EWM21470.1, cds9202 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21470.1 vs. NCBI_GenBank
Match: gi|585101700|gb|EWM21470.1| (ubiquitin-conjugating enzyme e2 i [Nannochloropsis gaditana]) HSP 1 Score: 336.65 bits (862), Expect = 3.375e-117 Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0
Query: 1 MSGGIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNTPAS 160
MSGGIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNTPAS
Sbjct: 1 MSGGIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNTPAS 160
BLAST of EWM21470.1 vs. NCBI_GenBank
Match: gi|223998414|ref|XP_002288880.1| (ubiquitin conjugating enzyme [Thalassiosira pseudonana CCMP1335] >gi|220975988|gb|EED94316.1| ubiquitin conjugating enzyme [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 267.314 bits (682), Expect = 1.056e-89 Identity = 119/159 (74.84%), Postives = 140/159 (88.05%), Query Frame = 0
Query: 2 SGGIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNTPAS 160
S GIARGRL EERKAWR+DHP+GF ARPV DGS +LM W+ IPGKEGTDWE GV+KV +EFS++YPSKPPKCKFVP LFHPNVYPSGT+CLSILNE+E WRPAITVKQMLLGIQDLLD+PNP SPAQ++AY LF+ N+ EY+RRV+ EA++NTP++
Sbjct: 3 SSGIARGRLAEERKAWRRDHPYGFYARPVSRGDGSSDLMKWETGIPGKEGTDWESGVYKVMLEFSDEYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEGWRPAITVKQMLLGIQDLLDTPNPNSPAQSEAYNLFINNKAEYKRRVKAEARKNTPST 161
BLAST of EWM21470.1 vs. NCBI_GenBank
Match: gi|1072231742|gb|OEU16474.1| (ubiquitin-conjugating enzyme [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 260.381 bits (664), Expect = 6.728e-87 Identity = 116/157 (73.89%), Postives = 137/157 (87.26%), Query Frame = 0
Query: 1 MSGGIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNT 157
MS GIARGRL EERKAWR+DHP+GF ARP DGS ++M W+ IPGKEGTDWE GV+KV+MEF+EDYPSKPPKCKFVP LFHPNVYPSGT+CLSILNE+E WRPAIT+KQ+L+GIQDLLD PNP SPAQ++AYQL++ N+ EY+RRV+ EAK+N
Sbjct: 1 MSSGIARGRLVEERKAWRRDHPYGFYARPTSKGDGSSDIMKWEAGIPGKEGTDWERGVYKVSMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEGWRPAITLKQVLIGIQDLLDDPNPNSPAQSEAYQLYMNNKPEYKRRVKNEAKKNV 157
BLAST of EWM21470.1 vs. NCBI_GenBank
Match: gi|1137210294|gb|OMO78887.1| (Ubiquitin-conjugating enzyme, E2 [Corchorus capsularis]) HSP 1 Score: 256.144 bits (653), Expect = 3.196e-85 Identity = 116/159 (72.96%), Postives = 131/159 (82.39%), Query Frame = 0
Query: 1 MSGGIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNTPA 159
MS GIAR RL EERKAWRK+HPHGFVARP ADGS+NLM W C IPGKEGTDWEGG F +T+ FSEDYPSKPPKCKF P FHPNVYPSGTVCLSILNED WRPAITVKQ+L+GIQDLLD PN PAQ + YQLFV+N EYR+R++++A++ P
Sbjct: 1 MSAGIARSRLAEERKAWRKNHPHGFVARPETAADGSVNLMVWHCVIPGKEGTDWEGGFFPLTIHFSEDYPSKPPKCKFPPGFFHPNVYPSGTVCLSILNEDYGWRPAITVKQILVGIQDLLDQPNASDPAQTEGYQLFVSNTAEYRKRIQLQAQQYPPT 159
BLAST of EWM21470.1 vs. NCBI_GenBank
Match: gi|397629774|gb|EJK69498.1| (hypothetical protein THAOC_09238 [Thalassiosira oceanica]) HSP 1 Score: 255.758 bits (652), Expect = 3.448e-85 Identity = 114/157 (72.61%), Postives = 134/157 (85.35%), Query Frame = 0
Query: 4 GIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNTPAS 160
GIA GRL+EERK+WR+DHP GF ARPV DGS NLM W+ IPGK GTDWEGG++KV + FS++YPSKPPKC FVP LFHPNVYPSGT+CLSILNE+E WRPAITVKQMLLGIQDLLD+PNP SPAQ++AY LF N+ EY+RRV+ EA++NT A+
Sbjct: 3 GIAIGRLKEERKSWRRDHPFGFYARPVSKGDGSTNLMEWETGIPGKAGTDWEGGIYKVKLVFSDEYPSKPPKCSFVPPLFHPNVYPSGTICLSILNEEEGWRPAITVKQMLLGIQDLLDTPNPNSPAQSEAYNLFQNNKAEYKRRVKAEARKNTTAT 159
BLAST of EWM21470.1 vs. NCBI_GenBank
Match: gi|219119898|ref|XP_002180700.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408173|gb|EEC48108.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 255.758 bits (652), Expect = 4.441e-85 Identity = 113/158 (71.52%), Postives = 135/158 (85.44%), Query Frame = 0
Query: 1 MSGGIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNTP 158
MS GIA+GRL EERKAWRKDHP GF ARP DGS ++ +W+ IPGK GTDWEGG+FKV MEFSE+YPS+PPKCKF P LFHPNVYPSGT+CLSILNE+E WRPAIT+KQ+L GIQDLLD PNP+SPAQ++A LF++N+ EY+RRV+IEA++N P
Sbjct: 1 MSAGIAKGRLSEERKAWRKDHPIGFYARPTSKGDGSSDMFTWEAGIPGKSGTDWEGGLFKVRMEFSEEYPSRPPKCKFFPPLFHPNVYPSGTICLSILNEEEGWRPAITIKQVLTGIQDLLDDPNPDSPAQSEAINLFLSNKAEYKRRVKIEARKNQP 158
BLAST of EWM21470.1 vs. NCBI_GenBank
Match: gi|1147563955|ref|XP_020085574.1| (SUMO-conjugating enzyme SCE1-like [Ananas comosus]) HSP 1 Score: 255.373 bits (651), Expect = 5.474e-85 Identity = 117/159 (73.58%), Postives = 132/159 (83.02%), Query Frame = 0
Query: 1 MSGGIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNTPA 159
MSGGIARGRL EERKAWRK+HPHGFVARP ADGS+NLM W+C+IPGK+GTDW+GG F +T+ FSEDYPSKPPKCKF FHPNVYPSGTVCLSILNED WRPAITVKQ+L+GIQDLLD PNP PAQ YQLF+ + EY+RRVR +AK+ P
Sbjct: 1 MSGGIARGRLAEERKAWRKNHPHGFVARPETLADGSVNLMVWNCTIPGKQGTDWDGGYFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDIAEYKRRVRQQAKQYPPV 159
BLAST of EWM21470.1 vs. NCBI_GenBank
Match: gi|743828911|ref|XP_010934002.1| (PREDICTED: SUMO-conjugating enzyme SCE1-like [Elaeis guineensis]) HSP 1 Score: 255.373 bits (651), Expect = 5.714e-85 Identity = 117/158 (74.05%), Postives = 131/158 (82.91%), Query Frame = 0
Query: 1 MSGGIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNTP 158
MSGGIARGRL EERKAWRK+HPHGFVA+P ADGS+NLM W+C+IPGK+GTDWEGG F +T+ FSEDYPSKPPKCKF FHPNVYPSGTVCLSILNED WRPAITVKQ+L+GIQDLLD PNP PAQ Y LF+ + EYRRRVR +AK+ P
Sbjct: 1 MSGGIARGRLAEERKAWRKNHPHGFVAKPETLADGSVNLMVWNCTIPGKQGTDWEGGYFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPNPSDPAQTDGYHLFIQDLTEYRRRVRQQAKQYPP 158
BLAST of EWM21470.1 vs. NCBI_GenBank
Match: gi|298713477|emb|CBJ27032.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 254.988 bits (650), Expect = 7.031e-85 Identity = 112/158 (70.89%), Postives = 136/158 (86.08%), Query Frame = 0
Query: 3 GGIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNTPAS 160
GIA RL+EERKAWR+DHP GF A+P+L D S +L+ W+C +PG TDW GG++ VTMEF+EDYPSKPPKCKFVP LFHPNVYPSGT+CLSIL+EDE WRPAIT+KQMLLGI DL D+PNP SPAQ++AYQLFVTN+EEY+RRVR+EA++N P++
Sbjct: 2 SGIAEARLREERKAWRRDHPVGFHAKPMLKDDSSTDLLRWECGLPGPADTDWAGGLYTVTMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILDEDEGWRPAITIKQMLLGIHDLFDTPNPNSPAQSEAYQLFVTNKEEYKRRVRLEAQKNIPST 159
BLAST of EWM21470.1 vs. NCBI_GenBank
Match: gi|670439462|ref|XP_008660103.1| (SUMO-conjugating enzyme SCE1 [Zea mays] >gi|1142848147|gb|AQL06233.1| SUMO-conjugating enzyme SCE1 [Zea mays]) HSP 1 Score: 254.603 bits (649), Expect = 1.344e-84 Identity = 115/155 (74.19%), Postives = 130/155 (83.87%), Query Frame = 0
Query: 1 MSGGIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKR 155
MSGGIARGRL EERKAWRK+HPHGFVARP DGS+NLM W+C+IPGK GTDWEGG + +T+ FSEDYPSKPPKCKF FHPNVYPSGTVCLSILNED DWRPAITVKQ+L+GIQDLLD PNP PAQ Y LF+ + EY+RRVR++AK+
Sbjct: 1 MSGGIARGRLAEERKAWRKNHPHGFVARPESLTDGSVNLMVWNCTIPGKHGTDWEGGYYPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSDWRPAITVKQILVGIQDLLDQPNPADPAQTDGYHLFIQDPAEYKRRVRLQAKQ 155 The following BLAST results are available for this feature:
BLAST of EWM21470.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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