| (hypothetical protein SDRG_05356 [Saprolegnia diclina VS20] >gi|530738887|gb|EQC37129.1| hypothetical protein SDRG_05356 [Saprolegnia diclina VS20])

HSP 1 Score: 113.62 bits (283), Expect = 3.684e-29
Identity = 51/138 (36.96%), Postives = 77/138 (55.80%), Query Frame = 0
Query:   14 LARPRKEVALLRATGLRFINGVSSSYDTTFPPVLENVLSESAFIEAIGRLNNVLAMYWPCTACFLCGYVFSPVTLGLSLACPRICVGEAEKHGQQELEQLNHSHLFRSLGMVWGLRKSLLQSWIVIELPVKAEGPEGD 151
            +A P +    L    +RF+NGVS +YD  FP  L +++ E+ F  AI ++NN L  YWPC  C   GY     T GLSL CP +C+ +AE++ +  ++++NH   F+ +G+ W   K   +SWI I  P      +GD
Sbjct:    1 MAMPGRTTVRLMPAHMRFVNGVSRAYDDEFPHELRHLVDETQFSHAINQINNTLTDYWPCLFCVCYGYACCVCTGGLSLLCPHMCISDAEQYARTLIDRINHRPCFQDVGVEWKFVKRCGRSWIEISFPTTNYSKKGD 138          
BLAST of EWM21448.1 vs. NCBI_GenBank
Match: gi|673050465|ref|XP_008879193.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574465189|gb|ETV92229.1| hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 112.464 bits (280), Expect = 1.378e-28
Identity = 50/137 (36.50%), Postives = 80/137 (58.39%), Query Frame = 0
Query:   10 PPESLARPRKEVALLRATGLRFINGVSSSYDTTFPPVLENVLSESAFIEAIGRLNNVLAMYWPCTACFLCGYVFSPVTLGLSLACPRICVGEAEKHGQQELEQLNHSHLFRSLGMVWGLRKSLLQSWIVIELPVKAE 146
            P  + AR  +    L    + FI+G+++ YD  FP  L+ +++E+ F +AI ++NN L  YWPC  C  CGY+    T GLSL CP +C+ +AE++ +  +E++N    F+   + W L K   +SWI I LP+K +
Sbjct:    3 PTMTAARKDRSRVFLMPQRMPFISGITNRYDDDFPIELDGLVTEAQFSQAINQINNTLTDYWPCLFCVCCGYLCCVCTAGLSLLCPNMCISDAEQYTRTLIERINARPCFKDADVEWKLVKKCCRSWIEISLPIKFD 139          
BLAST of EWM21448.1 vs. NCBI_GenBank
Match: gi|813132792|ref|XP_012197764.1| (hypothetical protein SPRG_19510 [Saprolegnia parasitica CBS 223.65] >gi|641537763|gb|KDO31607.1| hypothetical protein SPRG_19510 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 111.309 bits (277), Expect = 3.573e-28
Identity = 49/129 (37.98%), Postives = 74/129 (57.36%), Query Frame = 0
Query:   14 LARPRKEVALLRATGLRFINGVSSSYDTTFPPVLENVLSESAFIEAIGRLNNVLAMYWPCTACFLCGYVFSPVTLGLSLACPRICVGEAEKHGQQELEQLNHSHLFRSLGMVWGLRKSLLQSWIVIELP 142
            +A   +    L    +RF+NGVS +YD  FPP L +++ E+ F  AI ++NN L  YWPC  C   GY     T GLSL CP +C+ +AE++ +  ++++NH   F+ +G+ W   K   +SWI I  P
Sbjct:    1 MAMAARTTVRLMPAHMRFVNGVSRAYDDEFPPELRHLVDETQFTHAINQINNTLTDYWPCLFCVCYGYACCVCTGGLSLLCPHMCISDAEQYARTLIDRINHRPCFQDVGVEWKFVKRCGRSWIEISFP 129          
BLAST of EWM21448.1 vs. NCBI_GenBank
Match: gi|695393149|ref|XP_009520535.1| (hypothetical protein PHYSODRAFT_482152 [Phytophthora sojae] >gi|348685432|gb|EGZ25247.1| hypothetical protein PHYSODRAFT_482152 [Phytophthora sojae])

HSP 1 Score: 109.383 bits (272), Expect = 1.988e-27
Identity = 50/125 (40.00%), Postives = 75/125 (60.00%), Query Frame = 0
Query:   24 LRATGLRFINGVSSSYDTTFPPVLENVLSESAFIEAIGRLNNVLAMYWPCTACFLCGYVFSPVTLGLSLACPRICVGEAEKHGQQELEQLNHSHLFRSLGMVWGLRKSLLQSWIVIELPVKAEGP 148
            L  T +RF+ GV+ +Y+  FPP L +++ E+ F  AI ++NN +  YWPC  C  CGY   P TLGLSL CP  C+ +AE++ +  L ++N    F  +G+ W L +S  +SWI I  P+  + P
Sbjct:   36 LYPTRMRFVTGVARAYEDDFPPELSHLVKETDFEIAINQINNTMQDYWPCFFCIFCGYGCCPCTLGLSLFCPNFCIRDAEQYVRALLTRINKRVCFERVGVEWQLVRSCGRSWIQITYPLAPKKP 160          
BLAST of EWM21448.1 vs. NCBI_GenBank
Match: gi|673050463|ref|XP_008879192.1| (hypothetical protein H310_13461 [Aphanomyces invadans] >gi|574465188|gb|ETV92228.1| hypothetical protein H310_13461 [Aphanomyces invadans])

HSP 1 Score: 110.923 bits (276), Expect = 2.223e-27
Identity = 49/134 (36.57%), Postives = 78/134 (58.21%), Query Frame = 0
Query:   10 PPESLARPRKEVALLRATGLRFINGVSSSYDTTFPPVLENVLSESAFIEAIGRLNNVLAMYWPCTACFLCGYVFSPVTLGLSLACPRICVGEAEKHGQQELEQLNHSHLFRSLGMVWGLRKSLLQSWIVIELPV 143
            P  + AR  +    L    + FI+G+++ YD  FP  L+ +++E+ F +AI ++NN L  YWPC  C  CGY+    T GLSL CP +C+ +AE++ +  +E++N    F+   + W L K   +SWI I LP+
Sbjct:    3 PTMTAARKDRSRVFLMPQRMPFISGITNRYDDDFPIELDGLVTEAQFSQAINQINNTLTDYWPCLFCVCCGYLCCVCTAGLSLLCPNMCISDAEQYTRTLIERINARPCFKDADVEWKLVKKCCRSWIEISLPI 136          
BLAST of EWM21448.1 vs. NCBI_GenBank
Match: gi|1214689694|gb|OWZ05182.1| (Golgin subfamily A protein [Phytophthora megakarya])

HSP 1 Score: 106.686 bits (265), Expect = 2.475e-26
Identity = 50/125 (40.00%), Postives = 74/125 (59.20%), Query Frame = 0
Query:   24 LRATGLRFINGVSSSYDTTFPPVLENVLSESAFIEAIGRLNNVLAMYWPCTACFLCGYVFSPVTLGLSLACPRICVGEAEKHGQQELEQLNHSHLFRSLGMVWGLRKSLLQSWIVIELPVKAEGP 148
            L  T +RF+ GV+ +Y+  FP  L +++ E+ F  AI ++NN +  YWPC  C LCGY   P TLGLSL CP  C+ +AE++ +  L ++N    F   G+ W L +S  +SWI I  P+  + P
Sbjct:   32 LYPTRMRFVTGVARAYEDDFPFELSHLVKETDFEIAINQINNTMQDYWPCFLCILCGYGCCPCTLGLSLFCPNFCIRDAEQYVRALLTRINKRVCFERAGVEWQLERSCGKSWIQIAYPLAPKKP 156          
BLAST of EWM21448.1 vs. NCBI_GenBank
Match: gi|1173944501|gb|OQR93230.1| (hypothetical protein ACHHYP_20111 [Achlya hypogyna])

HSP 1 Score: 104.76 bits (260), Expect = 1.051e-25
Identity = 48/126 (38.10%), Postives = 72/126 (57.14%), Query Frame = 0
Query:   17 PRKEVALLRATGLRFINGVSSSYDTTFPPVLENVLSESAFIEAIGRLNNVLAMYWPCTACFLCGYVFSPVTLGLSLACPRICVGEAEKHGQQELEQLNHSHLFRSLGMVWGLRKSLLQSWIVIELP 142
            PR  V L+    +RF+NG+S +YD  FPP L+  + E+ F  AI ++NN L  YWPC  C   GY     T GLSL CP +C+ +AE++ +  ++++N    F   G+ W L K   +S+I +  P
Sbjct:    3 PRTTVRLM-PMHMRFVNGISRAYDDEFPPELQGRVDETQFTHAINQINNTLTDYWPCLFCVCYGYACCICTGGLSLLCPHMCISDAEQYARTLIDRINQRPCFEDAGVQWKLVKRCGRSYIEVSFP 127          
BLAST of EWM21448.1 vs. NCBI_GenBank
Match: gi|698806740|ref|XP_009836399.1| (hypothetical protein H257_11218 [Aphanomyces astaci] >gi|574108787|gb|ETV74293.1| hypothetical protein H257_11218 [Aphanomyces astaci])

HSP 1 Score: 103.219 bits (256), Expect = 4.977e-25
Identity = 48/129 (37.21%), Postives = 78/129 (60.47%), Query Frame = 0
Query:   18 RKEVALLRATGLRFINGVSSSYDTTFPPVLENVLSESAFIEAIGRLNNVLAMYWPCTACFLCGYVFSPVTLGLSLACPRICVGEAEKHGQQELEQLNHSHLFRSLGMVWGLRKSLLQSWIVIELPVKAE 146
            R+ V LL    + F++G+++ YD  FP  LE ++ E+ F +AI ++NN L  YWPC  C  CGY+    T GLSL CP +C+ +AE++ +  ++++N    F+   + W L K   +SW+ I +PVK +
Sbjct:    7 RRRVFLL-PQRMPFVSGMTNRYDDEFPMELEGMVPEAHFAQAINQINNTLTDYWPCFFCVCCGYLCCICTGGLSLLCPYMCISDAEQYTRTLIDRINIRPCFKDADIQWKLVKRCCRSWVEISIPVKPQ 134          
BLAST of EWM21448.1 vs. NCBI_GenBank
Match: gi|301115328|ref|XP_002905393.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262110182|gb|EEY68234.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 100.523 bits (249), Expect = 9.000e-24
Identity = 50/126 (39.68%), Postives = 73/126 (57.94%), Query Frame = 0
Query:   24 LRATGLRFINGVSSSYDTTFPPVLENV-LSESAFIEAIGRLNNVLAMYWPCTACFLCGYVFSPVTLGLSLACPRICVGEAEKHGQQELEQLNHSHLFRSLGMVWGLRKSLLQSWIVIELPVKAEGP 148
            L  T +RF+ GV+ +Y+  FP  L ++ + E+ F  AI ++NN +  YWPC  C  CGY   P TLGLSL CP  C+ +AE++ +  L ++N    F   G+ W L +S  QSWI I  P+  + P
Sbjct:   36 LYPTRVRFVTGVAQAYEDEFPSELSHLQVKEAEFEVAINQINNTMQDYWPCFFCICCGYGCCPCTLGLSLFCPNFCIRDAEQYVRALLTRINKRLCFERAGVEWQLVRSWGQSWIQITYPLVLKKP 161          
The following BLAST results are available for this feature:
BLAST of EWM21448.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101678|gb|EWM21448.1|5.406e-110100.00Golgin subfamily A member 7/ERF4 [Nannochloropsis ... [more]
gi|669147458|ref|XP_008609291.1|3.684e-2936.96hypothetical protein SDRG_05356 [Saprolegnia dicli... [more]
gi|673050465|ref|XP_008879193.1|1.378e-2836.50hypothetical protein, variant [Aphanomyces invadan... [more]
gi|813132792|ref|XP_012197764.1|3.573e-2837.98hypothetical protein SPRG_19510 [Saprolegnia paras... [more]
gi|695393149|ref|XP_009520535.1|1.988e-2740.00hypothetical protein PHYSODRAFT_482152 [Phytophtho... [more]
gi|673050463|ref|XP_008879192.1|2.223e-2736.57hypothetical protein H310_13461 [Aphanomyces invad... [more]
gi|1214689694|gb|OWZ05182.1|2.475e-2640.00Golgin subfamily A protein [Phytophthora megakarya... [more]
gi|1173944501|gb|OQR93230.1|1.051e-2538.10hypothetical protein ACHHYP_20111 [Achlya hypogyna... [more]
gi|698806740|ref|XP_009836399.1|4.977e-2537.21hypothetical protein H257_11218 [Aphanomyces astac... [more]
gi|301115328|ref|XP_002905393.1|9.000e-2439.68conserved hypothetical protein [Phytophthora infes... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9241rna9241Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications