EWM21521.1, cds9148 (CDS) Nannochloropsis gaditana

Overview
NameEWM21521.1
Unique Namecds9148
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:26305..26367 -
Alignment locationKK037252.1:25884..26204 -
Alignment locationKK037252.1:25694..25759 -
Alignment locationKK037252.1:25381..25521 -
Alignment locationKK037252.1:24180..25220 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21521.1
Productsignal recognition particle 54 kda protein
Orig transcript idgnl|cribi|Naga_100204g2.5773.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:26305..26367 -
KK037252.1supercontigKK037252.1:25884..26204 -
KK037252.1supercontigKK037252.1:25694..25759 -
KK037252.1supercontigKK037252.1:25381..25521 -
KK037252.1supercontigKK037252.1:24180..25220 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003924GTPase activity
GO:00083127S RNA binding
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006614SRP-dependent cotranslational protein targeting to membrane
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0048500signal recognition particle
Vocabulary: INTERPRO
TermDefinition
IPR022941SRP54
IPR004125Signal_recog_particle_SRP54_M
IPR027417P-loop_NTPase
IPR006325SRP54_euk
IPR013822Signal_recog_particl_SRP54_hlx
IPR000897SRP54_GTPase_dom
IPR003593AAA+_ATPase
Homology
BLAST of EWM21521.1 vs. NCBI_GenBank
Match: gi|585101754|gb|EWM21521.1| (signal recognition particle 54 kda protein [Nannochloropsis gaditana])

HSP 1 Score: 1105.89 bits (2859), Expect = 0.000e+0
Identity = 543/543 (100.00%), Postives = 543/543 (100.00%), Query Frame = 0
Query:    1 MVLQELGDKLTGALRRLQTTTVVNDDVLNDLLQDVCRALVESDVNIKVVATLRKGIKEKVNLADAPAGLNRRKMVQRAVMEELVRLVDSGTKPYQMKKGKSNVIMFVGLQGSGKTTTIAKYANYYQRKGWKTCMVCADTFRAGAFDQLKQNATKLRVPFYGSYTEADPVRIAEEGVQQFRSEGYEVIIVDTSGRHKQEEALFEEMKEIQAAVRPDNVVYVMDATQGQAVFDQAQGFHQAAAVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGEHFDDLDVFNPGSFISRLLGLGDMRGFLEEVSSLGAREGGKERQEAMAQRLVKGQFTLRDMYEQFENVMKLGPLSKVMGMLPGFPSFLMGGGEGGRGGQDEAATGRLKRFLTMMDSMTDAELDGKVDLNKSESRVNRIARGSGAHPMEVQFLLKTYAQFSQMFKKMGPMMLKGGEGGIQRQMARNPGGVMNQLSKAVDPRMLQQMGGAKGMMDMMKAMGGGMGGGLADMLQNLGGGGEGEGEEEGVDEEGEGWIQNRCRRRWRKWKI 543
            MVLQELGDKLTGALRRLQTTTVVNDDVLNDLLQDVCRALVESDVNIKVVATLRKGIKEKVNLADAPAGLNRRKMVQRAVMEELVRLVDSGTKPYQMKKGKSNVIMFVGLQGSGKTTTIAKYANYYQRKGWKTCMVCADTFRAGAFDQLKQNATKLRVPFYGSYTEADPVRIAEEGVQQFRSEGYEVIIVDTSGRHKQEEALFEEMKEIQAAVRPDNVVYVMDATQGQAVFDQAQGFHQAAAVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGEHFDDLDVFNPGSFISRLLGLGDMRGFLEEVSSLGAREGGKERQEAMAQRLVKGQFTLRDMYEQFENVMKLGPLSKVMGMLPGFPSFLMGGGEGGRGGQDEAATGRLKRFLTMMDSMTDAELDGKVDLNKSESRVNRIARGSGAHPMEVQFLLKTYAQFSQMFKKMGPMMLKGGEGGIQRQMARNPGGVMNQLSKAVDPRMLQQMGGAKGMMDMMKAMGGGMGGGLADMLQNLGGGGEGEGEEEGVDEEGEGWIQNRCRRRWRKWKI
Sbjct:    1 MVLQELGDKLTGALRRLQTTTVVNDDVLNDLLQDVCRALVESDVNIKVVATLRKGIKEKVNLADAPAGLNRRKMVQRAVMEELVRLVDSGTKPYQMKKGKSNVIMFVGLQGSGKTTTIAKYANYYQRKGWKTCMVCADTFRAGAFDQLKQNATKLRVPFYGSYTEADPVRIAEEGVQQFRSEGYEVIIVDTSGRHKQEEALFEEMKEIQAAVRPDNVVYVMDATQGQAVFDQAQGFHQAAAVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGEHFDDLDVFNPGSFISRLLGLGDMRGFLEEVSSLGAREGGKERQEAMAQRLVKGQFTLRDMYEQFENVMKLGPLSKVMGMLPGFPSFLMGGGEGGRGGQDEAATGRLKRFLTMMDSMTDAELDGKVDLNKSESRVNRIARGSGAHPMEVQFLLKTYAQFSQMFKKMGPMMLKGGEGGIQRQMARNPGGVMNQLSKAVDPRMLQQMGGAKGMMDMMKAMGGGMGGGLADMLQNLGGGGEGEGEEEGVDEEGEGWIQNRCRRRWRKWKI 543          
BLAST of EWM21521.1 vs. NCBI_GenBank
Match: gi|676383251|ref|XP_009034904.1| (hypothetical protein AURANDRAFT_36724 [Aureococcus anophagefferens] >gi|323454201|gb|EGB10071.1| hypothetical protein AURANDRAFT_36724 [Aureococcus anophagefferens])

HSP 1 Score: 683.33 bits (1762), Expect = 0.000e+0
Identity = 332/506 (65.61%), Postives = 404/506 (79.84%), Query Frame = 0
Query:    1 MVLQELGDKLTGALRRLQTTTVVNDDVLNDLLQDVCRALVESDVNIKVVATLRKGIKEKVNLADAPAGLNRRKMVQRAVMEELVRLVDSGTKPYQMKKGKSNVIMFVGLQGSGKTTTIAKYANYYQRKGWKTCMVCADTFRAGAFDQLKQNATKLRVPFYGSYTEADPVRIAEEGVQQFRSEGYEVIIVDTSGRHKQEEALFEEMKEIQAAVRPDNVVYVMDATQGQAVFDQAQGFHQAAAVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGEHFDDLDVFNPGSFISRLLGLGDMRGFLEEVSSLGAREGGKERQEAMAQRLVKGQFTLRDMYEQFENVMKLGPLSKVMGMLPGFPSFLMGGGEGGRGGQDEAATGRLKRFLTMMDSMTDAELDGKVDLNKSESRVNRIARGSGAHPMEVQFLLKTYAQFSQMFKKMGPM-MLKGGEGGIQRQMARNPGGVMNQLSKAVDPRMLQQMGGAKGMMDMMKAMG-----GGMGG 500
            MVLQELG KLT AL ++Q+ TV++++VL+ +L+D+  AL+E+DVN++VV  LRK IK + NL +  AG NRRKM+Q+AV+EEL  ++D G K ++MKKG  NVIMFVGLQG+GKTTTIAK+AN+Y RKG+K CMVCADTFRAGA+DQL+QNATKLR PFYGSYTEADPVRIA+EGV QF++E YEVIIVDTSGRHKQE ALFEEM+EI+AA+ P NV++V+DATQGQAV +QA  FH+A  +GSV++TKLDGHAKGGGALSAVAATGAPI+FLGSGEHFDD + FN  SF+SRLLG+GDMRG +E++        G ++Q  + ++  KGQFTLRDMYEQFENVMKLGPLSKVM M+PG PS  M GGEG     DE +  RLKRF+ MMDSMTD ELD KVDLNKS SR+ R+ARGSG HPMEVQ LLK + QF  +  KMG   ++KGG+  + +QM RNP  VM QL KA+DPRMLQQMGGA+ +M MM+ M      GGM G
Sbjct:    1 MVLQELGSKLTAALHKMQSVTVISEEVLDKMLKDIAAALLEADVNVRVVMELRKAIKTRANLEEESAGTNRRKMIQKAVVEELAGMLDPGVKAHEMKKGSPNVIMFVGLQGAGKTTTIAKFANHYLRKGFKCCMVCADTFRAGAYDQLRQNATKLRCPFYGSYTEADPVRIAQEGVDQFKAEKYEVIIVDTSGRHKQETALFEEMQEIRAAIEPQNVIFVLDATQGQAVHEQASSFHEAIDIGSVVITKLDGHAKGGGALSAVAATGAPILFLGSGEHFDDFEPFNAHSFVSRLLGMGDMRGLVEQIKD----TIGDDKQPELMEKFSKGQFTLRDMYEQFENVMKLGPLSKVMAMIPGIPS--MMGGEG-----DE-SNNRLKRFMYMMDSMTDDELDAKVDLNKSASRIERVARGSGCHPMEVQMLLKCHKQFESVVSKMGKSGLMKGGDAAMAKQMQRNPNQVMQQLHKAMDPRMLQQMGGAQNLMSMMQEMSKLEGEGGMKG 494          
BLAST of EWM21521.1 vs. NCBI_GenBank
Match: gi|301120250|ref|XP_002907852.1| (signal recognition particle, putative [Phytophthora infestans T30-4] >gi|262102883|gb|EEY60935.1| signal recognition particle, putative [Phytophthora infestans T30-4])

HSP 1 Score: 652.129 bits (1681), Expect = 0.000e+0
Identity = 322/519 (62.04%), Postives = 404/519 (77.84%), Query Frame = 0
Query:    1 MVLQELGDKLTGALRRLQTTTVVNDDVLNDLLQDVCRALVESDVNIKVVATLRKGIKEKVNLADAPAGLNRRKMVQRAVMEELVRLVDSGTKPYQMKKGKSNVIMFVGLQGSGKTTTIAKYANYYQRKGWKTCMVCADTFRAGAFDQLKQNATKLRVPFYGSYTEADPVRIAEEGVQQFRSEGYEVIIVDTSGRHKQEEALFEEMKEIQAAVRPDNVVYVMDATQGQAVFDQAQGFHQAAAVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGEHFDDLDVFNPGSFISRLLGLGDMRGFLEEVSSLGAREGGKERQEAMAQRLVKGQFTLRDMYEQFENVMKLGPLSKVMGMLPGFPSFL-----MGGGEGGRGGQDEAATGRLKRFLTMMDSMTDAELDGKVDLNKSESRVNRIARGSGAHPMEVQFLLKTYAQFSQMFKKMGPM-MLKGGEGGIQRQMARNPGGVMNQLSKAVDPRMLQQMGGAKGMMDMMKAMGG---GMGGGLADMLQNLG 510
            MVL ELG KL GAL +L  TTVV+D+V N LL+++C AL+ESDV +K+V  LR  +K  VNL DA +G+NRR+++Q++V++++V++++   +PY+MKKG+SNVIMFVGLQGSGKTT+IAK+A++YQRKGWKTCMVCADTFRAGAFDQLKQN+TKLR+PFYGSYTEADPVRIAEEGV QFR+E YE+I+VDTSGRHKQE  LF EM+E+ AAV+PD+VV+VMD+T GQAVFDQA  F +   VGSVI+TKLDGHAKGGGALSAVAATG+PIIF G+GEHF D + FN  SF+SRL+G+GD+RG +EEV +     G  + QE M ++  KG FTLRDMY+QF++VMK+GPLSKVM M+PG P  +     MGGGE       E A+ RL+RFL MMDSMTDAELDG V L  SESR  R+ARGSG    EV+FLLK + QF+ +  +MG   ++K G+  + +QMARNP  VM QLSK +DP+M+ QMGG + MM MMK M G      G +A M QN+G
Sbjct:    1 MVLAELGSKLQGALAKLNRTTVVDDEVFNALLKEICGALLESDVQVKLVRQLRDNVKLAVNLEDASSGVNRRRLIQKSVVDQIVQMLEPEAQPYKMKKGQSNVIMFVGLQGSGKTTSIAKFAHFYQRKGWKTCMVCADTFRAGAFDQLKQNSTKLRIPFYGSYTEADPVRIAEEGVAQFRAENYELILVDTSGRHKQETDLFAEMREVSAAVQPDDVVFVMDSTIGQAVFDQASAFRETVDVGSVIITKLDGHAKGGGALSAVAATGSPIIFYGTGEHFADFESFNAQSFVSRLMGMGDIRGLMEEVKT----SGMLDNQEEMVEKFQKGVFTLRDMYKQFQSVMKMGPLSKVMSMIPGLPQGMSEMMNMGGGE-------EEASKRLRRFLFMMDSMTDAELDGAVPL--SESRQTRVARGSGCQLYEVEFLLKCHKQFATVVSRMGKSGLMKTGDAALGKQMARNPNAVMQQLSKVMDPKMMAQMGGPQNMMRMMKQMQGMDPSALGDMAKMAQNMG 506          
BLAST of EWM21521.1 vs. NCBI_GenBank
Match: gi|675168337|ref|XP_008893053.1| (signal recognition particle protein SRP54 [Phytophthora parasitica INRA-310] >gi|566022526|gb|ETI45437.1| signal recognition particle protein SRP54 [Phytophthora parasitica P1569] >gi|567959818|gb|ETK85382.1| signal recognition particle protein SRP54 [Phytophthora parasitica] >gi|567988533|gb|ETL38809.1| signal recognition particle protein SRP54 [Phytophthora parasitica] >gi|568017756|gb|ETL91933.1| signal recognition particle protein SRP54 [Phytophthora parasitica] >gi|568048164|gb|ETM45226.1| signal recognition particle protein SRP54 [Phytophthora parasitica] >gi|568106608|gb|ETN21238.1| signal recognition particle protein SRP54 [Phytophthora parasitica INRA-310] >gi|570326126|gb|ETO74074.1| signal recognition particle protein SRP54 [Phytophthora parasitica P1976] >gi|570949981|gb|ETP15238.1| signal recognition particle protein SRP54 [Phytophthora parasitica CJ01A1] >gi|570983543|gb|ETP43353.1| signal recognition particle protein SRP54 [Phytophthora parasitica P10297])

HSP 1 Score: 647.892 bits (1670), Expect = 0.000e+0
Identity = 318/511 (62.23%), Postives = 399/511 (78.08%), Query Frame = 0
Query:    1 MVLQELGDKLTGALRRLQTTTVVNDDVLNDLLQDVCRALVESDVNIKVVATLRKGIKEKVNLADAPAGLNRRKMVQRAVMEELVRLVDSGTKPYQMKKGKSNVIMFVGLQGSGKTTTIAKYANYYQRKGWKTCMVCADTFRAGAFDQLKQNATKLRVPFYGSYTEADPVRIAEEGVQQFRSEGYEVIIVDTSGRHKQEEALFEEMKEIQAAVRPDNVVYVMDATQGQAVFDQAQGFHQAAAVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGEHFDDLDVFNPGSFISRLLGLGDMRGFLEEVSSLGAREGGKERQEAMAQRLVKGQFTLRDMYEQFENVMKLGPLSKVMGMLPGFPSFL-----MGGGEGGRGGQDEAATGRLKRFLTMMDSMTDAELDGKVDLNKSESRVNRIARGSGAHPMEVQFLLKTYAQFSQMFKKMGPM-MLKGGEGGIQRQMARNPGGVMNQLSKAVDPRMLQQMGGAKGMMDMMKAMGGGMGGGLADM 505
            MVL ELG KL GAL +L  TTVV+D+V N LL+++C AL+ESDV +K+V  LR  +K  VNL DA +G+NRR+++Q++V+++LV++++   +PY+MKKG+SNVIMFVGLQGSGKTT+IAK+A++YQRKGWKTCMVCADTFRAGAFDQLKQN+TKLR+PFYGSYTEADPVRIAEEGV QFR+E YE+I+VDTSGRHKQE  LF EM+E+ AAV+PD+VV+VMD+T GQAV+DQA  F +   VGSVI+TKLDGHAKGGGALSAVAATG+PIIF G+GEHF D + FN  SF+SRL+G+GD+RG +EEV +     G  + QE M ++  KG FTLRDMY+QF++VMK+GPLSKVM M+PG P  +     MGGGE       E A+ RL+RFL MMDSMTDAELDG V L  SESR  R+ARGSG    EV+FLLK + QF+ +  +MG   ++K G+  + +QM+RNP  VM QLSK +DP+M+ QMGG + MM MMK M G     L DM
Sbjct:    1 MVLAELGSKLQGALAKLNRTTVVDDEVFNALLKEICGALLESDVQVKLVRQLRDNVKLAVNLEDASSGVNRRRLIQKSVVDQLVQMLEPEAQPYKMKKGQSNVIMFVGLQGSGKTTSIAKFAHFYQRKGWKTCMVCADTFRAGAFDQLKQNSTKLRIPFYGSYTEADPVRIAEEGVAQFRAENYELILVDTSGRHKQEADLFAEMREVSAAVQPDDVVFVMDSTIGQAVYDQASAFRETVDVGSVIITKLDGHAKGGGALSAVAATGSPIIFYGTGEHFADFESFNAQSFVSRLMGMGDIRGLMEEVKT----SGMLDNQEEMVEKFQKGVFTLRDMYKQFQSVMKMGPLSKVMSMIPGLPQGMSEMMNMGGGE-------EEASKRLRRFLFMMDSMTDAELDGIVPL--SESRQTRVARGSGCQLYEVEFLLKCHKQFATVVSRMGKSGLMKTGDAALGKQMSRNPNAVMQQLSKVMDPKMMAQMGGPQNMMRMMKQMQGMDPSALGDM 498          
BLAST of EWM21521.1 vs. NCBI_GenBank
Match: gi|970655411|gb|KUF93578.1| (Drug/Metabolite Transporter (DMT) Superfamily [Phytophthora nicotianae])

HSP 1 Score: 645.58 bits (1664), Expect = 0.000e+0
Identity = 315/502 (62.75%), Postives = 396/502 (78.88%), Query Frame = 0
Query:    1 MVLQELGDKLTGALRRLQTTTVVNDDVLNDLLQDVCRALVESDVNIKVVATLRKGIKEKVNLADAPAGLNRRKMVQRAVMEELVRLVDSGTKPYQMKKGKSNVIMFVGLQGSGKTTTIAKYANYYQRKGWKTCMVCADTFRAGAFDQLKQNATKLRVPFYGSYTEADPVRIAEEGVQQFRSEGYEVIIVDTSGRHKQEEALFEEMKEIQAAVRPDNVVYVMDATQGQAVFDQAQGFHQAAAVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGEHFDDLDVFNPGSFISRLLGLGDMRGFLEEVSSLGAREGGKERQEAMAQRLVKGQFTLRDMYEQFENVMKLGPLSKVMGMLPGFPSFL-----MGGGEGGRGGQDEAATGRLKRFLTMMDSMTDAELDGKVDLNKSESRVNRIARGSGAHPMEVQFLLKTYAQFSQMFKKMGPM-MLKGGEGGIQRQMARNPGGVMNQLSKAVDPRMLQQMGGAKGMMDMMKAMGG 496
            MVL ELG KL GAL +L  TTVV+D+V N LL+++C AL+ESDV +K+V  LR  +K  VNL DA +G+NRR+++Q++V+++LV++++   +PY+MKKG+SNVIMFVGLQGSGKTT+IAK+A++YQRKGWKTCMVCADTFRAGAFDQLKQN+TKLR+PFYGSYTEADPVRIAEEGV QFR+E YE+I+VDTSGRHKQE  LF EM+E+ AAV+PD+VV+VMD+T GQAV+DQA  F +   VGSVI+TKLDGHAKGGGALSAVAATG+PIIF G+GEHF D + FN  SF+SRL+G+GD+RG +EEV +     G  + QE M ++  KG FTLRDMY+QF++VMK+GPLSKVM M+PG P  +     MGGGE       E A+ RL+RFL MMDSMTDAELDG V L  SESR  R+ARGSG    EV+FLLK + QF+ +  +MG   ++K G+  + +QM+RNP  VM QLSK +DP+M+ QMGG + MM MMK M G
Sbjct:    1 MVLAELGSKLQGALAKLNRTTVVDDEVFNALLKEICGALLESDVQVKLVRQLRDNVKLAVNLEDASSGVNRRRLIQKSVVDQLVQMLEPEAQPYKMKKGQSNVIMFVGLQGSGKTTSIAKFAHFYQRKGWKTCMVCADTFRAGAFDQLKQNSTKLRIPFYGSYTEADPVRIAEEGVAQFRAENYELILVDTSGRHKQEADLFAEMREVSAAVQPDDVVFVMDSTIGQAVYDQASAFRETVDVGSVIITKLDGHAKGGGALSAVAATGSPIIFYGTGEHFADFESFNAQSFVSRLMGMGDIRGLMEEVKT----SGMLDNQEEMVEKFQKGVFTLRDMYKQFQSVMKMGPLSKVMSMIPGLPQGMSEMMNMGGGE-------EEASKRLRRFLFMMDSMTDAELDGIVPL--SESRQTRVARGSGCQLYEVEFLLKCHKQFATVVSRMGKSGLMKTGDAALGKQMSRNPNAVMQQLSKVMDPKMMAQMGGPQNMMRMMKQMQG 489          
BLAST of EWM21521.1 vs. NCBI_GenBank
Match: gi|695414655|ref|XP_009526361.1| (hypothetical protein PHYSODRAFT_360478 [Phytophthora sojae] >gi|348677486|gb|EGZ17303.1| hypothetical protein PHYSODRAFT_360478 [Phytophthora sojae])

HSP 1 Score: 645.195 bits (1663), Expect = 0.000e+0
Identity = 318/511 (62.23%), Postives = 399/511 (78.08%), Query Frame = 0
Query:    1 MVLQELGDKLTGALRRLQTTTVVNDDVLNDLLQDVCRALVESDVNIKVVATLRKGIKEKVNLADAPAGLNRRKMVQRAVMEELVRLVDSGTKPYQMKKGKSNVIMFVGLQGSGKTTTIAKYANYYQRKGWKTCMVCADTFRAGAFDQLKQNATKLRVPFYGSYTEADPVRIAEEGVQQFRSEGYEVIIVDTSGRHKQEEALFEEMKEIQAAVRPDNVVYVMDATQGQAVFDQAQGFHQAAAVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGEHFDDLDVFNPGSFISRLLGLGDMRGFLEEVSSLGAREGGKERQEAMAQRLVKGQFTLRDMYEQFENVMKLGPLSKVMGMLPGFPSFL-----MGGGEGGRGGQDEAATGRLKRFLTMMDSMTDAELDGKVDLNKSESRVNRIARGSGAHPMEVQFLLKTYAQFSQMFKKMGPM-MLKGGEGGIQRQMARNPGGVMNQLSKAVDPRMLQQMGGAKGMMDMMKAMGGGMGGGLADM 505
            MVL ELG KL GAL +L  TTVV+D+V + LL+++C AL+ESDV +K+V  LR  +K  V+L DA +G+NRR+++Q++V+++LV++++   +PY+MKKG+SNVIMFVGLQGSGKTT+IAK+A++YQRKGWKTCMVCADTFRAGAFDQLKQN+TKLR+PFYGSYTEADPVRIAEEGV QFR+E YE+I+VDTSGRHKQE  LF EM+E+ AAV+PD+VV+VMD+T GQAVFDQA  F +   VGSVI+TKLDGHAKGGGALSAVAATG+PIIF G+GEHF D + FN  SF+SRL+G+GD+RG +EEV +     G  + QE M ++  KG FTLRDMY+QF++VMK+GPLSKVM M+PG P  +     MGGGE       E A+ RL+RFL MMDSMTDAELDG V L  SESR  R+ARGSG    EV+FLLK + QF+ +  +MG   ++K G+  + +QMARNP  VM QLSK +DP+M+ QMGG + MM MMK M G     L DM
Sbjct:    1 MVLAELGSKLQGALAKLNRTTVVDDEVFSALLKEICGALLESDVQVKLVRQLRDNVKLAVSLEDASSGVNRRRLIQKSVVDQLVQMLEPEAQPYKMKKGQSNVIMFVGLQGSGKTTSIAKFAHHYQRKGWKTCMVCADTFRAGAFDQLKQNSTKLRIPFYGSYTEADPVRIAEEGVAQFRAENYELILVDTSGRHKQEADLFAEMREVSAAVQPDDVVFVMDSTIGQAVFDQASAFRETVDVGSVIITKLDGHAKGGGALSAVAATGSPIIFYGTGEHFADFESFNAQSFVSRLMGMGDIRGLMEEVKT----SGMLDNQEEMVEKFQKGVFTLRDMYKQFQSVMKMGPLSKVMSMIPGLPQGMSEMMNMGGGE-------EEASKRLRRFLFMMDSMTDAELDGIVPL--SESRQTRVARGSGCQLYEVEFLLKCHKQFATVVSRMGKSGLMKTGDAALGKQMARNPNAVMQQLSKVMDPKMMAQMGGPQNMMRMMKQMQGMDPSALGDM 498          
BLAST of EWM21521.1 vs. NCBI_GenBank
Match: gi|953499994|emb|CEG38635.1| (signal recognition particle protein srp54 [Plasmopara halstedii])

HSP 1 Score: 626.706 bits (1615), Expect = 0.000e+0
Identity = 309/514 (60.12%), Postives = 393/514 (76.46%), Query Frame = 0
Query:    1 MVLQELGDKLTGALRRLQTTTVVNDDVLNDLLQDVCRALVESDVNIKVVATLRKGIKEKVNLADAPAGLNRRKMVQRAVMEELVRLVDSGTKPYQMKKGKSNVIMFVGLQGSGKTTTIAKYANYYQRKGWKTCMVCADTFRAGAFDQLKQNATKLRVPFYGSYTEADPVRIAEEGVQQFRSEGYEVIIVDTSGRHKQEEALFEEMKEIQAAVRPDNVVYVMDATQGQAVFDQAQGFHQAAAVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGEHFDDLDVFNPGSFISRLLGLGDMRGFLEEVSSLGAREGGKERQEAMAQRLVKGQFTLRDMYEQFENVMKLGPLSKVMGMLPGFPSFLMGGGEGGRGGQDEAATGRLKRFLTMMDSMTDAELDGKVDLNKSESRVNRIARGSGAHPMEVQFLLKTYAQFSQMFKKMGPM-MLKGGEGGIQRQMARNPGGVMNQLSKAVDPRMLQQMGGAKGMMDMMKAMGGGMGGGLADMLQNLGGGG 513
            MVL ELG KL GAL +L  T VV+D+V N LL+++C AL+ESDV +K+V  LR  +K  V L D  +G+NRR+++Q+AV+++LV++++    PY+MKKG+SNVIMFVGLQGSGKTT+IAK A+YYQRKGWKTCMVCADTFRAGAFDQLKQN+TKLR+PFYGSYTEADPVRIAEEGV QFR+E YE+I+VDTSGRHKQE  LF EM+E+ AAV+PD+VV+VMD+T GQAV+DQA+ F     VGSVI+TKLDGHAKGGGALSAVAATG+PIIF G+GEHF D + FN  SF+SRL+G+GD+RG +EEV +     G  + +E + ++  KG FTLRDMY+QF++VMK+GPL KVM M+PG P  L        GG +E A+ RL+RFL MMDSMTDAELDG V L  S+SR  R+ARGSG   +EV FLLK + QF+ +  ++G   ++K G+    +QMARNP  VM QLSK +DP+++ Q+GG + MM ++K M G     L DM +   G G
Sbjct:    1 MVLSELGSKLQGALAKLNRTIVVDDEVFNVLLKEICGALLESDVQVKLVRQLRDNVKLAVKLEDTSSGINRRRLIQKAVVDQLVQMLEPEAPPYKMKKGQSNVIMFVGLQGSGKTTSIAKLAHYYQRKGWKTCMVCADTFRAGAFDQLKQNSTKLRIPFYGSYTEADPVRIAEEGVAQFRAENYELILVDTSGRHKQETDLFAEMREVSAAVQPDDVVFVMDSTIGQAVYDQARAFRDTVNVGSVIITKLDGHAKGGGALSAVAATGSPIIFYGTGEHFADFEAFNAESFVSRLMGMGDIRGLMEEVKT----SGMFDNEEEIVEKFQKGVFTLRDMYKQFQSVMKMGPLGKVMSMIPGLPQGL--SDMMNSGGGEEEASKRLRRFLFMMDSMTDAELDGLVPL--SDSRKARVARGSGCQLVEVDFLLKCHKQFANVVSRVGKSGLMKSGDAAFGKQMARNPNAVMQQLSKVMDPKLMAQIGGPQTMMQVLKQMQGMDNNALGDMAKMAQGMG 506          
BLAST of EWM21521.1 vs. NCBI_GenBank
Match: gi|1173959798|gb|OQS05992.1| (signal recognition particle [Thraustotheca clavata])

HSP 1 Score: 610.912 bits (1574), Expect = 0.000e+0
Identity = 305/484 (63.02%), Postives = 374/484 (77.27%), Query Frame = 0
Query:    1 MVLQELGDKLTGALRRLQTTTVVNDDVLNDLLQDVCRALVESDVNIKVVATLRKGIKEKVNLADAPAGLNRRKMVQRAVMEELVRLVDSGTKPYQMKKGKSNVIMFVGLQGSGKTTTIAKYANYYQRKGWKTCMVCADTFRAGAFDQLKQNATKLRVPFYGSYTEADPVRIAEEGVQQFRSEGYEVIIVDTSGRHKQEEALFEEMKEIQAAVRPDNVVYVMDATQGQAVFDQAQGFHQAAAVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGEHFDDLDVFNPGSFISRLLGLGDMRGFLEEVSSLGAREGGKERQEAMAQRLVKGQFTLRDMYEQFENVMKLGPLSKVMGMLPGFPSFLMGGGEGGRGGQDEAATGRLKRFLTMMDSMTDAELDGKVDLNKSESRVNRIARGSGAHPMEVQFLLKTYAQFSQMFKKMGPM-MLKGGEGGIQRQMARNPGGVMNQLSKAVDPRMLQQMGG 483
            MVL ELG ++  AL RL + T V+D+VLN +L+++C AL+ESDVN+++V  LR  +K+ ++ AD   G NRR+M+ +AVM+ LV +++  TKPY+MKKG+SNV+MFVGLQGSGKTTTIAKYA+YYQRKGWKTCMVCADTFRAGAFDQLKQNATKLRVPFYGSYTEADPVRIA+EGV QFR+E YE+IIVDTSGRHKQE  LF EM+E+   V+PD+VV+VMD+T GQAV DQA  F  A  VGSVI+TKLDGHAKGGGA+SAVAAT A I F G+GEHF D + FN  SF+SRLLG+GDM+G +EEV S     G  + QE M ++  KG FTLRDMY QF+ VMK+GPLSKVM M+PG    L   G   +GG +E  T  LKRFL MMDSMT AELDG V L  + SR  R+A+GSG  P EV+FLLK + QF+ + ++MG   ++KGG+  + +QM RNP  VM QLSKA+DPRM+ QMGG
Sbjct:    1 MVLAELGGRIQAALGRLNSATTVDDEVLNLILKEICGALLESDVNVRLVQQLRGRVKQVMD-ADEAVGANRRRMIHKAVMDALVSMLEPQTKPYKMKKGQSNVVMFVGLQGSGKTTTIAKYAHYYQRKGWKTCMVCADTFRAGAFDQLKQNATKLRVPFYGSYTEADPVRIAQEGVAQFRAEHYEIIIVDTSGRHKQEADLFAEMQEVYDVVQPDDVVFVMDSTIGQAVHDQATAFKDAVPVGSVIITKLDGHAKGGGAMSAVAATNAAITFYGTGEHFSDFEAFNASSFVSRLLGMGDMKGLMEEVKS----SGMLDNQEEMVKKFQKGVFTLRDMYNQFQTVMKMGPLSKVMEMIPGMSGML---GNMLKGGGEEGGTRILKRFLYMMDSMTAAELDGVVQL--TPSRQLRVAKGSGCKPAEVEFLLKMHKQFAGVVQRMGKSGLMKGGDAAMAKQMERNPNAVMQQLSKAMDPRMMAQMGG 474          
BLAST of EWM21521.1 vs. NCBI_GenBank
Match: gi|635361577|emb|CCI49496.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 607.446 bits (1565), Expect = 0.000e+0
Identity = 304/517 (58.80%), Postives = 391/517 (75.63%), Query Frame = 0
Query:    1 MVLQELGDKLTGALRRLQTTTVVNDDVLNDLLQDVCRALVESDVNIKVVATLRKGIKEKVNLADAPAGLNRRKMVQRAVMEELVRLVDSGTKPYQMKKGKSNVIMFVGLQGSGKTTTIAKYANYYQRKGWKTCMVCADTFRAGAFDQLKQNATKLRVPFYGSYTEADPVRIAEEGVQQFRSEGYEVIIVDTSGRHKQEEALFEEMKEIQAAVRPDNVVYVMDATQGQAVFDQAQGFHQAAAVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGEHFDDLDVFNPGSFISRLLGLGDMRGFLEEVSSLGAREGGKERQEAMAQRLVKGQFTLRDMYEQFENVMKLGPLSKVMGMLPGFPSFL-----MGGGEGGRGGQDEAATGRLKRFLTMMDSMTDAELDGKVDLNKSESRVNRIARGSGAHPMEVQFLLKTYAQFSQMFKKMGPM-MLKGGEGGIQRQMARNPGGVMNQLSKAVDPRMLQQMGGAKGMMDMMKAMGGGMGGGLADMLQNLGG 511
            MVL++LG KL  AL  L TTT+V+DDVLN++L+D+C AL+ESDV +++V  +R  ++  V   ++ AG+NRR+++Q+AV+++L++++ S  KP+++KKG  N +MFVGLQGSGKTT+IAKYA+YYQRKGWKTCMVCADTFRAGAFDQLKQNATKLR+PFYGSYTEADPVRIAE+GV QFR++ YE+I+VDTSGRHKQE  LF EMK++ AAVRPD+VV+VMD+T GQAV DQA  F Q+  VGSVI+TKLDGHAKGGGALSAVAATG+PIIF G+GEHF + + F+   F+SR++G+GD+RG +EEV   G  E  KE       +L KG +T RD+Y+Q + VMKLGPLSKVM M+PG P  +     MGGGE       E  + RL+RFL MMDSMTDAELDG+V +N   SR  RIA+GSG    EV +LLK + QF+ +  +MG   ++K G+   ++Q+ARNP  VM QLSK +DPRML QMGG + MM M+K M G     + +M  N GG
Sbjct:    1 MVLEQLGSKLQSALATLNTTTIVDDDVLNNILKDICAALLESDVQVQLVRQIRDNVRLTVAAHESAAGVNRRRLIQKAVLDQLIQILQSKKKPFKLKKGGCNTVMFVGLQGSGKTTSIAKYAHYYQRKGWKTCMVCADTFRAGAFDQLKQNATKLRIPFYGSYTEADPVRIAEQGVAQFRADHYELILVDTSGRHKQETDLFAEMKQVAAAVRPDDVVFVMDSTIGQAVHDQASAFVQSVDVGSVIITKLDGHAKGGGALSAVAATGSPIIFYGTGEHFSEFETFDAQRFVSRMMGMGDIRGLMEEVKQSGMFEDDKE----FMAKLNKGSYTFRDLYKQLQGVMKLGPLSKVMSMIPGLPPGMNQMMNMGGGE-------EEGSKRLRRFLFMMDSMTDAELDGQVPIN--PSRQLRIAKGSGCGLFEVDYLLKCHKQFASVISRMGKSGLMKTGDANFEKQLARNPNAVMQQLSKVMDPRMLAQMGGPQNMMRMLKQMQGMDTNSMNEMAANFGG 504          
BLAST of EWM21521.1 vs. NCBI_GenBank
Match: gi|325180969|emb|CCA15378.1| (signal recognition particle putative [Albugo laibachii Nc14])

HSP 1 Score: 604.749 bits (1558), Expect = 0.000e+0
Identity = 300/517 (58.03%), Postives = 394/517 (76.21%), Query Frame = 0
Query:    1 MVLQELGDKLTGALRRLQTTTVVNDDVLNDLLQDVCRALVESDVNIKVVATLRKGIKEKVNLADAPAGLNRRKMVQRAVMEELVRLVDSGTKPYQMKKGKSNVIMFVGLQGSGKTTTIAKYANYYQRKGWKTCMVCADTFRAGAFDQLKQNATKLRVPFYGSYTEADPVRIAEEGVQQFRSEGYEVIIVDTSGRHKQEEALFEEMKEIQAAVRPDNVVYVMDATQGQAVFDQAQGFHQAAAVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGEHFDDLDVFNPGSFISRLLGLGDMRGFLEEVSSLGAREGGKERQEAMAQRLVKGQFTLRDMYEQFENVMKLGPLSKVMGMLPGFPSFL-----MGGGEGGRGGQDEAATGRLKRFLTMMDSMTDAELDGKVDLNKSESRVNRIARGSGAHPMEVQFLLKTYAQFSQMFKKMGPM-MLKGGEGGIQRQMARNPGGVMNQLSKAVDPRMLQQMGGAKGMMDMMKAMGGGMGGGLADMLQNLGG 511
            MVL++LG KL  AL  L TTT+V+D+VLN++++DVC AL+ESDV +++V  +R  ++  V   ++ AG+NRR+++Q+AV+++L++++ S  KP+++KKG  N +MFVGLQGSGKTT+IAKYA+YYQRKGWKTCMVCADTFRAGAFDQLKQNATKLR+PFYGSYTEADPVRIAE+GV QFR++ YE+I+VDTSGRHKQE  LF EMK++ AAVRPD+VV+VMD+T GQAV+DQ+  F Q+  VGSVI+TKLDGHAKGGGALSAVAATG+PIIF G+GEHF +L+ F+   F+SR++G+GD+RG +EEV   G  +  KE    +  +  KG +TLRD+Y+Q + VMK+GPLSKVM M+PG P  +     MGGGE       E  + RL+RFL MMDSMTDAELDG+V +N   SR  RIA+GSG    EV +LLK + QF+ +  +MG   ++K G+ G ++Q+ARNP  VM QLSK +D R+L QMGG + MM M+K M G     + +M  N GG
Sbjct:    1 MVLEQLGSKLQSALAALNTTTIVDDEVLNNIMKDVCAALLESDVQVQLVRQIRDNVRLTVAAHESAAGVNRRRLIQKAVLDQLIQILQSKKKPFKLKKGSCNTVMFVGLQGSGKTTSIAKYAHYYQRKGWKTCMVCADTFRAGAFDQLKQNATKLRIPFYGSYTEADPVRIAEQGVAQFRADHYELILVDTSGRHKQETDLFAEMKQVAAAVRPDDVVFVMDSTIGQAVYDQSSAFVQSVDVGSVIITKLDGHAKGGGALSAVAATGSPIIFYGTGEHFSELETFDAQRFVSRMMGMGDIRGLMEEVKQSGIFDDEKE----LMSKFQKGSYTLRDLYKQLQGVMKMGPLSKVMSMIPGLPPGMNQMMNMGGGE-------EEGSKRLRRFLFMMDSMTDAELDGQVPINP--SRQIRIAKGSGCGLFEVDYLLKCHKQFATVISRMGKSGLMKTGDAGFEKQLARNPNAVMQQLSKVMDSRVLAQMGGPQNMMRMLKQMQGMDSNSMNEMAANFGG 504          
The following BLAST results are available for this feature:
BLAST of EWM21521.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101754|gb|EWM21521.1|0.000e+0100.00signal recognition particle 54 kda protein [Nannoc... [more]
gi|676383251|ref|XP_009034904.1|0.000e+065.61hypothetical protein AURANDRAFT_36724 [Aureococcus... [more]
gi|301120250|ref|XP_002907852.1|0.000e+062.04signal recognition particle, putative [Phytophthor... [more]
gi|675168337|ref|XP_008893053.1|0.000e+062.23signal recognition particle protein SRP54 [Phytoph... [more]
gi|970655411|gb|KUF93578.1|0.000e+062.75Drug/Metabolite Transporter (DMT) Superfamily [Phy... [more]
gi|695414655|ref|XP_009526361.1|0.000e+062.23hypothetical protein PHYSODRAFT_360478 [Phytophtho... [more]
gi|953499994|emb|CEG38635.1|0.000e+060.12signal recognition particle protein srp54 [Plasmop... [more]
gi|1173959798|gb|OQS05992.1|0.000e+063.02signal recognition particle [Thraustotheca clavata... [more]
gi|635361577|emb|CCI49496.1|0.000e+058.80unnamed protein product [Albugo candida][more]
gi|325180969|emb|CCA15378.1|0.000e+058.03signal recognition particle putative [Albugo laiba... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9178rna9178Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications