EWM21569.1, cds9038 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21569.1 vs. NCBI_GenBank
Match: gi|585101824|gb|EWM21569.1| (Tetratricopeptide-like helical [Nannochloropsis gaditana]) HSP 1 Score: 800.431 bits (2066), Expect = 0.000e+0 Identity = 401/401 (100.00%), Postives = 401/401 (100.00%), Query Frame = 0 Query: 1 MGLGGPPQGPGRCGLYPQIVRRMGRGGNDLVGQERPGGRGIQERKRQWEGRGRPCPHRAGQVSGRTGLECVGEGELVRPHVRRRRPALPIPPGAWPPEPDAPRKGPPAPGPLGMGDRHVGRIGALRRGSGPGGGIMDPPPLQCWQGPGDLVYVPPGWKSMRVHVGDVVMVEGEGVRGGGVRARGGEKEDVEDRIFHYHAEALARHPEDVESLIAAGEAYARQSLRATTTVNRDSLWRESFMCVHTAVNLRPCDPTTHLVAAQVLLANRSASHDENHRQAKAIIHRAEETFFTLSSPSCPFPDLPRERVAALLASARLRFAQFFLWIGDETEAKRAVAEVLALRPTYLEAHQLLVLVLKKSGRDREAREAMHLALIALGPRGRERSVIEAFESLLEPQKDCR 401 MGLGGPPQGPGRCGLYPQIVRRMGRGGNDLVGQERPGGRGIQERKRQWEGRGRPCPHRAGQVSGRTGLECVGEGELVRPHVRRRRPALPIPPGAWPPEPDAPRKGPPAPGPLGMGDRHVGRIGALRRGSGPGGGIMDPPPLQCWQGPGDLVYVPPGWKSMRVHVGDVVMVEGEGVRGGGVRARGGEKEDVEDRIFHYHAEALARHPEDVESLIAAGEAYARQSLRATTTVNRDSLWRESFMCVHTAVNLRPCDPTTHLVAAQVLLANRSASHDENHRQAKAIIHRAEETFFTLSSPSCPFPDLPRERVAALLASARLRFAQFFLWIGDETEAKRAVAEVLALRPTYLEAHQLLVLVLKKSGRDREAREAMHLALIALGPRGRERSVIEAFESLLEPQKDCR Sbjct: 1 MGLGGPPQGPGRCGLYPQIVRRMGRGGNDLVGQERPGGRGIQERKRQWEGRGRPCPHRAGQVSGRTGLECVGEGELVRPHVRRRRPALPIPPGAWPPEPDAPRKGPPAPGPLGMGDRHVGRIGALRRGSGPGGGIMDPPPLQCWQGPGDLVYVPPGWKSMRVHVGDVVMVEGEGVRGGGVRARGGEKEDVEDRIFHYHAEALARHPEDVESLIAAGEAYARQSLRATTTVNRDSLWRESFMCVHTAVNLRPCDPTTHLVAAQVLLANRSASHDENHRQAKAIIHRAEETFFTLSSPSCPFPDLPRERVAALLASARLRFAQFFLWIGDETEAKRAVAEVLALRPTYLEAHQLLVLVLKKSGRDREAREAMHLALIALGPRGRERSVIEAFESLLEPQKDCR 401
BLAST of EWM21569.1 vs. NCBI_GenBank
Match: gi|299115929|emb|CBN75936.1| (TPR repeat-containing protein [Ectocarpus siliculosus]) HSP 1 Score: 62.7734 bits (151), Expect = 2.131e-7 Identity = 71/274 (25.91%), Postives = 122/274 (44.53%), Query Frame = 0 Query: 137 DPPPLQCWQGPGDLVYVPPGWKSMRVHVGDVVMVEGEGVRGGGVRARGGEKEDVEDR-------------IFHYHAEALARHPEDVESLIAAGEAY----ARQSLRATTTVNRDSLWRESFMCVHTAVNLRPCDPTTHLVAAQVLLANRSASHDENHRQAKAIIHRAEETFFTLSSPSCPFPDLPRERVAALLASARLRFAQFFLWIGDETEAKRAVAE-VLALRPTYLEAHQLLVLVLKKSGRDREAREAMHLALIALGPRGRERSVIEAFES 392 + PP++C Q GDL YVP W+ M +++G+ + V G+ V G R + G E ++ R + H AL E V+ + A ARQ L A T++ S + A+ RP P TH++ A+ L ++ +E A+ +I A + F + P PD + LA +L A+FFL D +A+ + L+L P + +A L + + G++ A+ + A+I + R + ++FE+ Sbjct: 19 ETPPMECIQNAGDLFYVPANWRHMTLNIGESIGVGGQAVYSGEARLQDG-LELLQQRPGDPELLHAIGVGLAHRGISALEYEGEGVKIEMDHSTAMDMIRARQMLPAKQTIDLAS------ENLRKAIADRPGCPETHIILAETL--HKGGDGEE----AEKVIEEAWKIFSRDALPDG-VPD-------STLAVVQLNLARFFLQAQDGDKAEAYLRNGTLSLLPEHGDALADLAVAMAMQGKENPAK--LEQAVIMIEKAERNGASGKSFEN 269 The following BLAST results are available for this feature:
BLAST of EWM21569.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 2
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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