EWM21563.1, cds9020 (CDS) Nannochloropsis gaditana

Overview
NameEWM21563.1
Unique Namecds9020
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:201664..201732 -
Alignment locationKK037251.1:201236..201490 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21563.1
Productlysyl-trna synthetase
Orig transcript idgnl|cribi|Naga_100012g1.1895.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:201664..201732 -
KK037251.1supercontigKK037251.1:201236..201490 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006139nucleobase-containing compound metabolic process
GO:0006418tRNA aminoacylation for protein translation
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0005524ATP binding
GO:0000166nucleotide binding
GO:0004812aminoacyl-tRNA ligase activity
Vocabulary: INTERPRO
TermDefinition
IPR018150aa-tRNA-synt_II-like
IPR012340NA-bd_OB-fold
Homology
BLAST of EWM21563.1 vs. NCBI_GenBank
Match: gi|585101818|gb|EWM21563.1| (lysyl-trna synthetase [Nannochloropsis gaditana])

HSP 1 Score: 214.157 bits (544), Expect = 2.654e-70
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
Query:    1 MADESNSNGGEPLSKNALKKKLKAEALAKAKAEKLAAAPAPATRSKAGADGGDNEEELTPSQYFEARLRMIAEMEAAGTSPYPHKFHVTQGIPAFVDAYAGLESGRK 107
            MADESNSNGGEPLSKNALKKKLKAEALAKAKAEKLAAAPAPATRSKAGADGGDNEEELTPSQYFEARLRMIAEMEAAGTSPYPHKFHVTQGIPAFVDAYAGLESGRK
Sbjct:    1 MADESNSNGGEPLSKNALKKKLKAEALAKAKAEKLAAAPAPATRSKAGADGGDNEEELTPSQYFEARLRMIAEMEAAGTSPYPHKFHVTQGIPAFVDAYAGLESGRK 107          
BLAST of EWM21563.1 vs. NCBI_GenBank
Match: gi|1012275639|ref|XP_015985559.1| (PREDICTED: lysine--tRNA ligase isoform X2 [Rousettus aegyptiacus])

HSP 1 Score: 85.1149 bits (209), Expect = 3.889e-17
Identity = 49/113 (43.36%), Postives = 66/113 (58.41%), Query Frame = 0
Query:    1 MADESNSNGGEP-LSKNALKKKLKAE-------ALAKAKAEKLAAAPAPATRSKAGADGGDNEEELTPSQYFEARLRMIAEMEAAGTSPYPHKFHVTQGIPAFVDAYAGLESG 105
            +A E N  GGEP LSKN LK++LKAE       A  K  +EKL+ A A AT      D G  EE L P+QY++ R + I +++ +G  PYPHKFHV   +  F+  Y+ L+ G
Sbjct:    5 LAGEVNVYGGEPKLSKNELKRRLKAEKKVAEKEAKQKELSEKLSQANAAATNHTNDNDVGAEEESLDPNQYYKIRSQAIHQLKISGEDPYPHKFHVDVSLTHFIQEYSHLQPG 117          
BLAST of EWM21563.1 vs. NCBI_GenBank
Match: gi|998498795|ref|XP_015509252.1| (PREDICTED: lysine--tRNA ligase isoform X2 [Neodiprion lecontei])

HSP 1 Score: 84.3445 bits (207), Expect = 8.026e-17
Identity = 45/106 (42.45%), Postives = 70/106 (66.04%), Query Frame = 0
Query:    1 MADESNSNGGEPLSKNALKKKLKAEALAKAKAEK-LAAAPAPATRSKAGADGGDNEEELTPSQYFEARLRMIAEMEAAGTSPYPHKFHVTQGIPAFVDAYAGLESG 105
            MAD ++   GE +SKN LK++LKAE  AK KAEK  AAA   A   K        EEE++P++YF+ R + +++++AAG  PYPHKFHV+  +  F+++++ ++ G
Sbjct:    1 MADTTD---GEKVSKNELKRRLKAEQKAKEKAEKETAAAEVKAASVKDKKPSLKEEEEISPNEYFKLRTQAVSQLKAAGQHPYPHKFHVSTSLEIFIESFSHIKEG 103          
BLAST of EWM21563.1 vs. NCBI_GenBank
Match: gi|817059383|ref|XP_012251198.1| (lysine--tRNA ligase isoform X2 [Athalia rosae])

HSP 1 Score: 82.4185 bits (202), Expect = 3.523e-16
Identity = 41/105 (39.05%), Postives = 66/105 (62.86%), Query Frame = 0
Query:    1 MADESNSNGGEPLSKNALKKKLKAEALAKAKAEKLAAAPAPATRSKAGADGGDNEEELTPSQYFEARLRMIAEMEAAGTSPYPHKFHVTQGIPAFVDAYAGLESG 105
            MAD++    GE LSKN +K++LKAE   K KA K A        S+  A    NEEE++P +YF+ R + ++++++ G  PYPHKFHV+  + AF++ ++ ++ G
Sbjct:    1 MADQA----GEKLSKNEIKRRLKAEQKVKEKAVKEAERATANANSEKKATTTVNEEEISPHEYFKIRTQAVSQLKSLGDHPYPHKFHVSTSLEAFIEQFSHIQDG 101          
BLAST of EWM21563.1 vs. NCBI_GenBank
Match: gi|673035402|ref|XP_008871662.1| (lysine-tRNA ligase [Aphanomyces invadans] >gi|574472882|gb|ETV99886.1| lysine-tRNA ligase [Aphanomyces invadans])

HSP 1 Score: 79.7221 bits (195), Expect = 3.476e-15
Identity = 50/101 (49.50%), Postives = 67/101 (66.34%), Query Frame = 0
Query:    9 GGEPLSKNALKKKLK----AEALAKAKAEKLAAAPAPATRSKAGADGGDNEEELTPSQYFEARLRMIAEMEAAGTSPYPHKFHVTQGIPAFVDAYAGLESG 105
            G E LSKN LK++LK    A+A A+ +A K AAA A   +    A GGD ++EL P+ YFE R +++AE+EA G +PYPHKF VT  +P FV  Y G+E+G
Sbjct:   24 GEEKLSKNELKRRLKLEKAAQAKAEKEAAKAAAATAAGPKKATSAAGGDGDDELDPTAYFENRTKLLAELEAEGVNPYPHKFSVTISVPDFVKTYHGVEAG 124          
BLAST of EWM21563.1 vs. NCBI_GenBank
Match: gi|1183339266|gb|ORX68245.1| (lysyl-tRNA synthetase [Linderina pennispora])

HSP 1 Score: 78.1814 bits (191), Expect = 1.206e-14
Identity = 47/96 (48.96%), Postives = 61/96 (63.54%), Query Frame = 0
Query:   10 GEPLSKNALKKKLKAEALAKAKAEKLAAAPAPATRSKAGADGGDNEEELTPSQYFEARLRMIAEMEAAGTSPYPHKFHVTQGIPAFVDAYAGLESG 105
            GE +SK+ LK+++K       KAEK AAAP  A   K      D EEEL P+QYFE R + I +M A G  PYPHKFHVT  +PAF++ Y+ L++G
Sbjct:   17 GEKVSKSELKRRIKLREKEAKKAEKAAAAPKAAKAEKTDKSAEDGEEELNPNQYFEIRSKAIEKMRAEGPYPYPHKFHVTMSVPAFIEKYSTLKAG 112          
BLAST of EWM21563.1 vs. NCBI_GenBank
Match: gi|923652120|ref|XP_013644762.1| (PREDICTED: lysine--tRNA ligase-like [Brassica napus])

HSP 1 Score: 77.0258 bits (188), Expect = 2.556e-14
Identity = 43/101 (42.57%), Postives = 64/101 (63.37%), Query Frame = 0
Query:    6 NSNGGEPLSKNALKKKLKAEALAKAKAEKLAAAP-APATRSKAGADGGDNEEELTPSQYFEARLRMIAEMEAAGTSPYPHKFHVTQGIPAFVDAYAGLESG 105
            +S G    SKNALKK+LK +   + + +K   AP A + +S A AD    +E++ P+QYFE RL+ +A  +A G +PYPHKF V+  IP +++ Y GL +G
Sbjct:   22 SSTGDGARSKNALKKELKMKQREEERKQKAKQAPKASSQKSVASAD----DEDMDPTQYFENRLKYLAAEKAKGENPYPHKFAVSMSIPEYIEKYGGLNNG 118          
BLAST of EWM21563.1 vs. NCBI_GenBank
Match: gi|828202326|ref|XP_012555564.1| (PREDICTED: lysine--tRNA ligase-like [Hydra vulgaris])

HSP 1 Score: 73.559 bits (179), Expect = 4.909e-13
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 0
Query:   11 EPLSKNALKKKLKAEALAKAKAEKLAAAPAPATRSKAGADGGDNEEE---LTPSQYFEARLRMIAEMEAAGTSPYPHKFHVTQGIPAFVDAYAGLESG 105
            E LSKN LK++LKAE  AK K EKLA   + ++  K  ++ G   E+   L P+QY++ R + +A  +  G +PYPHKFHV+  +  F++ Y  +ESG
Sbjct:   44 EQLSKNELKRRLKAEQKAKEKLEKLAIKSSESSDVKPKSEEGGVVEDEEILDPNQYYKIRQQSVATWKKKGENPYPHKFHVSISLTEFIEKYTNIESG 141          
BLAST of EWM21563.1 vs. NCBI_GenBank
Match: gi|1035916195|gb|OAY45787.1| (hypothetical protein MANES_07G091500 [Manihot esculenta])

HSP 1 Score: 72.7886 bits (177), Expect = 9.893e-13
Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = 0
Query:    1 MADESNSNGGEPLSKNALKKKLKAE---ALAKAKAEKLAAAPAPATRSKAGADGGDNEEELTPSQYFEARLRMIAEMEAAGTSPYPHKFHVTQGIPAFVDAYAGLESG 105
            M  ES ++GGE +SKNA KK+LK +      + K E+ A   A  T +        ++E++ P+QY+E RL+ +A  +A G +PYPHKF V+  I  F++ Y GL +G
Sbjct:   17 MDAESTASGGETVSKNARKKELKNKQREEERRRKEEEKARQAAERTSTHVQKPAAADDEDMDPTQYYENRLKYLASQKAEGKNPYPHKFSVSMSIVEFIEKYGGLSNG 124          
BLAST of EWM21563.1 vs. NCBI_GenBank
Match: gi|635358901|emb|CCI11409.1| (unnamed protein product [Albugo candida] >gi|635370255|emb|CCI41553.1| unnamed protein product [Albugo candida])

HSP 1 Score: 72.0182 bits (175), Expect = 1.530e-12
Identity = 50/108 (46.30%), Postives = 64/108 (59.26%), Query Frame = 0
Query:    3 DESNSNGGEPLSKNALKKKLKAEALAKAKAEKLAAAPA-----PATRSKAGADGGDNEEELTPSQYFEARLRMIAEMEAAGTSPYPHKFHVTQGIPAFVDAYAGLESG 105
            +E  +   EP SKN LK++LKAE  AK KAEK A   A     PA      A   D EEEL P+ YF  R +M+ +ME  G +PYPHKFHV+  +P F + + GLE+G
Sbjct:   21 NEGRTGANEPPSKNELKRRLKAEKAAKIKAEKAAKKTAEALSKPANAPSNTATHADLEEELDPTAYFSNREKMLIDMEKEGINPYPHKFHVSISLPEFHEQFNGLENG 128          
The following BLAST results are available for this feature:
BLAST of EWM21563.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101818|gb|EWM21563.1|2.654e-70100.00lysyl-trna synthetase [Nannochloropsis gaditana][more]
gi|1012275639|ref|XP_015985559.1|3.889e-1743.36PREDICTED: lysine--tRNA ligase isoform X2 [Rousett... [more]
gi|998498795|ref|XP_015509252.1|8.026e-1742.45PREDICTED: lysine--tRNA ligase isoform X2 [Neodipr... [more]
gi|817059383|ref|XP_012251198.1|3.523e-1639.05lysine--tRNA ligase isoform X2 [Athalia rosae][more]
gi|673035402|ref|XP_008871662.1|3.476e-1549.50lysine-tRNA ligase [Aphanomyces invadans] >gi|5744... [more]
gi|1183339266|gb|ORX68245.1|1.206e-1448.96lysyl-tRNA synthetase [Linderina pennispora][more]
gi|923652120|ref|XP_013644762.1|2.556e-1442.57PREDICTED: lysine--tRNA ligase-like [Brassica napu... [more]
gi|828202326|ref|XP_012555564.1|4.909e-1341.84PREDICTED: lysine--tRNA ligase-like [Hydra vulgari... [more]
gi|1035916195|gb|OAY45787.1|9.893e-1338.89hypothetical protein MANES_07G091500 [Manihot escu... [more]
gi|635358901|emb|CCI11409.1|1.530e-1246.30unnamed protein product [Albugo candida] >gi|63537... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9050rna9050Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications