EWM21668.1, cds9006 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21668.1 vs. NCBI_GenBank
Match: gi|585101933|gb|EWM21668.1| (60s acidic ribosomal protein [Nannochloropsis gaditana]) HSP 1 Score: 227.254 bits (578), Expect = 5.012e-75 Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 Query: 1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYASLIEKAGGKLDKFMGAPGAGGGGGGGAGAPAAAAAEGAAPEAKKEKKEEEEEADLGAGNMFGGDGY 121 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYASLIEKAGGKLDKFMGAPGAGGGGGGGAGAPAAAAAEGAAPEAKKEKKEEEEEADLGAGNMFGGDGY Sbjct: 1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYASLIEKAGGKLDKFMGAPGAGGGGGGGAGAPAAAAAEGAAPEAKKEKKEEEEEADLGAGNMFGGDGY 121
BLAST of EWM21668.1 vs. NCBI_GenBank
Match: gi|298711916|emb|CBJ48603.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 72.7886 bits (177), Expect = 9.773e-14 Identity = 34/63 (53.97%), Postives = 50/63 (79.37%), Query Frame = 0 Query: 1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYASLIEKAGG 63 MSL+EL QK +MV+SL+ALLL+D+G ++AEN+ AV+ A+ N V AYYP L+A+++EK+ G Sbjct: 38 MSLSELPAPQKNDMVVSLAALLLEDAGSVLTAENISAVVAATKNEVPAYYPTLFAAMLEKSEG 100
BLAST of EWM21668.1 vs. NCBI_GenBank
Match: gi|1173932409|gb|OQR84398.1| (hypothetical protein ACHHYP_13424 [Achlya hypogyna]) HSP 1 Score: 71.2478 bits (173), Expect = 1.202e-13 Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 0 Query: 1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYASLIEKAGGKLDKFMGAPG 73 MS+A+LS AQK+E+ S++ LLL D+ V++SAEN++A + AS N VAAY P L+A IEK G K++K + P Sbjct: 1 MSIADLSAAQKQELATSVAVLLLTDAKVEVSAENINAALDASKNKVAAYLPTLFADAIEK-GLKVEKLLAGPS 72
BLAST of EWM21668.1 vs. NCBI_GenBank
Match: gi|813178546|ref|XP_012205742.1| (hypothetical protein SPRG_10789 [Saprolegnia parasitica CBS 223.65] >gi|641529418|gb|KDO23594.1| hypothetical protein SPRG_10789 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 68.9366 bits (167), Expect = 9.164e-13 Identity = 37/69 (53.62%), Postives = 51/69 (73.91%), Query Frame = 0 Query: 1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYASLIEKAGGKLDKFM 69 MS+A+LS AQK+E+ S++ LLL D+ VD+SAEN+ A + AS N VAAY P L+A IEK G K++K + Sbjct: 1 MSIADLSAAQKQELATSVAVLLLTDAKVDVSAENIVAALDASKNKVAAYLPTLFADAIEK-GLKVEKLL 68
BLAST of EWM21668.1 vs. NCBI_GenBank
Match: gi|678311361|emb|CDW88910.1| (60s acidic ribosomal protein p1 [Stylonychia lemnae]) HSP 1 Score: 65.4698 bits (158), Expect = 2.373e-11 Identity = 49/123 (39.84%), Postives = 72/123 (58.54%), Query Frame = 0 Query: 1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYASLI--EKAGGKLDKFMGAPGAGGGGGGGAGAPAAAAAEGAAPEAK--KEKKEEEEEADLGAGNMFGGD 119 + +++LS + +E+ + +ALLL D G++++ E L VIKASGN V AY+PAL+A + + L AP AGG G PA E A AK +E+K++EEEAD+ G +FG D Sbjct: 4 VDVSQLSKQEHDELTCAYAALLLHDDGLEITGEKLAKVIKASGNEVEAYWPALFAKALKGQNIEDLLSNLASAPSAGGAG------PAVTVQETTAVAAKPKEEEKKKEEEADVDMGGLFGDD 120
BLAST of EWM21668.1 vs. NCBI_GenBank
Match: gi|698797430|ref|XP_009831744.1| (hypothetical protein H257_07798 [Aphanomyces astaci] >gi|574113535|gb|ETV79025.1| hypothetical protein H257_07798 [Aphanomyces astaci]) HSP 1 Score: 63.1586 bits (152), Expect = 1.744e-10 Identity = 32/67 (47.76%), Postives = 49/67 (73.13%), Query Frame = 0 Query: 1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYASLIEKAGGKLDK 67 MS+A+ +PAQ +++ SL+ LLL D V++SA+NL + A+G TVA+Y P+LYA+ IE+ G K+ K Sbjct: 1 MSIADFTPAQTQDLATSLAVLLLHDLQVEVSADNLTEALSAAGVTVASYLPSLYANAIER-GLKVSK 66
BLAST of EWM21668.1 vs. NCBI_GenBank
Match: gi|403362817|gb|EJY81144.1| (60S acidic ribosomal protein p1, putative (macronuclear) [Oxytricha trifallax]) HSP 1 Score: 62.7734 bits (151), Expect = 2.434e-10 Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 0 Query: 1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYASLIEKAGGKLDKFMGAPGAGGGGGGGAGAPAAAAAEGAAPEAKKEKKEEEEEADLGAGNMFGGD 119 + +++LS + +E+V + SALLL D G+++++E L VIKASGN V AY+PA++A ++ G ++ + GGA AA AAP K E+K+ EE AD+ G +FG D Sbjct: 4 VDVSQLSKQEHDELVCAYSALLLHDDGLEITSEKLAKVIKASGNEVEAYWPAMFAKALK--GQDIEDLLS--NLASAPVGGAAVAEVAATAVAAP--KVEEKKVEEAADVDMGGLFGDD 116
BLAST of EWM21668.1 vs. NCBI_GenBank
Match: gi|673035778|ref|XP_008871850.1| (hypothetical protein H310_08026 [Aphanomyces invadans] >gi|574472289|gb|ETV99294.1| hypothetical protein H310_08026 [Aphanomyces invadans]) HSP 1 Score: 61.2326 bits (147), Expect = 1.039e-9 Identity = 31/67 (46.27%), Postives = 48/67 (71.64%), Query Frame = 0 Query: 1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYASLIEKAGGKLDK 67 MS+A+ +PAQ +++ SL+ LLL D V++SA+NL+ + A+G TV AY P LYA+ +E+ G K+ K Sbjct: 1 MSIADFTPAQTQDLATSLAVLLLHDLEVEVSADNLNEALSAAGVTVPAYLPTLYANAVER-GLKVSK 66
BLAST of EWM21668.1 vs. NCBI_GenBank
Match: gi|855305886|ref|XP_012895571.1| (uncharacterized protein [Blastocystis hominis] >gi|300121142|emb|CBK21523.2| unnamed protein product [Blastocystis hominis]) HSP 1 Score: 59.6918 bits (143), Expect = 4.137e-9 Identity = 26/49 (53.06%), Postives = 40/49 (81.63%), Query Frame = 0 Query: 6 LSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALY 54 +S +KEE+++SL+ALL D+ V++S +NLDAVIKASGN +A Y+ A++ Sbjct: 1 MSTIEKEELIVSLAALLCADAKVEVSKDNLDAVIKASGNKIAPYWTAVF 49
BLAST of EWM21668.1 vs. NCBI_GenBank
Match: gi|1032150039|gb|OAO13887.1| (60s acidic ribosomal protein [Blastocystis sp. ATCC 50177/Nand II]) HSP 1 Score: 58.151 bits (139), Expect = 1.839e-8 Identity = 23/50 (46.00%), Postives = 39/50 (78.00%), Query Frame = 0 Query: 6 LSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYA 55 ++PA+ +E+V SL+ L+L D+GV ++ EN+D ++KA+ NTV Y+P L+A Sbjct: 4 VAPAEHDEVVCSLACLILADAGVTVNTENIDKLLKATNNTVEPYWPMLFA 53 The following BLAST results are available for this feature:
BLAST of EWM21668.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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