EWM21624.1, cds9103 (CDS) Nannochloropsis gaditana

Overview
NameEWM21624.1
Unique Namecds9103
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:406578..406949 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21624.1
ProductUbiquitin-fold modifier 1
Orig transcript idgnl|cribi|Naga_100012g85.1956.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:406578..406949 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR005375UFM1
Homology
BLAST of EWM21624.1 vs. NCBI_GenBank
Match: gi|585101879|gb|EWM21624.1| (Ubiquitin-fold modifier 1 [Nannochloropsis gaditana])

HSP 1 Score: 253.447 bits (646), Expect = 2.088e-85
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
Query:    1 MASNNSNSSSCSRSKSGVDASPKVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVGGVRRDRTQSKWRSHELNWLK 123
            MASNNSNSSSCSRSKSGVDASPKVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVGGVRRDRTQSKWRSHELNWLK
Sbjct:    1 MASNNSNSSSCSRSKSGVDASPKVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVGGVRRDRTQSKWRSHELNWLK 123          
BLAST of EWM21624.1 vs. NCBI_GenBank
Match: gi|294846027|gb|ADF43185.1| (PR46am [Chlamydomonas reinhardtii])

HSP 1 Score: 159.073 bits (401), Expect = 2.066e-48
Identity = 73/87 (83.91%), Postives = 81/87 (93.10%), Query Frame = 0
Query:   23 KVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVGGVRRDR 109
            KVTFKVTLTSDPKLPFRV SVPE+APFTAVLK+ AEEF+VPAQTSA+ITNDGVGINP Q+AGNV +KHG+ELRLIPRDRVGG+ R R
Sbjct:   10 KVTFKVTLTSDPKLPFRVFSVPEEAPFTAVLKFAAEEFKVPAQTSAIITNDGVGINPQQTAGNVFLKHGSELRLIPRDRVGGISRAR 96          
BLAST of EWM21624.1 vs. NCBI_GenBank
Match: gi|669140954|ref|XP_008606045.1| (ubiquitin-fold modifier 1 [Saprolegnia diclina VS20] >gi|530742104|gb|EQC40346.1| ubiquitin-fold modifier 1 [Saprolegnia diclina VS20])

HSP 1 Score: 157.918 bits (398), Expect = 4.174e-48
Identity = 73/84 (86.90%), Postives = 81/84 (96.43%), Query Frame = 0
Query:   21 SPKVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVGG 104
            S KVTFK+TLTSDPKLPFR+VSVPE+APFTAVLKYVAEEFRVPA TSA+ITNDG+GINP+Q+AGNV +KHGTELRLIPRDRVGG
Sbjct:    2 SGKVTFKITLTSDPKLPFRIVSVPEEAPFTAVLKYVAEEFRVPAATSAIITNDGIGINPSQTAGNVFLKHGTELRLIPRDRVGG 85          
BLAST of EWM21624.1 vs. NCBI_GenBank
Match: gi|159477074|ref|XP_001696636.1| (ubiquitin-fold modifier 1 [Chlamydomonas reinhardtii] >gi|20140686|sp|Q94EY2.1|UFM1_CHLRE RecName: Full=Ubiquitin-fold modifier 1; Flags: Precursor >gi|14595651|gb|AAK70874.1|AF387366_2 unknown [Chlamydomonas reinhardtii] >gi|158282861|gb|EDP08613.1| ubiquitin-fold modifier 1 [Chlamydomonas reinhardtii] >gi|294845990|gb|ADF43149.1| PR46ap [Chlamydomonas reinhardtii])

HSP 1 Score: 157.532 bits (397), Expect = 7.292e-48
Identity = 73/87 (83.91%), Postives = 80/87 (91.95%), Query Frame = 0
Query:   23 KVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVGGVRRDR 109
            KVTFKVTLTSDPKLPFRV SVPE+APFTAVLK+ AEEF+VPAQTSA+ITNDGVGINP Q AGNV +KHG+ELRLIPRDRVGG+ R R
Sbjct:   10 KVTFKVTLTSDPKLPFRVFSVPEEAPFTAVLKFAAEEFKVPAQTSAIITNDGVGINPQQIAGNVFLKHGSELRLIPRDRVGGISRAR 96          
BLAST of EWM21624.1 vs. NCBI_GenBank
Match: gi|675175039|ref|XP_008896404.1| (ubiquitin-fold modifier 1 [Phytophthora parasitica INRA-310] >gi|568104118|gb|ETN18775.1| ubiquitin-fold modifier 1 [Phytophthora parasitica INRA-310])

HSP 1 Score: 155.606 bits (392), Expect = 5.853e-47
Identity = 72/88 (81.82%), Postives = 81/88 (92.05%), Query Frame = 0
Query:   17 GVDASPKVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVGG 104
            G+  + KVTFKVTLTSDPKLP+RVV+VPE APFTAVLKYVAEEF VPA TSA+ITNDG+GINP+QSAGNV +KHG+ELRLIPRDRVGG
Sbjct:   10 GLTPAAKVTFKVTLTSDPKLPYRVVNVPEQAPFTAVLKYVAEEFHVPAATSAIITNDGIGINPSQSAGNVFLKHGSELRLIPRDRVGG 97          
BLAST of EWM21624.1 vs. NCBI_GenBank
Match: gi|302782407|ref|XP_002972977.1| (hypothetical protein SELMODRAFT_413335 [Selaginella moellendorffii] >gi|302823491|ref|XP_002993398.1| hypothetical protein SELMODRAFT_163038 [Selaginella moellendorffii] >gi|300138829|gb|EFJ05583.1| hypothetical protein SELMODRAFT_163038 [Selaginella moellendorffii] >gi|300159578|gb|EFJ26198.1| hypothetical protein SELMODRAFT_413335 [Selaginella moellendorffii])

HSP 1 Score: 154.836 bits (390), Expect = 1.164e-46
Identity = 71/81 (87.65%), Postives = 79/81 (97.53%), Query Frame = 0
Query:   23 KVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVG 103
            KVTFKVTLTSDPKLP++V+SVPE+APFTAVLKYVAEEF+VPAQTSA+ITNDGVGINP QSAGNV +KHG+ELRLIPRDRVG
Sbjct:   26 KVTFKVTLTSDPKLPYKVLSVPEEAPFTAVLKYVAEEFKVPAQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVG 106          
BLAST of EWM21624.1 vs. NCBI_GenBank
Match: gi|75107765|sp|Q5PU89.1|UFM1_CHLIN (RecName: Full=Ubiquitin-fold modifier 1; AltName: Full=Protein PR46A; Flags: Precursor >gi|56112391|gb|AAV71156.1| PR46a [Chlamydomonas incerta])

HSP 1 Score: 154.451 bits (389), Expect = 1.721e-46
Identity = 71/82 (86.59%), Postives = 78/82 (95.12%), Query Frame = 0
Query:   23 KVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVGG 104
            KVTFKVTLTSDPKLPFRV SVPE+APFTAVLK+ AEEF+VPAQTSA+ITNDGVGINP Q+AGNV +KHG+ELRLIPRDRVGG
Sbjct:   13 KVTFKVTLTSDPKLPFRVFSVPEEAPFTAVLKFAAEEFKVPAQTSAIITNDGVGINPQQTAGNVFLKHGSELRLIPRDRVGG 94          
BLAST of EWM21624.1 vs. NCBI_GenBank
Match: gi|675175041|ref|XP_008896405.1| (ubiquitin-fold modifier 1 [Phytophthora parasitica INRA-310] >gi|566013001|gb|ETI35912.1| ubiquitin-fold modifier 1 [Phytophthora parasitica P1569] >gi|567950379|gb|ETK76092.1| ubiquitin-fold modifier 1 [Phytophthora parasitica] >gi|567979048|gb|ETL29530.1| ubiquitin-fold modifier 1 [Phytophthora parasitica] >gi|568008539|gb|ETL82756.1| ubiquitin-fold modifier 1 [Phytophthora parasitica] >gi|568038466|gb|ETM35996.1| ubiquitin-fold modifier 1 [Phytophthora parasitica] >gi|568104119|gb|ETN18776.1| ubiquitin-fold modifier 1 [Phytophthora parasitica INRA-310])

HSP 1 Score: 153.68 bits (387), Expect = 2.322e-46
Identity = 71/82 (86.59%), Postives = 78/82 (95.12%), Query Frame = 0
Query:   23 KVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVGG 104
            KVTFKVTLTSDPKLP+RVV+VPE APFTAVLKYVAEEF VPA TSA+ITNDG+GINP+QSAGNV +KHG+ELRLIPRDRVGG
Sbjct:    4 KVTFKVTLTSDPKLPYRVVNVPEQAPFTAVLKYVAEEFHVPAATSAIITNDGIGINPSQSAGNVFLKHGSELRLIPRDRVGG 85          
BLAST of EWM21624.1 vs. NCBI_GenBank
Match: gi|570316676|gb|ETO64624.1| (ubiquitin-fold modifier 1 [Phytophthora parasitica P1976] >gi|570940466|gb|ETP05723.1| ubiquitin-fold modifier 1 [Phytophthora parasitica CJ01A1] >gi|570970730|gb|ETP33849.1| ubiquitin-fold modifier 1 [Phytophthora parasitica P10297])

HSP 1 Score: 154.836 bits (390), Expect = 2.966e-46
Identity = 72/85 (84.71%), Postives = 80/85 (94.12%), Query Frame = 0
Query:   20 ASPKVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVGG 104
            A+ KVTFKVTLTSDPKLP+RVV+VPE APFTAVLKYVAEEF VPA TSA+ITNDG+GINP+QSAGNV +KHG+ELRLIPRDRVGG
Sbjct:   42 AAAKVTFKVTLTSDPKLPYRVVNVPEQAPFTAVLKYVAEEFHVPAATSAIITNDGIGINPSQSAGNVFLKHGSELRLIPRDRVGG 126          
BLAST of EWM21624.1 vs. NCBI_GenBank
Match: gi|297592106|gb|ADI46891.1| (PR46af [Volvox carteri f. nagariensis] >gi|297592179|gb|ADI46963.1| PR46am [Volvox carteri f. nagariensis])

HSP 1 Score: 152.14 bits (383), Expect = 9.270e-46
Identity = 70/81 (86.42%), Postives = 77/81 (95.06%), Query Frame = 0
Query:   23 KVTFKVTLTSDPKLPFRVVSVPEDAPFTAVLKYVAEEFRVPAQTSAMITNDGVGINPAQSAGNVLIKHGTELRLIPRDRVG 103
            KVTFKVTLTSDPKLPFRV SVPE+APFTAVLK+ AEEF+VPAQTSA+ITNDGVGINP Q+AGNV +KHG+ELRLIPRDRVG
Sbjct:   10 KVTFKVTLTSDPKLPFRVFSVPEEAPFTAVLKFAAEEFKVPAQTSAIITNDGVGINPKQTAGNVFLKHGSELRLIPRDRVG 90          
The following BLAST results are available for this feature:
BLAST of EWM21624.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101879|gb|EWM21624.1|2.088e-85100.00Ubiquitin-fold modifier 1 [Nannochloropsis gaditan... [more]
gi|294846027|gb|ADF43185.1|2.066e-4883.91PR46am [Chlamydomonas reinhardtii][more]
gi|669140954|ref|XP_008606045.1|4.174e-4886.90ubiquitin-fold modifier 1 [Saprolegnia diclina VS2... [more]
gi|159477074|ref|XP_001696636.1|7.292e-4883.91ubiquitin-fold modifier 1 [Chlamydomonas reinhardt... [more]
gi|675175039|ref|XP_008896404.1|5.853e-4781.82ubiquitin-fold modifier 1 [Phytophthora parasitica... [more]
gi|302782407|ref|XP_002972977.1|1.164e-4687.65hypothetical protein SELMODRAFT_413335 [Selaginell... [more]
gi|75107765|sp|Q5PU89.1|UFM1_CHLIN1.721e-4686.59RecName: Full=Ubiquitin-fold modifier 1; AltName: ... [more]
gi|675175041|ref|XP_008896405.1|2.322e-4686.59ubiquitin-fold modifier 1 [Phytophthora parasitica... [more]
gi|570316676|gb|ETO64624.1|2.966e-4684.71ubiquitin-fold modifier 1 [Phytophthora parasitica... [more]
gi|297592106|gb|ADI46891.1|9.270e-4686.42PR46af [Volvox carteri f. nagariensis] >gi|2975921... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9133rna9133Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications