EWM21624.1, cds9103 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21624.1 vs. NCBI_GenBank
Match: gi|585101879|gb|EWM21624.1| (Ubiquitin-fold modifier 1 [Nannochloropsis gaditana]) HSP 1 Score: 253.447 bits (646), Expect = 2.088e-85 Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
Query: 1 MASNNSNSSSCSRSKSGVDASPKVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVGGVRRDRTQSKWRSHELNWLK 123
MASNNSNSSSCSRSKSGVDASPKVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVGGVRRDRTQSKWRSHELNWLK
Sbjct: 1 MASNNSNSSSCSRSKSGVDASPKVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVGGVRRDRTQSKWRSHELNWLK 123
BLAST of EWM21624.1 vs. NCBI_GenBank
Match: gi|294846027|gb|ADF43185.1| (PR46am [Chlamydomonas reinhardtii]) HSP 1 Score: 159.073 bits (401), Expect = 2.066e-48 Identity = 73/87 (83.91%), Postives = 81/87 (93.10%), Query Frame = 0
Query: 23 KVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVGGVRRDR 109
KVTFKVTLTSDPKLPFRV SVPE+APFTAVLK+ AEEF+VPAQTSA+ITNDGVGINP Q+AGNV +KHG+ELRLIPRDRVGG+ R R
Sbjct: 10 KVTFKVTLTSDPKLPFRVFSVPEEAPFTAVLKFAAEEFKVPAQTSAIITNDGVGINPQQTAGNVFLKHGSELRLIPRDRVGGISRAR 96
BLAST of EWM21624.1 vs. NCBI_GenBank
Match: gi|669140954|ref|XP_008606045.1| (ubiquitin-fold modifier 1 [Saprolegnia diclina VS20] >gi|530742104|gb|EQC40346.1| ubiquitin-fold modifier 1 [Saprolegnia diclina VS20]) HSP 1 Score: 157.918 bits (398), Expect = 4.174e-48 Identity = 73/84 (86.90%), Postives = 81/84 (96.43%), Query Frame = 0
Query: 21 SPKVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVGG 104
S KVTFK+TLTSDPKLPFR+VSVPE+APFTAVLKYVAEEFRVPA TSA+ITNDG+GINP+Q+AGNV +KHGTELRLIPRDRVGG
Sbjct: 2 SGKVTFKITLTSDPKLPFRIVSVPEEAPFTAVLKYVAEEFRVPAATSAIITNDGIGINPSQTAGNVFLKHGTELRLIPRDRVGG 85
BLAST of EWM21624.1 vs. NCBI_GenBank
Match: gi|159477074|ref|XP_001696636.1| (ubiquitin-fold modifier 1 [Chlamydomonas reinhardtii] >gi|20140686|sp|Q94EY2.1|UFM1_CHLRE RecName: Full=Ubiquitin-fold modifier 1; Flags: Precursor >gi|14595651|gb|AAK70874.1|AF387366_2 unknown [Chlamydomonas reinhardtii] >gi|158282861|gb|EDP08613.1| ubiquitin-fold modifier 1 [Chlamydomonas reinhardtii] >gi|294845990|gb|ADF43149.1| PR46ap [Chlamydomonas reinhardtii]) HSP 1 Score: 157.532 bits (397), Expect = 7.292e-48 Identity = 73/87 (83.91%), Postives = 80/87 (91.95%), Query Frame = 0
Query: 23 KVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVGGVRRDR 109
KVTFKVTLTSDPKLPFRV SVPE+APFTAVLK+ AEEF+VPAQTSA+ITNDGVGINP Q AGNV +KHG+ELRLIPRDRVGG+ R R
Sbjct: 10 KVTFKVTLTSDPKLPFRVFSVPEEAPFTAVLKFAAEEFKVPAQTSAIITNDGVGINPQQIAGNVFLKHGSELRLIPRDRVGGISRAR 96
BLAST of EWM21624.1 vs. NCBI_GenBank
Match: gi|675175039|ref|XP_008896404.1| (ubiquitin-fold modifier 1 [Phytophthora parasitica INRA-310] >gi|568104118|gb|ETN18775.1| ubiquitin-fold modifier 1 [Phytophthora parasitica INRA-310]) HSP 1 Score: 155.606 bits (392), Expect = 5.853e-47 Identity = 72/88 (81.82%), Postives = 81/88 (92.05%), Query Frame = 0
Query: 17 GVDASPKVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVGG 104
G+ + KVTFKVTLTSDPKLP+RVV+VPE APFTAVLKYVAEEF VPA TSA+ITNDG+GINP+QSAGNV +KHG+ELRLIPRDRVGG
Sbjct: 10 GLTPAAKVTFKVTLTSDPKLPYRVVNVPEQAPFTAVLKYVAEEFHVPAATSAIITNDGIGINPSQSAGNVFLKHGSELRLIPRDRVGG 97
BLAST of EWM21624.1 vs. NCBI_GenBank
Match: gi|302782407|ref|XP_002972977.1| (hypothetical protein SELMODRAFT_413335 [Selaginella moellendorffii] >gi|302823491|ref|XP_002993398.1| hypothetical protein SELMODRAFT_163038 [Selaginella moellendorffii] >gi|300138829|gb|EFJ05583.1| hypothetical protein SELMODRAFT_163038 [Selaginella moellendorffii] >gi|300159578|gb|EFJ26198.1| hypothetical protein SELMODRAFT_413335 [Selaginella moellendorffii]) HSP 1 Score: 154.836 bits (390), Expect = 1.164e-46 Identity = 71/81 (87.65%), Postives = 79/81 (97.53%), Query Frame = 0
Query: 23 KVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVG 103
KVTFKVTLTSDPKLP++V+SVPE+APFTAVLKYVAEEF+VPAQTSA+ITNDGVGINP QSAGNV +KHG+ELRLIPRDRVG
Sbjct: 26 KVTFKVTLTSDPKLPYKVLSVPEEAPFTAVLKYVAEEFKVPAQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVG 106
BLAST of EWM21624.1 vs. NCBI_GenBank
Match: gi|75107765|sp|Q5PU89.1|UFM1_CHLIN (RecName: Full=Ubiquitin-fold modifier 1; AltName: Full=Protein PR46A; Flags: Precursor >gi|56112391|gb|AAV71156.1| PR46a [Chlamydomonas incerta]) HSP 1 Score: 154.451 bits (389), Expect = 1.721e-46 Identity = 71/82 (86.59%), Postives = 78/82 (95.12%), Query Frame = 0
Query: 23 KVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVGG 104
KVTFKVTLTSDPKLPFRV SVPE+APFTAVLK+ AEEF+VPAQTSA+ITNDGVGINP Q+AGNV +KHG+ELRLIPRDRVGG
Sbjct: 13 KVTFKVTLTSDPKLPFRVFSVPEEAPFTAVLKFAAEEFKVPAQTSAIITNDGVGINPQQTAGNVFLKHGSELRLIPRDRVGG 94
BLAST of EWM21624.1 vs. NCBI_GenBank
Match: gi|675175041|ref|XP_008896405.1| (ubiquitin-fold modifier 1 [Phytophthora parasitica INRA-310] >gi|566013001|gb|ETI35912.1| ubiquitin-fold modifier 1 [Phytophthora parasitica P1569] >gi|567950379|gb|ETK76092.1| ubiquitin-fold modifier 1 [Phytophthora parasitica] >gi|567979048|gb|ETL29530.1| ubiquitin-fold modifier 1 [Phytophthora parasitica] >gi|568008539|gb|ETL82756.1| ubiquitin-fold modifier 1 [Phytophthora parasitica] >gi|568038466|gb|ETM35996.1| ubiquitin-fold modifier 1 [Phytophthora parasitica] >gi|568104119|gb|ETN18776.1| ubiquitin-fold modifier 1 [Phytophthora parasitica INRA-310]) HSP 1 Score: 153.68 bits (387), Expect = 2.322e-46 Identity = 71/82 (86.59%), Postives = 78/82 (95.12%), Query Frame = 0
Query: 23 KVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVGG 104
KVTFKVTLTSDPKLP+RVV+VPE APFTAVLKYVAEEF VPA TSA+ITNDG+GINP+QSAGNV +KHG+ELRLIPRDRVGG
Sbjct: 4 KVTFKVTLTSDPKLPYRVVNVPEQAPFTAVLKYVAEEFHVPAATSAIITNDGIGINPSQSAGNVFLKHGSELRLIPRDRVGG 85
BLAST of EWM21624.1 vs. NCBI_GenBank
Match: gi|570316676|gb|ETO64624.1| (ubiquitin-fold modifier 1 [Phytophthora parasitica P1976] >gi|570940466|gb|ETP05723.1| ubiquitin-fold modifier 1 [Phytophthora parasitica CJ01A1] >gi|570970730|gb|ETP33849.1| ubiquitin-fold modifier 1 [Phytophthora parasitica P10297]) HSP 1 Score: 154.836 bits (390), Expect = 2.966e-46 Identity = 72/85 (84.71%), Postives = 80/85 (94.12%), Query Frame = 0
Query: 20 ASPKVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVGG 104
A+ KVTFKVTLTSDPKLP+RVV+VPE APFTAVLKYVAEEF VPA TSA+ITNDG+GINP+QSAGNV +KHG+ELRLIPRDRVGG
Sbjct: 42 AAAKVTFKVTLTSDPKLPYRVVNVPEQAPFTAVLKYVAEEFHVPAATSAIITNDGIGINPSQSAGNVFLKHGSELRLIPRDRVGG 126
BLAST of EWM21624.1 vs. NCBI_GenBank
Match: gi|297592106|gb|ADI46891.1| (PR46af [Volvox carteri f. nagariensis] >gi|297592179|gb|ADI46963.1| PR46am [Volvox carteri f. nagariensis]) HSP 1 Score: 152.14 bits (383), Expect = 9.270e-46 Identity = 70/81 (86.42%), Postives = 77/81 (95.06%), Query Frame = 0
Query: 23 KVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVG 103
KVTFKVTLTSDPKLPFRV SVPE+APFTAVLK+ AEEF+VPAQTSA+ITNDGVGINP Q+AGNV +KHG+ELRLIPRDRVG
Sbjct: 10 KVTFKVTLTSDPKLPFRVFSVPEEAPFTAVLKFAAEEFKVPAQTSAIITNDGVGINPKQTAGNVFLKHGSELRLIPRDRVG 90 The following BLAST results are available for this feature:
BLAST of EWM21624.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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