EWM21566.1, cds9109 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21566.1 vs. NCBI_GenBank
Match: gi|585101821|gb|EWM21566.1| (mitochondrial ribosomal protein l37 [Nannochloropsis gaditana]) HSP 1 Score: 421.779 bits (1083), Expect = 1.986e-149 Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0
Query: 1 MTYFSIIQPTDTRHVDFCVGGTTHISFCHFIASSCRPHWTVSLVRMASALPRSSCQCVSAIWQRIATPTITATFSNSSSQCQPPVSCGMRRRLLLALPFSTKAPAAKKGKKGGDEGGGSGAAETSVGDVSKVAPINIYKEGKDPPLLPDDQYPEWLFDIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNAAGQKL 202
MTYFSIIQPTDTRHVDFCVGGTTHISFCHFIASSCRPHWTVSLVRMASALPRSSCQCVSAIWQRIATPTITATFSNSSSQCQPPVSCGMRRRLLLALPFSTKAPAAKKGKKGGDEGGGSGAAETSVGDVSKVAPINIYKEGKDPPLLPDDQYPEWLFDIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNAAGQKL
Sbjct: 1 MTYFSIIQPTDTRHVDFCVGGTTHISFCHFIASSCRPHWTVSLVRMASALPRSSCQCVSAIWQRIATPTITATFSNSSSQCQPPVSCGMRRRLLLALPFSTKAPAAKKGKKGGDEGGGSGAAETSVGDVSKVAPINIYKEGKDPPLLPDDQYPEWLFDIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNAAGQKL 202
BLAST of EWM21566.1 vs. NCBI_GenBank
Match: gi|1204931822|ref|XP_021299167.1| (54S ribosomal protein L37, mitochondrial-like [Herrania umbratica]) HSP 1 Score: 70.8626 bits (172), Expect = 2.617e-12 Identity = 45/124 (36.29%), Postives = 60/124 (48.39%), Query Frame = 0
Query: 81 CQPPVSCGMRRRLLLALPFSTKAPAAKKGKKGGDEGGGSGAAETSVGDVSKVAPINIYKEGKDPPLLPDDQYPEW---LFDIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNAAGQK 201
+ V G RR F+ A AKKG KG + + + V NI K+G DP ++PD +YP+W L D RP L E R+ +I LP + +R+ KL NR IKE NA K
Sbjct: 15 AKEAVGVGHRR-------FAAGASKAKKGSKGAASDAPKASILSKEVKSTTVVGANILKDGADPKIMPDSEYPDWLWHLLDKRP-ALSELRRKNIETLPYEDLKRFVKLDNRARIKENNAVKAK 130
BLAST of EWM21566.1 vs. NCBI_GenBank
Match: gi|470132431|ref|XP_004302085.1| (PREDICTED: 54S ribosomal protein L37, mitochondrial-like [Fragaria vesca subsp. vesca]) HSP 1 Score: 70.0922 bits (170), Expect = 5.323e-12 Identity = 42/98 (42.86%), Postives = 55/98 (56.12%), Query Frame = 0
Query: 111 KGGDEGGGSGAAETSVGD----VSKVAPINIYKEGKDPPLLPDDQYPEWLF---DIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNAAGQK 201
K G +GG A + S+ D + V NI K+G DP +LPD +YPEWL+ D RP L E R+ DI LP + +R+ KL NR IKE N+ K
Sbjct: 36 KKGSKGGAGDAPKASILDKEVKSTTVVGANILKDGTDPKILPDSEYPEWLWHLVDKRP-ALSELRRKDIETLPYEDLKRFVKLDNRARIKENNSLKAK 132
BLAST of EWM21566.1 vs. NCBI_GenBank
Match: gi|763803900|gb|KJB70838.1| (hypothetical protein B456_011G092800 [Gossypium raimondii]) HSP 1 Score: 70.0922 bits (170), Expect = 7.177e-12 Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 0
Query: 96 ALPFSTKAPAAKKGK-KGGDEGGGSGAAETSVGDVSK------VAPINIYKEGKDPPLLPDDQYPEW---LFDIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNAAGQK 201
A+ F + AA GK K G +G S A + S+ +SK V NI K+G DP ++PD +YP+W L D RP L E R+ +I LP + +R+ KL NR +IKE N+ K
Sbjct: 34 AIAFGQRTFAAAAGKSKKGSKGAASDAPKASI--LSKEVKSTTVVGANILKDGTDPKIMPDSEYPDWVWHLLDKRP-ALSELRRKNIETLPYEDLKRFVKLDNRALIKENNSIKAK 146
BLAST of EWM21566.1 vs. NCBI_GenBank
Match: gi|661895164|emb|CDP00969.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 69.3218 bits (168), Expect = 8.152e-12 Identity = 42/102 (41.18%), Postives = 54/102 (52.94%), Query Frame = 0
Query: 99 FSTKAPAAKKGKKGGDEGGGSGAAETSVGDVSKVAPINIYKEGKDPPLLPDDQYPEW---LFDIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNA 197
FS + AKKG KG + V + V NI K+G DP +LPD +YPEW L D RP L E R+ D+ LP + +R+ KL NR IKE N+
Sbjct: 27 FSAGSGKAKKGSKGAADAPKESTLSKEVKSTT-VVGANILKDGADPKILPDSEYPEWLSHLLDKRP-ALSELRRKDLETLPYEDLKRFVKLDNRARIKENNS 126
BLAST of EWM21566.1 vs. NCBI_GenBank
Match: gi|823249087|ref|XP_012457195.1| (PREDICTED: 39S ribosomal protein L54, mitochondrial-like [Gossypium raimondii] >gi|823249089|ref|XP_012457196.1| PREDICTED: 39S ribosomal protein L54, mitochondrial-like [Gossypium raimondii] >gi|763803899|gb|KJB70837.1| hypothetical protein B456_011G092800 [Gossypium raimondii] >gi|763803901|gb|KJB70839.1| hypothetical protein B456_011G092800 [Gossypium raimondii]) HSP 1 Score: 69.3218 bits (168), Expect = 8.238e-12 Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 0
Query: 96 ALPFSTKAPAAKKGK-KGGDEGGGSGAAETSVGDVSK------VAPINIYKEGKDPPLLPDDQYPEW---LFDIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNAAGQK 201
A+ F + AA GK K G +G S A + S+ +SK V NI K+G DP ++PD +YP+W L D RP L E R+ +I LP + +R+ KL NR +IKE N+ K
Sbjct: 18 AIAFGQRTFAAAAGKSKKGSKGAASDAPKASI--LSKEVKSTTVVGANILKDGTDPKIMPDSEYPDWVWHLLDKRP-ALSELRRKNIETLPYEDLKRFVKLDNRALIKENNSIKAK 130
BLAST of EWM21566.1 vs. NCBI_GenBank
Match: gi|1029076597|ref|XP_016698527.1| (PREDICTED: 39S ribosomal protein L54, mitochondrial-like [Gossypium hirsutum]) HSP 1 Score: 69.3218 bits (168), Expect = 8.413e-12 Identity = 46/116 (39.66%), Postives = 65/116 (56.03%), Query Frame = 0
Query: 96 ALPFSTKAPAAKKGK-KGGDEGGGSGAAETSVGDVSK------VAPINIYKEGKDPPLLPDDQYPEWLF---DIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNAAGQK 201
A+ F + AA GK K G +G S A + S+ +SK V NI K+G DP ++PD +YP+WL+ D RP L E R+ +I LP + +R+ KL NR +IKE N+ K
Sbjct: 18 AIAFGQRTFAAAAGKSKKGSKGAASDAPKASI--LSKEVKSTTVVGANILKDGTDPKIMPDSEYPDWLWHLLDKRP-ALSELRRKNIETLPYEDLKRFVKLDNRALIKENNSIKAK 130
BLAST of EWM21566.1 vs. NCBI_GenBank
Match: gi|1050647964|ref|XP_017647320.1| (PREDICTED: 54S ribosomal protein L37, mitochondrial-like [Gossypium arboreum] >gi|728819706|gb|KHG03339.1| 54S ribosomal L37, mitochondrial [Gossypium arboreum]) HSP 1 Score: 67.781 bits (164), Expect = 3.659e-11 Identity = 47/116 (40.52%), Postives = 64/116 (55.17%), Query Frame = 0
Query: 96 ALPFSTKAPAAKKGK-KGGDEGGGSGAAETSVGDVSK------VAPINIYKEGKDPPLLPDDQYPEWLF---DIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNAAGQK 201
A+ F + AA GK K G +G S A + SV +SK V NI K+G DP ++PD +YP+WL+ D RP L E R+ +I LP + +R+ KL NR IKE N+ K
Sbjct: 18 AIAFGQRTFAAAAGKSKKGSKGATSDAPKASV--LSKEVKSTTVVGANILKDGTDPKIMPDSEYPDWLWHLLDKRP-ALSELRRKNIETLPYEDLKRFVKLDNRARIKENNSIKAK 130
BLAST of EWM21566.1 vs. NCBI_GenBank
Match: gi|1150749445|ref|XP_020248853.1| (39S ribosomal protein L54, mitochondrial-like [Asparagus officinalis]) HSP 1 Score: 68.1662 bits (165), Expect = 3.838e-11 Identity = 43/103 (41.75%), Postives = 56/103 (54.37%), Query Frame = 0
Query: 105 AAKKGKKGGDEGGGSGAAETSVGDVSKVAPI---NIYKEGKDPPLLPDDQYPEWLF---DIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNAAGQK 201
A K KK G +G G E+ + K + NI KEG DP +LPD +YP+WLF D RP L E R+ ++ LP + +R+ KL NR IKE NA K
Sbjct: 49 AGPKSKKSG-KGAGDAPKESVLTKEMKSTTVFGANILKEGTDPKVLPDSEYPDWLFHLVDKRP-PLSELRRKNVETLPYEDLKRFVKLDNRSRIKENNAVKAK 149
BLAST of EWM21566.1 vs. NCBI_GenBank
Match: gi|747098601|ref|XP_011097320.1| (54S ribosomal protein L37, mitochondrial [Sesamum indicum]) HSP 1 Score: 67.3958 bits (163), Expect = 5.635e-11 Identity = 42/100 (42.00%), Postives = 55/100 (55.00%), Query Frame = 0
Query: 106 AKKGKKGGDEGGGSGAAETSVG-DVSKVAPINIYKEGKDPPLLPDDQYPEW---LFDIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNAAGQK 201
AKKG KGG A+ S + V NI K+G+DP +LPD +YP+W L D RP L E R+ D+ LP + +R+ KL NR IKE N+ K
Sbjct: 33 AKKGSKGGAAADAPKASLLSKEVKSTTVFGANILKDGQDPKILPDSEYPDWLWHLLDKRP-ALSELRRKDVESLPYEDLKRFVKLDNRARIKENNSLKAK 131 The following BLAST results are available for this feature:
BLAST of EWM21566.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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