EWM21563.1, cds9020 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21563.1 vs. NCBI_GenBank
Match: gi|585101818|gb|EWM21563.1| (lysyl-trna synthetase [Nannochloropsis gaditana]) HSP 1 Score: 214.157 bits (544), Expect = 2.654e-70 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
Query: 1 MADESNSNGGEPLSKNALKKKLKAEALAKAKAEKLAAAPAPATRSKAGADGGDNEEELTPSQYFEARLRMIAEMEAAGTSPYPHKFHVTQGIPAFVDAYAGLESGRK 107
MADESNSNGGEPLSKNALKKKLKAEALAKAKAEKLAAAPAPATRSKAGADGGDNEEELTPSQYFEARLRMIAEMEAAGTSPYPHKFHVTQGIPAFVDAYAGLESGRK
Sbjct: 1 MADESNSNGGEPLSKNALKKKLKAEALAKAKAEKLAAAPAPATRSKAGADGGDNEEELTPSQYFEARLRMIAEMEAAGTSPYPHKFHVTQGIPAFVDAYAGLESGRK 107
BLAST of EWM21563.1 vs. NCBI_GenBank
Match: gi|1012275639|ref|XP_015985559.1| (PREDICTED: lysine--tRNA ligase isoform X2 [Rousettus aegyptiacus]) HSP 1 Score: 85.1149 bits (209), Expect = 3.889e-17 Identity = 49/113 (43.36%), Postives = 66/113 (58.41%), Query Frame = 0
Query: 1 MADESNSNGGEP-LSKNALKKKLKAE-------ALAKAKAEKLAAAPAPATRSKAGADGGDNEEELTPSQYFEARLRMIAEMEAAGTSPYPHKFHVTQGIPAFVDAYAGLESG 105
+A E N GGEP LSKN LK++LKAE A K +EKL+ A A AT D G EE L P+QY++ R + I +++ +G PYPHKFHV + F+ Y+ L+ G
Sbjct: 5 LAGEVNVYGGEPKLSKNELKRRLKAEKKVAEKEAKQKELSEKLSQANAAATNHTNDNDVGAEEESLDPNQYYKIRSQAIHQLKISGEDPYPHKFHVDVSLTHFIQEYSHLQPG 117
BLAST of EWM21563.1 vs. NCBI_GenBank
Match: gi|998498795|ref|XP_015509252.1| (PREDICTED: lysine--tRNA ligase isoform X2 [Neodiprion lecontei]) HSP 1 Score: 84.3445 bits (207), Expect = 8.026e-17 Identity = 45/106 (42.45%), Postives = 70/106 (66.04%), Query Frame = 0
Query: 1 MADESNSNGGEPLSKNALKKKLKAEALAKAKAEK-LAAAPAPATRSKAGADGGDNEEELTPSQYFEARLRMIAEMEAAGTSPYPHKFHVTQGIPAFVDAYAGLESG 105
MAD ++ GE +SKN LK++LKAE AK KAEK AAA A K EEE++P++YF+ R + +++++AAG PYPHKFHV+ + F+++++ ++ G
Sbjct: 1 MADTTD---GEKVSKNELKRRLKAEQKAKEKAEKETAAAEVKAASVKDKKPSLKEEEEISPNEYFKLRTQAVSQLKAAGQHPYPHKFHVSTSLEIFIESFSHIKEG 103
BLAST of EWM21563.1 vs. NCBI_GenBank
Match: gi|817059383|ref|XP_012251198.1| (lysine--tRNA ligase isoform X2 [Athalia rosae]) HSP 1 Score: 82.4185 bits (202), Expect = 3.523e-16 Identity = 41/105 (39.05%), Postives = 66/105 (62.86%), Query Frame = 0
Query: 1 MADESNSNGGEPLSKNALKKKLKAEALAKAKAEKLAAAPAPATRSKAGADGGDNEEELTPSQYFEARLRMIAEMEAAGTSPYPHKFHVTQGIPAFVDAYAGLESG 105
MAD++ GE LSKN +K++LKAE K KA K A S+ A NEEE++P +YF+ R + ++++++ G PYPHKFHV+ + AF++ ++ ++ G
Sbjct: 1 MADQA----GEKLSKNEIKRRLKAEQKVKEKAVKEAERATANANSEKKATTTVNEEEISPHEYFKIRTQAVSQLKSLGDHPYPHKFHVSTSLEAFIEQFSHIQDG 101
BLAST of EWM21563.1 vs. NCBI_GenBank
Match: gi|673035402|ref|XP_008871662.1| (lysine-tRNA ligase [Aphanomyces invadans] >gi|574472882|gb|ETV99886.1| lysine-tRNA ligase [Aphanomyces invadans]) HSP 1 Score: 79.7221 bits (195), Expect = 3.476e-15 Identity = 50/101 (49.50%), Postives = 67/101 (66.34%), Query Frame = 0
Query: 9 GGEPLSKNALKKKLK----AEALAKAKAEKLAAAPAPATRSKAGADGGDNEEELTPSQYFEARLRMIAEMEAAGTSPYPHKFHVTQGIPAFVDAYAGLESG 105
G E LSKN LK++LK A+A A+ +A K AAA A + A GGD ++EL P+ YFE R +++AE+EA G +PYPHKF VT +P FV Y G+E+G
Sbjct: 24 GEEKLSKNELKRRLKLEKAAQAKAEKEAAKAAAATAAGPKKATSAAGGDGDDELDPTAYFENRTKLLAELEAEGVNPYPHKFSVTISVPDFVKTYHGVEAG 124
BLAST of EWM21563.1 vs. NCBI_GenBank
Match: gi|1183339266|gb|ORX68245.1| (lysyl-tRNA synthetase [Linderina pennispora]) HSP 1 Score: 78.1814 bits (191), Expect = 1.206e-14 Identity = 47/96 (48.96%), Postives = 61/96 (63.54%), Query Frame = 0
Query: 10 GEPLSKNALKKKLKAEALAKAKAEKLAAAPAPATRSKAGADGGDNEEELTPSQYFEARLRMIAEMEAAGTSPYPHKFHVTQGIPAFVDAYAGLESG 105
GE +SK+ LK+++K KAEK AAAP A K D EEEL P+QYFE R + I +M A G PYPHKFHVT +PAF++ Y+ L++G
Sbjct: 17 GEKVSKSELKRRIKLREKEAKKAEKAAAAPKAAKAEKTDKSAEDGEEELNPNQYFEIRSKAIEKMRAEGPYPYPHKFHVTMSVPAFIEKYSTLKAG 112
BLAST of EWM21563.1 vs. NCBI_GenBank
Match: gi|923652120|ref|XP_013644762.1| (PREDICTED: lysine--tRNA ligase-like [Brassica napus]) HSP 1 Score: 77.0258 bits (188), Expect = 2.556e-14 Identity = 43/101 (42.57%), Postives = 64/101 (63.37%), Query Frame = 0
Query: 6 NSNGGEPLSKNALKKKLKAEALAKAKAEKLAAAP-APATRSKAGADGGDNEEELTPSQYFEARLRMIAEMEAAGTSPYPHKFHVTQGIPAFVDAYAGLESG 105
+S G SKNALKK+LK + + + +K AP A + +S A AD +E++ P+QYFE RL+ +A +A G +PYPHKF V+ IP +++ Y GL +G
Sbjct: 22 SSTGDGARSKNALKKELKMKQREEERKQKAKQAPKASSQKSVASAD----DEDMDPTQYFENRLKYLAAEKAKGENPYPHKFAVSMSIPEYIEKYGGLNNG 118
BLAST of EWM21563.1 vs. NCBI_GenBank
Match: gi|828202326|ref|XP_012555564.1| (PREDICTED: lysine--tRNA ligase-like [Hydra vulgaris]) HSP 1 Score: 73.559 bits (179), Expect = 4.909e-13 Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 0
Query: 11 EPLSKNALKKKLKAEALAKAKAEKLAAAPAPATRSKAGADGGDNEEE---LTPSQYFEARLRMIAEMEAAGTSPYPHKFHVTQGIPAFVDAYAGLESG 105
E LSKN LK++LKAE AK K EKLA + ++ K ++ G E+ L P+QY++ R + +A + G +PYPHKFHV+ + F++ Y +ESG
Sbjct: 44 EQLSKNELKRRLKAEQKAKEKLEKLAIKSSESSDVKPKSEEGGVVEDEEILDPNQYYKIRQQSVATWKKKGENPYPHKFHVSISLTEFIEKYTNIESG 141
BLAST of EWM21563.1 vs. NCBI_GenBank
Match: gi|1035916195|gb|OAY45787.1| (hypothetical protein MANES_07G091500 [Manihot esculenta]) HSP 1 Score: 72.7886 bits (177), Expect = 9.893e-13 Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = 0
Query: 1 MADESNSNGGEPLSKNALKKKLKAE---ALAKAKAEKLAAAPAPATRSKAGADGGDNEEELTPSQYFEARLRMIAEMEAAGTSPYPHKFHVTQGIPAFVDAYAGLESG 105
M ES ++GGE +SKNA KK+LK + + K E+ A A T + ++E++ P+QY+E RL+ +A +A G +PYPHKF V+ I F++ Y GL +G
Sbjct: 17 MDAESTASGGETVSKNARKKELKNKQREEERRRKEEEKARQAAERTSTHVQKPAAADDEDMDPTQYYENRLKYLASQKAEGKNPYPHKFSVSMSIVEFIEKYGGLSNG 124
BLAST of EWM21563.1 vs. NCBI_GenBank
Match: gi|635358901|emb|CCI11409.1| (unnamed protein product [Albugo candida] >gi|635370255|emb|CCI41553.1| unnamed protein product [Albugo candida]) HSP 1 Score: 72.0182 bits (175), Expect = 1.530e-12 Identity = 50/108 (46.30%), Postives = 64/108 (59.26%), Query Frame = 0
Query: 3 DESNSNGGEPLSKNALKKKLKAEALAKAKAEKLAAAPA-----PATRSKAGADGGDNEEELTPSQYFEARLRMIAEMEAAGTSPYPHKFHVTQGIPAFVDAYAGLESG 105
+E + EP SKN LK++LKAE AK KAEK A A PA A D EEEL P+ YF R +M+ +ME G +PYPHKFHV+ +P F + + GLE+G
Sbjct: 21 NEGRTGANEPPSKNELKRRLKAEKAAKIKAEKAAKKTAEALSKPANAPSNTATHADLEEELDPTAYFSNREKMLIDMEKEGINPYPHKFHVSISLPEFHEQFNGLENG 128 The following BLAST results are available for this feature:
BLAST of EWM21563.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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