EWM21556.1, cds9118 (CDS) Nannochloropsis gaditana

Overview
NameEWM21556.1
Unique Namecds9118
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:443611..443718 +
Alignment locationKK037251.1:443847..443908 +
Alignment locationKK037251.1:443978..444064 +
Alignment locationKK037251.1:444263..444440 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21556.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101135g2.5597.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:443611..443718 +
KK037251.1supercontigKK037251.1:443847..443908 +
KK037251.1supercontigKK037251.1:443978..444064 +
KK037251.1supercontigKK037251.1:444263..444440 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR021067Glycosyltransferase
Homology
BLAST of EWM21556.1 vs. NCBI_GenBank
Match: gi|585101807|gb|EWM21556.1| (hypothetical protein Naga_101135g2 [Nannochloropsis gaditana])

HSP 1 Score: 299.286 bits (765), Expect = 7.911e-103
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
Query:    1 MHRRRAARAAALVLCLLAVICDLPGAWGKEGKNRPMFYDGGAWHDLDEDPRPGEPLPYPPDSDSWQRPDTTVHVQISSFRDHRCPKTLYNLFTKAKFPGRVRVGVVQQNEKDDVGAQGGRACVAAWNLAHASPPPQTVSIRTAA 144
            MHRRRAARAAALVLCLLAVICDLPGAWGKEGKNRPMFYDGGAWHDLDEDPRPGEPLPYPPDSDSWQRPDTTVHVQISSFRDHRCPKTLYNLFTKAKFPGRVRVGVVQQNEKDDVGAQGGRACVAAWNLAHASPPPQTVSIRTAA
Sbjct:    1 MHRRRAARAAALVLCLLAVICDLPGAWGKEGKNRPMFYDGGAWHDLDEDPRPGEPLPYPPDSDSWQRPDTTVHVQISSFRDHRCPKTLYNLFTKAKFPGRVRVGVVQQNEKDDVGAQGGRACVAAWNLAHASPPPQTVSIRTAA 144          
BLAST of EWM21556.1 vs. NCBI_GenBank
Match: gi|553189802|ref|XP_005855077.1| (hypothetical protein NGA_0407000, partial [Nannochloropsis gaditana CCMP526] >gi|422293984|gb|EKU21284.1| hypothetical protein NGA_0407000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 174.096 bits (440), Expect = 3.539e-54
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0
Query:    1 MHRRRAARAAALVLCLLAVICDLPGAWGKEGKNRPMFYDGGAWHDLDEDPRPGEPLPYPPDSDSWQRPDTTVHVQISSFRDH 82
            MHRRRAARAAALVLCLLAVICDLPGAWGKEGKNRPMFYDGGAWHDLDEDPRPGEPLPYPPDSDSWQRPDTTVHVQISSFRDH
Sbjct:    1 MHRRRAARAAALVLCLLAVICDLPGAWGKEGKNRPMFYDGGAWHDLDEDPRPGEPLPYPPDSDSWQRPDTTVHVQISSFRDH 82          
BLAST of EWM21556.1 vs. NCBI_GenBank
Match: gi|585109966|gb|EWM27694.1| (ac transferase [Nannochloropsis gaditana])

HSP 1 Score: 98.9821 bits (245), Expect = 2.064e-21
Identity = 49/90 (54.44%), Postives = 56/90 (62.22%), Query Frame = 0
Query:   30 EGKNRPMF-----YDGGAWHDLDEDPRPGEPLPYPPDSDSWQRPDTTVHVQISSFRDHRCPKTLYNLFTKAKFPGRVRVGVVQQNEKDDV 114
            E +N   F     +  G W   DE+   G P PYPP +DSW   DT++ V ISSFRD+RCPKTLYNLFTKA  P RV  GVVQQN   DV
Sbjct:   37 EAQNENSFGKAAVFMNGRWTQFDENDDAGVPQPYPPKTDSWTLNDTSIMVSISSFRDYRCPKTLYNLFTKAANPDRVYAGVVQQNNAGDV 126          
BLAST of EWM21556.1 vs. NCBI_GenBank
Match: gi|298712439|emb|CBJ33215.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 91.2781 bits (225), Expect = 9.805e-19
Identity = 47/85 (55.29%), Postives = 57/85 (67.06%), Query Frame = 0
Query:   33 NRPMFYDGGAWHDL---DEDPRPGEPLPYPPDSDSWQRPDTTVHVQISSFRDHRCPKTLYNLFTKAKFPGRVRVGVVQQNEKDDV 114
            N  M +DG  W  L   DE PRP      PP + SW+R DT+V V +SSFRD RCP+TL N F+KAK+P RV VGVVQQN+ +DV
Sbjct:   98 NGAMVWDGNGWIALWDDDEAPRPP-----PPKTSSWKRSDTSVFVGVSSFRDKRCPQTLVNFFSKAKYPERVTVGVVQQNDHEDV 177          
BLAST of EWM21556.1 vs. NCBI_GenBank
Match: gi|298708476|emb|CBJ30600.1| ([Skp1-protein]-hydroxyproline N-acetylglucosaminyltransferase, family GT60 [Ectocarpus siliculosus])

HSP 1 Score: 79.337 bits (194), Expect = 1.612e-14
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 0
Query:   55 PLPYPPDSDSWQRPDTTVHVQISSFRDHRCPKTLYNLFTKAKFPGRVRVGVVQQNEKDDVG 115
            P PYPP++DSW   DTT+   I+SFRD +C +TL+NLF+KA +P R+  GVVQQN +DD G
Sbjct:  106 PQPYPPETDSWSYTDTTLWTGIASFRDPQCGETLFNLFSKASYPERLTAGVVQQNLEDDEG 166          
BLAST of EWM21556.1 vs. NCBI_GenBank
Match: gi|569367820|gb|ETO10355.1| (hypothetical protein RFI_27025 [Reticulomyxa filosa])

HSP 1 Score: 77.411 bits (189), Expect = 7.302e-14
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 0
Query:   57 PYPPDSDSWQRPDTTVHVQISSFRDHRCPKTLYNLFTKAKFPGRVRVGVVQQNEKDD 113
            P PP  D ++R DT + V I+S+R+ RC  TLYN FTKA FP RV +GVVQQNEK D
Sbjct:   50 PPPPYDDQYKRNDTKIMVLIASYRETRCKDTLYNFFTKAAFPNRVFIGVVQQNEKSD 106          
BLAST of EWM21556.1 vs. NCBI_GenBank
Match: gi|569324225|gb|ETO00772.1| (hypothetical protein RFI_36668, partial [Reticulomyxa filosa])

HSP 1 Score: 73.1738 bits (178), Expect = 1.512e-13
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 0
Query:   57 PYPPDSDSWQRPDTTVHVQISSFRDHRCPKTLYNLFTKAKFPGRVRVGVVQQNEKDD 113
            P PP  D ++R DT + V I+S+R+ RC  TLYN FTKA FP RV +GVVQQNEK D
Sbjct:   50 PPPPYDDQYKRNDTKIMVLIASYRETRCKDTLYNFFTKAAFPNRVFIGVVQQNEKSD 106          
BLAST of EWM21556.1 vs. NCBI_GenBank
Match: gi|569383195|gb|ETO15911.1| (hypothetical protein RFI_21452, partial [Reticulomyxa filosa])

HSP 1 Score: 67.0106 bits (162), Expect = 2.295e-10
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 0
Query:   59 PPDSDSWQRPDTTVHVQISSFRDHRCPKTLYNLFTKAKFPGRVRVGVVQQNEKD 112
            PP+ DSW+  DT ++V ISS  D RC +TL++L T AK P RV +G+VQQN+K+
Sbjct:   30 PPNDDSWKSLDTAIYVGISSLMDDRCGRTLHSLLTTAKNPERVHIGIVQQNDKE 83          
The following BLAST results are available for this feature:
BLAST of EWM21556.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|585101807|gb|EWM21556.1|7.911e-103100.00hypothetical protein Naga_101135g2 [Nannochloropsi... [more]
gi|553189802|ref|XP_005855077.1|3.539e-54100.00hypothetical protein NGA_0407000, partial [Nannoch... [more]
gi|585109966|gb|EWM27694.1|2.064e-2154.44ac transferase [Nannochloropsis gaditana][more]
gi|298712439|emb|CBJ33215.1|9.805e-1955.29conserved unknown protein [Ectocarpus siliculosus][more]
gi|298708476|emb|CBJ30600.1|1.612e-1457.38[Skp1-protein]-hydroxyproline N-acetylglucosaminyl... [more]
gi|569367820|gb|ETO10355.1|7.302e-1459.65hypothetical protein RFI_27025 [Reticulomyxa filos... [more]
gi|569324225|gb|ETO00772.1|1.512e-1359.65hypothetical protein RFI_36668, partial [Reticulom... [more]
gi|569383195|gb|ETO15911.1|2.295e-1053.70hypothetical protein RFI_21452, partial [Reticulom... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9148rna9148Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications