EWM21566.1, cds9109 (CDS) Nannochloropsis gaditana

Overview
NameEWM21566.1
Unique Namecds9109
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:422261..422740 -
Alignment locationKK037251.1:421916..422044 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21566.1
Productmitochondrial ribosomal protein l37
Orig transcript idgnl|cribi|Naga_100012g92.1898.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:422261..422740 -
KK037251.1supercontigKK037251.1:421916..422044 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR013870Ribosomal_L37_mit
Homology
BLAST of EWM21566.1 vs. NCBI_GenBank
Match: gi|585101821|gb|EWM21566.1| (mitochondrial ribosomal protein l37 [Nannochloropsis gaditana])

HSP 1 Score: 421.779 bits (1083), Expect = 1.986e-149
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0
Query:    1 MTYFSIIQPTDTRHVDFCVGGTTHISFCHFIASSCRPHWTVSLVRMASALPRSSCQCVSAIWQRIATPTITATFSNSSSQCQPPVSCGMRRRLLLALPFSTKAPAAKKGKKGGDEGGGSGAAETSVGDVSKVAPINIYKEGKDPPLLPDDQYPEWLFDIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNAAGQKL 202
            MTYFSIIQPTDTRHVDFCVGGTTHISFCHFIASSCRPHWTVSLVRMASALPRSSCQCVSAIWQRIATPTITATFSNSSSQCQPPVSCGMRRRLLLALPFSTKAPAAKKGKKGGDEGGGSGAAETSVGDVSKVAPINIYKEGKDPPLLPDDQYPEWLFDIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNAAGQKL
Sbjct:    1 MTYFSIIQPTDTRHVDFCVGGTTHISFCHFIASSCRPHWTVSLVRMASALPRSSCQCVSAIWQRIATPTITATFSNSSSQCQPPVSCGMRRRLLLALPFSTKAPAAKKGKKGGDEGGGSGAAETSVGDVSKVAPINIYKEGKDPPLLPDDQYPEWLFDIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNAAGQKL 202          
BLAST of EWM21566.1 vs. NCBI_GenBank
Match: gi|1204931822|ref|XP_021299167.1| (54S ribosomal protein L37, mitochondrial-like [Herrania umbratica])

HSP 1 Score: 70.8626 bits (172), Expect = 2.617e-12
Identity = 45/124 (36.29%), Postives = 60/124 (48.39%), Query Frame = 0
Query:   81 CQPPVSCGMRRRLLLALPFSTKAPAAKKGKKGGDEGGGSGAAETSVGDVSKVAPINIYKEGKDPPLLPDDQYPEW---LFDIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNAAGQK 201
             +  V  G RR       F+  A  AKKG KG        +  +     + V   NI K+G DP ++PD +YP+W   L D RP  L E R+ +I  LP  + +R+ KL NR  IKE NA   K
Sbjct:   15 AKEAVGVGHRR-------FAAGASKAKKGSKGAASDAPKASILSKEVKSTTVVGANILKDGADPKIMPDSEYPDWLWHLLDKRP-ALSELRRKNIETLPYEDLKRFVKLDNRARIKENNAVKAK 130          
BLAST of EWM21566.1 vs. NCBI_GenBank
Match: gi|470132431|ref|XP_004302085.1| (PREDICTED: 54S ribosomal protein L37, mitochondrial-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 70.0922 bits (170), Expect = 5.323e-12
Identity = 42/98 (42.86%), Postives = 55/98 (56.12%), Query Frame = 0
Query:  111 KGGDEGGGSGAAETSVGD----VSKVAPINIYKEGKDPPLLPDDQYPEWLF---DIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNAAGQK 201
            K G +GG   A + S+ D     + V   NI K+G DP +LPD +YPEWL+   D RP  L E R+ DI  LP  + +R+ KL NR  IKE N+   K
Sbjct:   36 KKGSKGGAGDAPKASILDKEVKSTTVVGANILKDGTDPKILPDSEYPEWLWHLVDKRP-ALSELRRKDIETLPYEDLKRFVKLDNRARIKENNSLKAK 132          
BLAST of EWM21566.1 vs. NCBI_GenBank
Match: gi|763803900|gb|KJB70838.1| (hypothetical protein B456_011G092800 [Gossypium raimondii])

HSP 1 Score: 70.0922 bits (170), Expect = 7.177e-12
Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 0
Query:   96 ALPFSTKAPAAKKGK-KGGDEGGGSGAAETSVGDVSK------VAPINIYKEGKDPPLLPDDQYPEW---LFDIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNAAGQK 201
            A+ F  +  AA  GK K G +G  S A + S+  +SK      V   NI K+G DP ++PD +YP+W   L D RP  L E R+ +I  LP  + +R+ KL NR +IKE N+   K
Sbjct:   34 AIAFGQRTFAAAAGKSKKGSKGAASDAPKASI--LSKEVKSTTVVGANILKDGTDPKIMPDSEYPDWVWHLLDKRP-ALSELRRKNIETLPYEDLKRFVKLDNRALIKENNSIKAK 146          
BLAST of EWM21566.1 vs. NCBI_GenBank
Match: gi|661895164|emb|CDP00969.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 69.3218 bits (168), Expect = 8.152e-12
Identity = 42/102 (41.18%), Postives = 54/102 (52.94%), Query Frame = 0
Query:   99 FSTKAPAAKKGKKGGDEGGGSGAAETSVGDVSKVAPINIYKEGKDPPLLPDDQYPEW---LFDIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNA 197
            FS  +  AKKG KG  +          V   + V   NI K+G DP +LPD +YPEW   L D RP  L E R+ D+  LP  + +R+ KL NR  IKE N+
Sbjct:   27 FSAGSGKAKKGSKGAADAPKESTLSKEVKSTT-VVGANILKDGADPKILPDSEYPEWLSHLLDKRP-ALSELRRKDLETLPYEDLKRFVKLDNRARIKENNS 126          
BLAST of EWM21566.1 vs. NCBI_GenBank
Match: gi|823249087|ref|XP_012457195.1| (PREDICTED: 39S ribosomal protein L54, mitochondrial-like [Gossypium raimondii] >gi|823249089|ref|XP_012457196.1| PREDICTED: 39S ribosomal protein L54, mitochondrial-like [Gossypium raimondii] >gi|763803899|gb|KJB70837.1| hypothetical protein B456_011G092800 [Gossypium raimondii] >gi|763803901|gb|KJB70839.1| hypothetical protein B456_011G092800 [Gossypium raimondii])

HSP 1 Score: 69.3218 bits (168), Expect = 8.238e-12
Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 0
Query:   96 ALPFSTKAPAAKKGK-KGGDEGGGSGAAETSVGDVSK------VAPINIYKEGKDPPLLPDDQYPEW---LFDIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNAAGQK 201
            A+ F  +  AA  GK K G +G  S A + S+  +SK      V   NI K+G DP ++PD +YP+W   L D RP  L E R+ +I  LP  + +R+ KL NR +IKE N+   K
Sbjct:   18 AIAFGQRTFAAAAGKSKKGSKGAASDAPKASI--LSKEVKSTTVVGANILKDGTDPKIMPDSEYPDWVWHLLDKRP-ALSELRRKNIETLPYEDLKRFVKLDNRALIKENNSIKAK 130          
BLAST of EWM21566.1 vs. NCBI_GenBank
Match: gi|1029076597|ref|XP_016698527.1| (PREDICTED: 39S ribosomal protein L54, mitochondrial-like [Gossypium hirsutum])

HSP 1 Score: 69.3218 bits (168), Expect = 8.413e-12
Identity = 46/116 (39.66%), Postives = 65/116 (56.03%), Query Frame = 0
Query:   96 ALPFSTKAPAAKKGK-KGGDEGGGSGAAETSVGDVSK------VAPINIYKEGKDPPLLPDDQYPEWLF---DIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNAAGQK 201
            A+ F  +  AA  GK K G +G  S A + S+  +SK      V   NI K+G DP ++PD +YP+WL+   D RP  L E R+ +I  LP  + +R+ KL NR +IKE N+   K
Sbjct:   18 AIAFGQRTFAAAAGKSKKGSKGAASDAPKASI--LSKEVKSTTVVGANILKDGTDPKIMPDSEYPDWLWHLLDKRP-ALSELRRKNIETLPYEDLKRFVKLDNRALIKENNSIKAK 130          
BLAST of EWM21566.1 vs. NCBI_GenBank
Match: gi|1050647964|ref|XP_017647320.1| (PREDICTED: 54S ribosomal protein L37, mitochondrial-like [Gossypium arboreum] >gi|728819706|gb|KHG03339.1| 54S ribosomal L37, mitochondrial [Gossypium arboreum])

