EWM21470.1, cds9202 (CDS) Nannochloropsis gaditana

Overview
NameEWM21470.1
Unique Namecds9202
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:167791..167937 +
Alignment locationKK037252.1:168074..168409 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21470.1
Productubiquitin-conjugating enzyme e2 i
Orig transcript idgnl|cribi|Naga_100019g40.492.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:167791..167937 +
KK037252.1supercontigKK037252.1:168074..168409 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0000166nucleotide binding
GO:0019789SUMO transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR023313UBQ-conjugating_AS
IPR027230Ubc9
IPR000608UBQ-conjugat_E2
IPR016135UBQ-conjugating_enzyme/RWD
Homology
BLAST of EWM21470.1 vs. NCBI_GenBank
Match: gi|585101700|gb|EWM21470.1| (ubiquitin-conjugating enzyme e2 i [Nannochloropsis gaditana])

HSP 1 Score: 336.65 bits (862), Expect = 3.375e-117
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0
Query:    1 MSGGIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNTPAS 160
            MSGGIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNTPAS
Sbjct:    1 MSGGIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNTPAS 160          
BLAST of EWM21470.1 vs. NCBI_GenBank
Match: gi|223998414|ref|XP_002288880.1| (ubiquitin conjugating enzyme [Thalassiosira pseudonana CCMP1335] >gi|220975988|gb|EED94316.1| ubiquitin conjugating enzyme [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 267.314 bits (682), Expect = 1.056e-89
Identity = 119/159 (74.84%), Postives = 140/159 (88.05%), Query Frame = 0
Query:    2 SGGIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNTPAS 160
            S GIARGRL EERKAWR+DHP+GF ARPV   DGS +LM W+  IPGKEGTDWE GV+KV +EFS++YPSKPPKCKFVP LFHPNVYPSGT+CLSILNE+E WRPAITVKQMLLGIQDLLD+PNP SPAQ++AY LF+ N+ EY+RRV+ EA++NTP++
Sbjct:    3 SSGIARGRLAEERKAWRRDHPYGFYARPVSRGDGSSDLMKWETGIPGKEGTDWESGVYKVMLEFSDEYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEGWRPAITVKQMLLGIQDLLDTPNPNSPAQSEAYNLFINNKAEYKRRVKAEARKNTPST 161          
BLAST of EWM21470.1 vs. NCBI_GenBank
Match: gi|1072231742|gb|OEU16474.1| (ubiquitin-conjugating enzyme [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 260.381 bits (664), Expect = 6.728e-87
Identity = 116/157 (73.89%), Postives = 137/157 (87.26%), Query Frame = 0
Query:    1 MSGGIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNT 157
            MS GIARGRL EERKAWR+DHP+GF ARP    DGS ++M W+  IPGKEGTDWE GV+KV+MEF+EDYPSKPPKCKFVP LFHPNVYPSGT+CLSILNE+E WRPAIT+KQ+L+GIQDLLD PNP SPAQ++AYQL++ N+ EY+RRV+ EAK+N 
Sbjct:    1 MSSGIARGRLVEERKAWRRDHPYGFYARPTSKGDGSSDIMKWEAGIPGKEGTDWERGVYKVSMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEGWRPAITLKQVLIGIQDLLDDPNPNSPAQSEAYQLYMNNKPEYKRRVKNEAKKNV 157          
BLAST of EWM21470.1 vs. NCBI_GenBank
Match: gi|1137210294|gb|OMO78887.1| (Ubiquitin-conjugating enzyme, E2 [Corchorus capsularis])

HSP 1 Score: 256.144 bits (653), Expect = 3.196e-85
Identity = 116/159 (72.96%), Postives = 131/159 (82.39%), Query Frame = 0
Query:    1 MSGGIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNTPA 159
            MS GIAR RL EERKAWRK+HPHGFVARP   ADGS+NLM W C IPGKEGTDWEGG F +T+ FSEDYPSKPPKCKF P  FHPNVYPSGTVCLSILNED  WRPAITVKQ+L+GIQDLLD PN   PAQ + YQLFV+N  EYR+R++++A++  P 
Sbjct:    1 MSAGIARSRLAEERKAWRKNHPHGFVARPETAADGSVNLMVWHCVIPGKEGTDWEGGFFPLTIHFSEDYPSKPPKCKFPPGFFHPNVYPSGTVCLSILNEDYGWRPAITVKQILVGIQDLLDQPNASDPAQTEGYQLFVSNTAEYRKRIQLQAQQYPPT 159          
BLAST of EWM21470.1 vs. NCBI_GenBank
Match: gi|397629774|gb|EJK69498.1| (hypothetical protein THAOC_09238 [Thalassiosira oceanica])

HSP 1 Score: 255.758 bits (652), Expect = 3.448e-85
Identity = 114/157 (72.61%), Postives = 134/157 (85.35%), Query Frame = 0
Query:    4 GIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNTPAS 160
            GIA GRL+EERK+WR+DHP GF ARPV   DGS NLM W+  IPGK GTDWEGG++KV + FS++YPSKPPKC FVP LFHPNVYPSGT+CLSILNE+E WRPAITVKQMLLGIQDLLD+PNP SPAQ++AY LF  N+ EY+RRV+ EA++NT A+
Sbjct:    3 GIAIGRLKEERKSWRRDHPFGFYARPVSKGDGSTNLMEWETGIPGKAGTDWEGGIYKVKLVFSDEYPSKPPKCSFVPPLFHPNVYPSGTICLSILNEEEGWRPAITVKQMLLGIQDLLDTPNPNSPAQSEAYNLFQNNKAEYKRRVKAEARKNTTAT 159          
BLAST of EWM21470.1 vs. NCBI_GenBank
Match: gi|219119898|ref|XP_002180700.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408173|gb|EEC48108.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 255.758 bits (652), Expect = 4.441e-85
Identity = 113/158 (71.52%), Postives = 135/158 (85.44%), Query Frame = 0
Query:    1 MSGGIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNTP 158
            MS GIA+GRL EERKAWRKDHP GF ARP    DGS ++ +W+  IPGK GTDWEGG+FKV MEFSE+YPS+PPKCKF P LFHPNVYPSGT+CLSILNE+E WRPAIT+KQ+L GIQDLLD PNP+SPAQ++A  LF++N+ EY+RRV+IEA++N P
Sbjct:    1 MSAGIAKGRLSEERKAWRKDHPIGFYARPTSKGDGSSDMFTWEAGIPGKSGTDWEGGLFKVRMEFSEEYPSRPPKCKFFPPLFHPNVYPSGTICLSILNEEEGWRPAITIKQVLTGIQDLLDDPNPDSPAQSEAINLFLSNKAEYKRRVKIEARKNQP 158          
BLAST of EWM21470.1 vs. NCBI_GenBank
Match: gi|1147563955|ref|XP_020085574.1| (SUMO-conjugating enzyme SCE1-like [Ananas comosus])

HSP 1 Score: 255.373 bits (651), Expect = 5.474e-85
Identity = 117/159 (73.58%), Postives = 132/159 (83.02%), Query Frame = 0
Query:    1 MSGGIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNTPA 159
            MSGGIARGRL EERKAWRK+HPHGFVARP   ADGS+NLM W+C+IPGK+GTDW+GG F +T+ FSEDYPSKPPKCKF    FHPNVYPSGTVCLSILNED  WRPAITVKQ+L+GIQDLLD PNP  PAQ   YQLF+ +  EY+RRVR +AK+  P 
Sbjct:    1 MSGGIARGRLAEERKAWRKNHPHGFVARPETLADGSVNLMVWNCTIPGKQGTDWDGGYFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDIAEYKRRVRQQAKQYPPV 159          
BLAST of EWM21470.1 vs. NCBI_GenBank
Match: gi|743828911|ref|XP_010934002.1| (PREDICTED: SUMO-conjugating enzyme SCE1-like [Elaeis guineensis])

HSP 1 Score: 255.373 bits (651), Expect = 5.714e-85
Identity = 117/158 (74.05%), Postives = 131/158 (82.91%), Query Frame = 0
Query:    1 MSGGIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNTP 158
            MSGGIARGRL EERKAWRK+HPHGFVA+P   ADGS+NLM W+C+IPGK+GTDWEGG F +T+ FSEDYPSKPPKCKF    FHPNVYPSGTVCLSILNED  WRPAITVKQ+L+GIQDLLD PNP  PAQ   Y LF+ +  EYRRRVR +AK+  P
Sbjct:    1 MSGGIARGRLAEERKAWRKNHPHGFVAKPETLADGSVNLMVWNCTIPGKQGTDWEGGYFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPNPSDPAQTDGYHLFIQDLTEYRRRVRQQAKQYPP 158          
BLAST of EWM21470.1 vs. NCBI_GenBank
Match: gi|298713477|emb|CBJ27032.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 254.988 bits (650), Expect = 7.031e-85
Identity = 112/158 (70.89%), Postives = 136/158 (86.08%), Query Frame = 0
Query:    3 GGIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNTPAS 160
             GIA  RL+EERKAWR+DHP GF A+P+L  D S +L+ W+C +PG   TDW GG++ VTMEF+EDYPSKPPKCKFVP LFHPNVYPSGT+CLSIL+EDE WRPAIT+KQMLLGI DL D+PNP SPAQ++AYQLFVTN+EEY+RRVR+EA++N P++
Sbjct:    2 SGIAEARLREERKAWRRDHPVGFHAKPMLKDDSSTDLLRWECGLPGPADTDWAGGLYTVTMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILDEDEGWRPAITIKQMLLGIHDLFDTPNPNSPAQSEAYQLFVTNKEEYKRRVRLEAQKNIPST 159          
BLAST of EWM21470.1 vs. NCBI_GenBank
Match: gi|670439462|ref|XP_008660103.1| (SUMO-conjugating enzyme SCE1 [Zea mays] >gi|1142848147|gb|AQL06233.1| SUMO-conjugating enzyme SCE1 [Zea mays])

HSP 1 Score: 254.603 bits (649), Expect = 1.344e-84
Identity = 115/155 (74.19%), Postives = 130/155 (83.87%), Query Frame = 0
Query:    1 MSGGIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKR 155
            MSGGIARGRL EERKAWRK+HPHGFVARP    DGS+NLM W+C+IPGK GTDWEGG + +T+ FSEDYPSKPPKCKF    FHPNVYPSGTVCLSILNED DWRPAITVKQ+L+GIQDLLD PNP  PAQ   Y LF+ +  EY+RRVR++AK+
Sbjct:    1 MSGGIARGRLAEERKAWRKNHPHGFVARPESLTDGSVNLMVWNCTIPGKHGTDWEGGYYPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSDWRPAITVKQILVGIQDLLDQPNPADPAQTDGYHLFIQDPAEYKRRVRLQAKQ 155          
The following BLAST results are available for this feature:
BLAST of EWM21470.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101700|gb|EWM21470.1|3.375e-117100.00ubiquitin-conjugating enzyme e2 i [Nannochloropsis... [more]
gi|223998414|ref|XP_002288880.1|1.056e-8974.84ubiquitin conjugating enzyme [Thalassiosira pseudo... [more]
gi|1072231742|gb|OEU16474.1|6.728e-8773.89ubiquitin-conjugating enzyme [Fragilariopsis cylin... [more]
gi|1137210294|gb|OMO78887.1|3.196e-8572.96Ubiquitin-conjugating enzyme, E2 [Corchorus capsul... [more]
gi|397629774|gb|EJK69498.1|3.448e-8572.61hypothetical protein THAOC_09238 [Thalassiosira oc... [more]
gi|219119898|ref|XP_002180700.1|4.441e-8571.52predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1147563955|ref|XP_020085574.1|5.474e-8573.58SUMO-conjugating enzyme SCE1-like [Ananas comosus][more]
gi|743828911|ref|XP_010934002.1|5.714e-8574.05PREDICTED: SUMO-conjugating enzyme SCE1-like [Elae... [more]
gi|298713477|emb|CBJ27032.1|7.031e-8570.89conserved unknown protein [Ectocarpus siliculosus][more]
gi|670439462|ref|XP_008660103.1|1.344e-8474.19SUMO-conjugating enzyme SCE1 [Zea mays] >gi|114284... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9232rna9232Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications