EWM21556.1, cds9118 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21556.1 vs. NCBI_GenBank
Match: gi|585101807|gb|EWM21556.1| (hypothetical protein Naga_101135g2 [Nannochloropsis gaditana]) HSP 1 Score: 299.286 bits (765), Expect = 7.911e-103 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
Query: 1 MHRRRAARAAALVLCLLAVICDLPGAWGKEGKNRPMFYDGGAWHDLDEDPRPGEPLPYPPDSDSWQRPDTTVHVQISSFRDHRCPKTLYNLFTKAKFPGRVRVGVVQQNEKDDVGAQGGRACVAAWNLAHASPPPQTVSIRTAA 144
MHRRRAARAAALVLCLLAVICDLPGAWGKEGKNRPMFYDGGAWHDLDEDPRPGEPLPYPPDSDSWQRPDTTVHVQISSFRDHRCPKTLYNLFTKAKFPGRVRVGVVQQNEKDDVGAQGGRACVAAWNLAHASPPPQTVSIRTAA
Sbjct: 1 MHRRRAARAAALVLCLLAVICDLPGAWGKEGKNRPMFYDGGAWHDLDEDPRPGEPLPYPPDSDSWQRPDTTVHVQISSFRDHRCPKTLYNLFTKAKFPGRVRVGVVQQNEKDDVGAQGGRACVAAWNLAHASPPPQTVSIRTAA 144
BLAST of EWM21556.1 vs. NCBI_GenBank
Match: gi|553189802|ref|XP_005855077.1| (hypothetical protein NGA_0407000, partial [Nannochloropsis gaditana CCMP526] >gi|422293984|gb|EKU21284.1| hypothetical protein NGA_0407000, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 174.096 bits (440), Expect = 3.539e-54 Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0
Query: 1 MHRRRAARAAALVLCLLAVICDLPGAWGKEGKNRPMFYDGGAWHDLDEDPRPGEPLPYPPDSDSWQRPDTTVHVQISSFRDH 82
MHRRRAARAAALVLCLLAVICDLPGAWGKEGKNRPMFYDGGAWHDLDEDPRPGEPLPYPPDSDSWQRPDTTVHVQISSFRDH
Sbjct: 1 MHRRRAARAAALVLCLLAVICDLPGAWGKEGKNRPMFYDGGAWHDLDEDPRPGEPLPYPPDSDSWQRPDTTVHVQISSFRDH 82
BLAST of EWM21556.1 vs. NCBI_GenBank
Match: gi|585109966|gb|EWM27694.1| (ac transferase [Nannochloropsis gaditana]) HSP 1 Score: 98.9821 bits (245), Expect = 2.064e-21 Identity = 49/90 (54.44%), Postives = 56/90 (62.22%), Query Frame = 0
Query: 30 EGKNRPMF-----YDGGAWHDLDEDPRPGEPLPYPPDSDSWQRPDTTVHVQISSFRDHRCPKTLYNLFTKAKFPGRVRVGVVQQNEKDDV 114
E +N F + G W DE+ G P PYPP +DSW DT++ V ISSFRD+RCPKTLYNLFTKA P RV GVVQQN DV
Sbjct: 37 EAQNENSFGKAAVFMNGRWTQFDENDDAGVPQPYPPKTDSWTLNDTSIMVSISSFRDYRCPKTLYNLFTKAANPDRVYAGVVQQNNAGDV 126
BLAST of EWM21556.1 vs. NCBI_GenBank
Match: gi|298712439|emb|CBJ33215.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 91.2781 bits (225), Expect = 9.805e-19 Identity = 47/85 (55.29%), Postives = 57/85 (67.06%), Query Frame = 0
Query: 33 NRPMFYDGGAWHDL---DEDPRPGEPLPYPPDSDSWQRPDTTVHVQISSFRDHRCPKTLYNLFTKAKFPGRVRVGVVQQNEKDDV 114
N M +DG W L DE PRP PP + SW+R DT+V V +SSFRD RCP+TL N F+KAK+P RV VGVVQQN+ +DV
Sbjct: 98 NGAMVWDGNGWIALWDDDEAPRPP-----PPKTSSWKRSDTSVFVGVSSFRDKRCPQTLVNFFSKAKYPERVTVGVVQQNDHEDV 177
BLAST of EWM21556.1 vs. NCBI_GenBank
Match: gi|298708476|emb|CBJ30600.1| ([Skp1-protein]-hydroxyproline N-acetylglucosaminyltransferase, family GT60 [Ectocarpus siliculosus]) HSP 1 Score: 79.337 bits (194), Expect = 1.612e-14 Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 0
Query: 55 PLPYPPDSDSWQRPDTTVHVQISSFRDHRCPKTLYNLFTKAKFPGRVRVGVVQQNEKDDVG 115
P PYPP++DSW DTT+ I+SFRD +C +TL+NLF+KA +P R+ GVVQQN +DD G
Sbjct: 106 PQPYPPETDSWSYTDTTLWTGIASFRDPQCGETLFNLFSKASYPERLTAGVVQQNLEDDEG 166
BLAST of EWM21556.1 vs. NCBI_GenBank
Match: gi|569367820|gb|ETO10355.1| (hypothetical protein RFI_27025 [Reticulomyxa filosa]) HSP 1 Score: 77.411 bits (189), Expect = 7.302e-14 Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 0
Query: 57 PYPPDSDSWQRPDTTVHVQISSFRDHRCPKTLYNLFTKAKFPGRVRVGVVQQNEKDD 113
P PP D ++R DT + V I+S+R+ RC TLYN FTKA FP RV +GVVQQNEK D
Sbjct: 50 PPPPYDDQYKRNDTKIMVLIASYRETRCKDTLYNFFTKAAFPNRVFIGVVQQNEKSD 106
BLAST of EWM21556.1 vs. NCBI_GenBank
Match: gi|569324225|gb|ETO00772.1| (hypothetical protein RFI_36668, partial [Reticulomyxa filosa]) HSP 1 Score: 73.1738 bits (178), Expect = 1.512e-13 Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 0
Query: 57 PYPPDSDSWQRPDTTVHVQISSFRDHRCPKTLYNLFTKAKFPGRVRVGVVQQNEKDD 113
P PP D ++R DT + V I+S+R+ RC TLYN FTKA FP RV +GVVQQNEK D
Sbjct: 50 PPPPYDDQYKRNDTKIMVLIASYRETRCKDTLYNFFTKAAFPNRVFIGVVQQNEKSD 106
BLAST of EWM21556.1 vs. NCBI_GenBank
Match: gi|569383195|gb|ETO15911.1| (hypothetical protein RFI_21452, partial [Reticulomyxa filosa]) HSP 1 Score: 67.0106 bits (162), Expect = 2.295e-10 Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 0
Query: 59 PPDSDSWQRPDTTVHVQISSFRDHRCPKTLYNLFTKAKFPGRVRVGVVQQNEKD 112
PP+ DSW+ DT ++V ISS D RC +TL++L T AK P RV +G+VQQN+K+
Sbjct: 30 PPNDDSWKSLDTAIYVGISSLMDDRCGRTLHSLLTTAKNPERVHIGIVQQNDKE 83 The following BLAST results are available for this feature:
BLAST of EWM21556.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 8
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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