HSP 1 Score: 67.781 bits (164), Expect = 3.659e-11
Identity = 47/116 (40.52%), Postives = 64/116 (55.17%), Query Frame = 0
Query:   96 ALPFSTKAPAAKKGK-KGGDEGGGSGAAETSVGDVSK------VAPINIYKEGKDPPLLPDDQYPEWLF---DIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNAAGQK 201
            A+ F  +  AA  GK K G +G  S A + SV  +SK      V   NI K+G DP ++PD +YP+WL+   D RP  L E R+ +I  LP  + +R+ KL NR  IKE N+   K
Sbjct:   18 AIAFGQRTFAAAAGKSKKGSKGATSDAPKASV--LSKEVKSTTVVGANILKDGTDPKIMPDSEYPDWLWHLLDKRP-ALSELRRKNIETLPYEDLKRFVKLDNRARIKENNSIKAK 130          
BLAST of EWM21566.1 vs. NCBI_GenBank
Match: gi|1150749445|ref|XP_020248853.1| (39S ribosomal protein L54, mitochondrial-like [Asparagus officinalis])

HSP 1 Score: 68.1662 bits (165), Expect = 3.838e-11
Identity = 43/103 (41.75%), Postives = 56/103 (54.37%), Query Frame = 0
Query:  105 AAKKGKKGGDEGGGSGAAETSVGDVSKVAPI---NIYKEGKDPPLLPDDQYPEWLF---DIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNAAGQK 201
            A  K KK G +G G    E+ +    K   +   NI KEG DP +LPD +YP+WLF   D RP  L E R+ ++  LP  + +R+ KL NR  IKE NA   K
Sbjct:   49 AGPKSKKSG-KGAGDAPKESVLTKEMKSTTVFGANILKEGTDPKVLPDSEYPDWLFHLVDKRP-PLSELRRKNVETLPYEDLKRFVKLDNRSRIKENNAVKAK 149          
BLAST of EWM21566.1 vs. NCBI_GenBank
Match: gi|747098601|ref|XP_011097320.1| (54S ribosomal protein L37, mitochondrial [Sesamum indicum])

HSP 1 Score: 67.3958 bits (163), Expect = 5.635e-11
Identity = 42/100 (42.00%), Postives = 55/100 (55.00%), Query Frame = 0
Query:  106 AKKGKKGGDEGGGSGAAETSVG-DVSKVAPINIYKEGKDPPLLPDDQYPEW---LFDIRPLTLPEYRKMDIAKLPLREQRRYWKLLNRQVIKEKNAAGQK 201
            AKKG KGG       A+  S     + V   NI K+G+DP +LPD +YP+W   L D RP  L E R+ D+  LP  + +R+ KL NR  IKE N+   K
Sbjct:   33 AKKGSKGGAAADAPKASLLSKEVKSTTVFGANILKDGQDPKILPDSEYPDWLWHLLDKRP-ALSELRRKDVESLPYEDLKRFVKLDNRARIKENNSLKAK 131          
The following BLAST results are available for this feature:
BLAST of EWM21566.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101821|gb|EWM21566.1|1.986e-149100.00mitochondrial ribosomal protein l37 [Nannochlorops... [more]
gi|1204931822|ref|XP_021299167.1|2.617e-1236.2954S ribosomal protein L37, mitochondrial-like [Her... [more]
gi|470132431|ref|XP_004302085.1|5.323e-1242.86PREDICTED: 54S ribosomal protein L37, mitochondria... [more]
gi|763803900|gb|KJB70838.1|7.177e-1239.66hypothetical protein B456_011G092800 [Gossypium ra... [more]
gi|661895164|emb|CDP00969.1|8.152e-1241.18unnamed protein product [Coffea canephora][more]
gi|823249087|ref|XP_012457195.1|8.238e-1239.66PREDICTED: 39S ribosomal protein L54, mitochondria... [more]
gi|1029076597|ref|XP_016698527.1|8.413e-1239.66PREDICTED: 39S ribosomal protein L54, mitochondria... [more]
gi|1050647964|ref|XP_017647320.1|3.659e-1140.52PREDICTED: 54S ribosomal protein L37, mitochondria... [more]
gi|1150749445|ref|XP_020248853.1|3.838e-1141.7539S ribosomal protein L54, mitochondrial-like [Asp... [more]
gi|747098601|ref|XP_011097320.1|5.635e-1142.0054S ribosomal protein L37, mitochondrial [Sesamum ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9139rna9139Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications