EWM21476.1, cds9168 (CDS) Nannochloropsis gaditana

Overview
NameEWM21476.1
Unique Namecds9168
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:84256..84633 -
Alignment locationKK037252.1:82852..83988 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21476.1
ProductMitotic checkpoint protein PRCC
Orig transcript idgnl|cribi|Naga_100019g72.498.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:84256..84633 -
KK037252.1supercontigKK037252.1:82852..83988 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR018800PRCC
Homology
BLAST of EWM21476.1 vs. NCBI_GenBank
Match: gi|585101706|gb|EWM21476.1| (Mitotic checkpoint protein PRCC [Nannochloropsis gaditana])

HSP 1 Score: 1007.67 bits (2604), Expect = 0.000e+0
Identity = 504/504 (100.00%), Postives = 504/504 (100.00%), Query Frame = 0
Query:    1 MSLLGVDYGSDSEEDRPFAPPAPRPDPPVSPATTLSVSGTTAGNAPGSDSISTADSGQGEKHRRKKRKVKVAVSILPSHIQAALMRAAPLRRSTGQKEGPVTGVSDDEDDENDYADEVERKELDEEELERRRRIREQVAESKAVAKRQAAGATGLFALLPKPKVEKAMEKALKKSGDSAAEKKKDKGANMEADAVAVMGAASDKKEEGGDQGASSESDGAEEEKEEEEEEEEKEEEGLGLLHSSLMAGATAAALPRVSISQGMRGLAIPAPTAPAAAVGAEIRQPSTSLSVAASSELPASGSTGTMGHGAATSGLGESVGSREPQAYASYGGLWQGQENERAMRAHRAELDAYYAAEASRQPPLQMSPGSCLQPHAQEDDFEVPLSEQGSRRQKQRLQRELAAGNLSAVSKLGGQVVEVARREESWDPYRYGPPKKKEKVSIAATFYDTKTGETVTTTEASRTHKRRHQINTLAIQAAEREADLLEGKARSMQSKAQTQGKYGW 504
            MSLLGVDYGSDSEEDRPFAPPAPRPDPPVSPATTLSVSGTTAGNAPGSDSISTADSGQGEKHRRKKRKVKVAVSILPSHIQAALMRAAPLRRSTGQKEGPVTGVSDDEDDENDYADEVERKELDEEELERRRRIREQVAESKAVAKRQAAGATGLFALLPKPKVEKAMEKALKKSGDSAAEKKKDKGANMEADAVAVMGAASDKKEEGGDQGASSESDGAEEEKEEEEEEEEKEEEGLGLLHSSLMAGATAAALPRVSISQGMRGLAIPAPTAPAAAVGAEIRQPSTSLSVAASSELPASGSTGTMGHGAATSGLGESVGSREPQAYASYGGLWQGQENERAMRAHRAELDAYYAAEASRQPPLQMSPGSCLQPHAQEDDFEVPLSEQGSRRQKQRLQRELAAGNLSAVSKLGGQVVEVARREESWDPYRYGPPKKKEKVSIAATFYDTKTGETVTTTEASRTHKRRHQINTLAIQAAEREADLLEGKARSMQSKAQTQGKYGW
Sbjct:    1 MSLLGVDYGSDSEEDRPFAPPAPRPDPPVSPATTLSVSGTTAGNAPGSDSISTADSGQGEKHRRKKRKVKVAVSILPSHIQAALMRAAPLRRSTGQKEGPVTGVSDDEDDENDYADEVERKELDEEELERRRRIREQVAESKAVAKRQAAGATGLFALLPKPKVEKAMEKALKKSGDSAAEKKKDKGANMEADAVAVMGAASDKKEEGGDQGASSESDGAEEEKEEEEEEEEKEEEGLGLLHSSLMAGATAAALPRVSISQGMRGLAIPAPTAPAAAVGAEIRQPSTSLSVAASSELPASGSTGTMGHGAATSGLGESVGSREPQAYASYGGLWQGQENERAMRAHRAELDAYYAAEASRQPPLQMSPGSCLQPHAQEDDFEVPLSEQGSRRQKQRLQRELAAGNLSAVSKLGGQVVEVARREESWDPYRYGPPKKKEKVSIAATFYDTKTGETVTTTEASRTHKRRHQINTLAIQAAEREADLLEGKARSMQSKAQTQGKYGW 504          
BLAST of EWM21476.1 vs. NCBI_GenBank
Match: gi|553196129|ref|XP_005856276.1| (hypothetical protein NGA_2119710, partial [Nannochloropsis gaditana CCMP526] >gi|422292790|gb|EKU20092.1| hypothetical protein NGA_2119710, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 494.197 bits (1271), Expect = 2.336e-172
Identity = 243/244 (99.59%), Postives = 243/244 (99.59%), Query Frame = 0
Query:  260 SQGMRGLAIPAPTAPAAAVGAEIRQPSTSLSVAASSELPASGSTGTMGHGAATSGLGESVGSREPQAYASYGGLWQGQENERAMRAHRAELDAYYAAEASRQPPLQMSPGSCLQPHAQEDDFEVPLSEQGSRRQKQRLQRELAAGNLSAVSKLGGQVVEVARREESWDPYRYGPPKKKEKVSIAATFYDTKTGETVTTTEASRTHKRRHQINTLAIQAAEREADLLEGKARSMQSKAQTQGKYG 503
            SQGMRGLAIPAPTAPAAAVGAEIRQPSTSLSVAASSELPASGSTGTMGHGAATSGLGESVGSREPQAYASYGGLWQGQENERAMRAHRAELDAYYAAEASRQPPLQMS GSCLQPHAQEDDFEVPLSEQGSRRQKQRLQRELAAGNLSAVSKLGGQVVEVARREESWDPYRYGPPKKKEKVSIAATFYDTKTGETVTTTEASRTHKRRHQINTLAIQAAEREADLLEGKARSMQSKAQTQGKYG
Sbjct:    1 SQGMRGLAIPAPTAPAAAVGAEIRQPSTSLSVAASSELPASGSTGTMGHGAATSGLGESVGSREPQAYASYGGLWQGQENERAMRAHRAELDAYYAAEASRQPPLQMSLGSCLQPHAQEDDFEVPLSEQGSRRQKQRLQRELAAGNLSAVSKLGGQVVEVARREESWDPYRYGPPKKKEKVSIAATFYDTKTGETVTTTEASRTHKRRHQINTLAIQAAEREADLLEGKARSMQSKAQTQGKYG 244          
BLAST of EWM21476.1 vs. NCBI_GenBank
Match: gi|299470045|emb|CBN79222.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 81.2629 bits (199), Expect = 1.957e-13
Identity = 49/120 (40.83%), Postives = 70/120 (58.33%), Query Frame = 0
Query:  390 SRRQKQRLQRELAAGNLSAVSKLGGQ--VVEVARREESWDPYRYGPPK---KKEKVSIAATFYDTKTGETVTTTEASRTHKRRHQINTLAIQAAEREADLLEGKARSMQSKAQTQGKYGW 504
            +RR+ + ++R LA GNL A   LG +  V+++ +    ++P R  P      +E+  I ++ YD  TG+TV T E +   KR+HQIN LA QAA  E DL+E    S  +KAQT  KYGW
Sbjct:  163 TRRKGRDMERALARGNLGA---LGSEMPVMDLEQGSNEYNPLRTKPTTAAMNQEQKHIESSVYDPSTGKTVKTLEPTSMQKRKHQINQLAAQAASMERDLMERSGASRLTKAQTHAKYGW 279          
BLAST of EWM21476.1 vs. NCBI_GenBank
Match: gi|325190497|emb|CCA24996.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 72.7886 bits (177), Expect = 9.641e-11
Identity = 47/139 (33.81%), Postives = 77/139 (55.40%), Query Frame = 0
Query:  373 QPHAQEDDFEVPLSEQGSRRQKQRL-----QRELAAGNLSAVSKLGGQVVEVARRE-ESWDP-YRYGPPKKKEKVSIAATFYDTKTGETVTTTEASRTHKRRHQINTLAIQAAEREADLLEGKARSMQSKAQTQGKYGW 504
            QP+ Q    E  + +  S R + RL     +R L  G   A+S     + EV   + +SW P        KKE+V++AA+F++ + G  V++ + +R  +++HQ+N LA  A  RE DLL  K  +++++A+TQ KYGW
Sbjct:  125 QPYMQHYSGERMIKDAASNRTRARLNERALERALEKGQFDALSP-DLPIKEVQGPDGDSWKPTIEMIEAIKKEEVNVAASFWNARVGGRVSSIKPTRLQRQKHQLNQLAFDARAREQDLLNKKGLAIKTRAETQAKYGW 262          
BLAST of EWM21476.1 vs. NCBI_GenBank
Match: gi|635359260|emb|CCI50628.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 72.0182 bits (175), Expect = 2.000e-10
Identity = 43/116 (37.07%), Postives = 71/116 (61.21%), Query Frame = 0
Query:  392 RQKQR-LQRELAAGNLSAVSKLGGQVVEVARRE-ESWDPY-RYGPPKKKEKVSIAATFYDTKTGETVTTTEASRTHKRRHQINTLAIQAAEREADLLEGKARSMQSKAQTQGKYGW 504
            R K+R L+R L  G   A+S     + EV   + +SW P        KKE+V++AA+F++++ G  V++ + +R  +++HQ+N LA  A  RE DLL  K  +++++A+TQ KYGW
Sbjct:  148 RLKERALERALEKGQFDALSS-DLPIKEVQGPDGDSWKPTTEMIEAIKKEEVNVAASFWNSRVGGKVSSMKPTRLQRQKHQLNQLAFDARAREEDLLNKKGLAIKTRAETQAKYGW 262          
BLAST of EWM21476.1 vs. NCBI_GenBank
Match: gi|1173945976|gb|OQR94552.1| (hypothetical protein ACHHYP_01151 [Achlya hypogyna])

HSP 1 Score: 70.4774 bits (171), Expect = 5.347e-10
Identity = 46/145 (31.72%), Postives = 76/145 (52.41%), Query Frame = 0
Query:  365 QMSPGSCLQPHAQEDDFEVPLSEQGSRRQKQRLQRELAAGNLSAVSKLGGQVVEVA-RREESWDPYRYGP----PKKKEKVSIAATFYDTKTGETVTTTEASRTHKRRHQINTLAIQAAEREADLLEGKARSMQSKAQTQGKYGW 504
             + PG+C+     E   + PL  + +R ++++L+R L  GN  AV+    +VV+V     ++W P   G       ++ +V       +T+ G  V +   SR  ++RHQ+N L   A  RE DLL+ K  +++SK +TQ KYGW
Sbjct:  121 HLVPGACVL----ESKHKRPLQGKRARNKERQLERMLQQGNFDAVA---NKVVDVTGAAPDAWKPSNDGSMLFAADREAQVLAEMAGTETENGYVVASYRPSRLQRQRHQLNQLTFDAKLREFDLLDKKGLALKSKRETQAKYGW 258          
BLAST of EWM21476.1 vs. NCBI_GenBank
Match: gi|697890789|ref|XP_009690636.1| (conserved hypothetical protein [Theileria orientalis strain Shintoku] >gi|403222203|dbj|BAM40335.1| conserved hypothetical protein [Theileria orientalis strain Shintoku])

HSP 1 Score: 68.9366 bits (167), Expect = 3.109e-9
Identity = 31/68 (45.59%), Postives = 47/68 (69.12%), Query Frame = 0
Query:  437 KEKVSIAATFYDTKTGETVTTTEASRTHKRRHQINTLAIQAAEREADLLEGKARSMQSKAQTQGKYGW 504
            K+K ++A    ++  G+ +TT  A RT KR+HQIN LA++A ++EA++LE  A   +SK +TQ KYGW
Sbjct:  228 KKKFTLATKLMESDDGQVITTNVARRTQKRKHQINWLAMEAQDKEAEILERTAHMRKSKRETQMKYGW 295          
BLAST of EWM21476.1 vs. NCBI_GenBank
Match: gi|567994257|gb|ETL44418.1| (hypothetical protein L916_05284 [Phytophthora parasitica] >gi|570955811|gb|ETP20898.1| hypothetical protein F441_05478 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 67.3958 bits (163), Expect = 1.550e-8
Identity = 40/136 (29.41%), Postives = 73/136 (53.68%), Query Frame = 0
Query:  382 EVPLSEQGSRRQKQR-LQRELAAGNLSAVSKLGGQVVEVARREESWDPYRYGPP------------KKKEKVSIAATFYDTKTGETVTTTEASRTHKRRHQINTLAIQAAEREADLLEGKARSMQSKAQTQGKYGW 504
            +VP      RR ++R ++R L  G+   V+    Q+ EV    +   P  + PP               +++ + A+F++++ G TV++++ SR  +++HQ+N LA  A  R+ DLLE +  S+++K +T  KYGW
Sbjct:  212 DVPGGSSKRRRTRERDIERALQQGHFETVAD---QITEV----QGPAPNAWQPPVDPLTGASGAKGSSDQEMKLKASFWNSQAGTTVSSSKPSRLQRQKHQLNQLAFDAKARDFDLLEKRGASLKTKRETYAKYGW 340          
BLAST of EWM21476.1 vs. NCBI_GenBank
Match: gi|301097467|ref|XP_002897828.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262106576|gb|EEY64628.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 66.2402 bits (160), Expect = 1.664e-8
Identity = 45/136 (33.09%), Postives = 76/136 (55.88%), Query Frame = 0
Query:  378 EDDFEVPLSEQGSRRQKQR-LQRELAAGNLSAVSKLGGQVVEV-ARREESWDPY---RYGPPKKK----EKVSIAATFYDTKTGETVTTTEASRTHKRRHQINTLAIQAAEREADLLEGKARSMQSKAQTQGKYGW 504
            EDD  VP      RR ++R ++R L  G+   V+    Q+ EV      +W P    R G    K    +++ + A+F++++ G TV++++ SR  ++RHQ+N LA  A  R+ +LLE +  S+++K +T  KYGW
Sbjct:  140 EDD--VPGGSSKRRRTRERDIERALQQGHFETVAD---QIREVQGPVSHAWQPPVDPRTGDRGVKGSSDQEIKVNASFWNSQAGTTVSSSKPSRLQRQRHQLNQLAFDAKVRDFELLEKRGASLKTKRETYAKYGW 270          
BLAST of EWM21476.1 vs. NCBI_GenBank
Match: gi|570990976|gb|ETP48838.1| (hypothetical protein F442_05519 [Phytophthora parasitica P10297])

HSP 1 Score: 67.0106 bits (162), Expect = 1.744e-8
Identity = 40/136 (29.41%), Postives = 73/136 (53.68%), Query Frame = 0
Query:  382 EVPLSEQGSRRQKQR-LQRELAAGNLSAVSKLGGQVVEVARREESWDPYRYGPP------------KKKEKVSIAATFYDTKTGETVTTTEASRTHKRRHQINTLAIQAAEREADLLEGKARSMQSKAQTQGKYGW 504
            +VP      RR ++R ++R L  G+   V+    Q+ EV    +   P  + PP               +++ + A+F++++ G TV++++ SR  +++HQ+N LA  A  R+ DLLE +  S+++K +T  KYGW
Sbjct:  212 DVPGGSSKRRRTRERDIERALQQGHFETVAD---QITEV----QGPAPNAWQPPVDPLTGASGAKGSSDQEMKLKASFWNSQAGTTVSSSKPSRLQRQKHQLNQLAFDAKARDFDLLEKRGASLKTKRETYAKYGW 340          
The following BLAST results are available for this feature:
BLAST of EWM21476.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101706|gb|EWM21476.1|0.000e+0100.00Mitotic checkpoint protein PRCC [Nannochloropsis g... [more]
gi|553196129|ref|XP_005856276.1|2.336e-17299.59hypothetical protein NGA_2119710, partial [Nannoch... [more]
gi|299470045|emb|CBN79222.1|1.957e-1340.83conserved unknown protein [Ectocarpus siliculosus][more]
gi|325190497|emb|CCA24996.1|9.641e-1133.81conserved hypothetical protein [Albugo laibachii N... [more]
gi|635359260|emb|CCI50628.1|2.000e-1037.07unnamed protein product [Albugo candida][more]
gi|1173945976|gb|OQR94552.1|5.347e-1031.72hypothetical protein ACHHYP_01151 [Achlya hypogyna... [more]
gi|697890789|ref|XP_009690636.1|3.109e-945.59conserved hypothetical protein [Theileria oriental... [more]
gi|567994257|gb|ETL44418.1|1.550e-829.41hypothetical protein L916_05284 [Phytophthora para... [more]
gi|301097467|ref|XP_002897828.1|1.664e-833.09conserved hypothetical protein [Phytophthora infes... [more]
gi|570990976|gb|ETP48838.1|1.744e-829.41hypothetical protein F442_05519 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9198rna9198Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications