EWM21668.1, cds9006 (CDS) Nannochloropsis gaditana

Overview
NameEWM21668.1
Unique Namecds9006
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:166191..166310 -
Alignment locationKK037251.1:165676..165914 -
Alignment locationKK037251.1:165430..165436 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21668.1
Product60s acidic ribosomal protein
Orig transcript idgnl|cribi|Naga_100611g1.5798.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:166191..166310 -
KK037251.1supercontigKK037251.1:165676..165914 -
KK037251.1supercontigKK037251.1:165430..165436 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Homology
BLAST of EWM21668.1 vs. NCBI_GenBank
Match: gi|585101933|gb|EWM21668.1| (60s acidic ribosomal protein [Nannochloropsis gaditana])

HSP 1 Score: 227.254 bits (578), Expect = 5.012e-75
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0
Query:    1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYASLIEKAGGKLDKFMGAPGAGGGGGGGAGAPAAAAAEGAAPEAKKEKKEEEEEADLGAGNMFGGDGY 121
            MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYASLIEKAGGKLDKFMGAPGAGGGGGGGAGAPAAAAAEGAAPEAKKEKKEEEEEADLGAGNMFGGDGY
Sbjct:    1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYASLIEKAGGKLDKFMGAPGAGGGGGGGAGAPAAAAAEGAAPEAKKEKKEEEEEADLGAGNMFGGDGY 121          
BLAST of EWM21668.1 vs. NCBI_GenBank
Match: gi|298711916|emb|CBJ48603.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 72.7886 bits (177), Expect = 9.773e-14
Identity = 34/63 (53.97%), Postives = 50/63 (79.37%), Query Frame = 0
Query:    1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYASLIEKAGG 63
            MSL+EL   QK +MV+SL+ALLL+D+G  ++AEN+ AV+ A+ N V AYYP L+A+++EK+ G
Sbjct:   38 MSLSELPAPQKNDMVVSLAALLLEDAGSVLTAENISAVVAATKNEVPAYYPTLFAAMLEKSEG 100          
BLAST of EWM21668.1 vs. NCBI_GenBank
Match: gi|1173932409|gb|OQR84398.1| (hypothetical protein ACHHYP_13424 [Achlya hypogyna])

HSP 1 Score: 71.2478 bits (173), Expect = 1.202e-13
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 0
Query:    1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYASLIEKAGGKLDKFMGAPG 73
            MS+A+LS AQK+E+  S++ LLL D+ V++SAEN++A + AS N VAAY P L+A  IEK G K++K +  P 
Sbjct:    1 MSIADLSAAQKQELATSVAVLLLTDAKVEVSAENINAALDASKNKVAAYLPTLFADAIEK-GLKVEKLLAGPS 72          
BLAST of EWM21668.1 vs. NCBI_GenBank
Match: gi|813178546|ref|XP_012205742.1| (hypothetical protein SPRG_10789 [Saprolegnia parasitica CBS 223.65] >gi|641529418|gb|KDO23594.1| hypothetical protein SPRG_10789 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 68.9366 bits (167), Expect = 9.164e-13
Identity = 37/69 (53.62%), Postives = 51/69 (73.91%), Query Frame = 0
Query:    1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYASLIEKAGGKLDKFM 69
            MS+A+LS AQK+E+  S++ LLL D+ VD+SAEN+ A + AS N VAAY P L+A  IEK G K++K +
Sbjct:    1 MSIADLSAAQKQELATSVAVLLLTDAKVDVSAENIVAALDASKNKVAAYLPTLFADAIEK-GLKVEKLL 68          
BLAST of EWM21668.1 vs. NCBI_GenBank
Match: gi|678311361|emb|CDW88910.1| (60s acidic ribosomal protein p1 [Stylonychia lemnae])

HSP 1 Score: 65.4698 bits (158), Expect = 2.373e-11
Identity = 49/123 (39.84%), Postives = 72/123 (58.54%), Query Frame = 0
Query:    1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYASLI--EKAGGKLDKFMGAPGAGGGGGGGAGAPAAAAAEGAAPEAK--KEKKEEEEEADLGAGNMFGGD 119
            + +++LS  + +E+  + +ALLL D G++++ E L  VIKASGN V AY+PAL+A  +  +     L     AP AGG G      PA    E  A  AK  +E+K++EEEAD+  G +FG D
Sbjct:    4 VDVSQLSKQEHDELTCAYAALLLHDDGLEITGEKLAKVIKASGNEVEAYWPALFAKALKGQNIEDLLSNLASAPSAGGAG------PAVTVQETTAVAAKPKEEEKKKEEEADVDMGGLFGDD 120          
BLAST of EWM21668.1 vs. NCBI_GenBank
Match: gi|698797430|ref|XP_009831744.1| (hypothetical protein H257_07798 [Aphanomyces astaci] >gi|574113535|gb|ETV79025.1| hypothetical protein H257_07798 [Aphanomyces astaci])

HSP 1 Score: 63.1586 bits (152), Expect = 1.744e-10
Identity = 32/67 (47.76%), Postives = 49/67 (73.13%), Query Frame = 0
Query:    1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYASLIEKAGGKLDK 67
            MS+A+ +PAQ +++  SL+ LLL D  V++SA+NL   + A+G TVA+Y P+LYA+ IE+ G K+ K
Sbjct:    1 MSIADFTPAQTQDLATSLAVLLLHDLQVEVSADNLTEALSAAGVTVASYLPSLYANAIER-GLKVSK 66          
BLAST of EWM21668.1 vs. NCBI_GenBank
Match: gi|403362817|gb|EJY81144.1| (60S acidic ribosomal protein p1, putative (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 62.7734 bits (151), Expect = 2.434e-10
Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 0
Query:    1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYASLIEKAGGKLDKFMGAPGAGGGGGGGAGAPAAAAAEGAAPEAKKEKKEEEEEADLGAGNMFGGD 119
            + +++LS  + +E+V + SALLL D G+++++E L  VIKASGN V AY+PA++A  ++  G  ++  +          GGA     AA   AAP  K E+K+ EE AD+  G +FG D
Sbjct:    4 VDVSQLSKQEHDELVCAYSALLLHDDGLEITSEKLAKVIKASGNEVEAYWPAMFAKALK--GQDIEDLLS--NLASAPVGGAAVAEVAATAVAAP--KVEEKKVEEAADVDMGGLFGDD 116          
BLAST of EWM21668.1 vs. NCBI_GenBank
Match: gi|673035778|ref|XP_008871850.1| (hypothetical protein H310_08026 [Aphanomyces invadans] >gi|574472289|gb|ETV99294.1| hypothetical protein H310_08026 [Aphanomyces invadans])

HSP 1 Score: 61.2326 bits (147), Expect = 1.039e-9
Identity = 31/67 (46.27%), Postives = 48/67 (71.64%), Query Frame = 0
Query:    1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYASLIEKAGGKLDK 67
            MS+A+ +PAQ +++  SL+ LLL D  V++SA+NL+  + A+G TV AY P LYA+ +E+ G K+ K
Sbjct:    1 MSIADFTPAQTQDLATSLAVLLLHDLEVEVSADNLNEALSAAGVTVPAYLPTLYANAVER-GLKVSK 66          
BLAST of EWM21668.1 vs. NCBI_GenBank
Match: gi|855305886|ref|XP_012895571.1| (uncharacterized protein [Blastocystis hominis] >gi|300121142|emb|CBK21523.2| unnamed protein product [Blastocystis hominis])

HSP 1 Score: 59.6918 bits (143), Expect = 4.137e-9
Identity = 26/49 (53.06%), Postives = 40/49 (81.63%), Query Frame = 0
Query:    6 LSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALY 54
            +S  +KEE+++SL+ALL  D+ V++S +NLDAVIKASGN +A Y+ A++
Sbjct:    1 MSTIEKEELIVSLAALLCADAKVEVSKDNLDAVIKASGNKIAPYWTAVF 49          
BLAST of EWM21668.1 vs. NCBI_GenBank
Match: gi|1032150039|gb|OAO13887.1| (60s acidic ribosomal protein [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 58.151 bits (139), Expect = 1.839e-8
Identity = 23/50 (46.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:    6 LSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYA 55
            ++PA+ +E+V SL+ L+L D+GV ++ EN+D ++KA+ NTV  Y+P L+A
Sbjct:    4 VAPAEHDEVVCSLACLILADAGVTVNTENIDKLLKATNNTVEPYWPMLFA 53          
The following BLAST results are available for this feature:
BLAST of EWM21668.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101933|gb|EWM21668.1|5.012e-75100.0060s acidic ribosomal protein [Nannochloropsis gadi... [more]
gi|298711916|emb|CBJ48603.1|9.773e-1453.97conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173932409|gb|OQR84398.1|1.202e-1350.68hypothetical protein ACHHYP_13424 [Achlya hypogyna... [more]
gi|813178546|ref|XP_012205742.1|9.164e-1353.62hypothetical protein SPRG_10789 [Saprolegnia paras... [more]
gi|678311361|emb|CDW88910.1|2.373e-1139.8460s acidic ribosomal protein p1 [Stylonychia lemna... [more]
gi|698797430|ref|XP_009831744.1|1.744e-1047.76hypothetical protein H257_07798 [Aphanomyces astac... [more]
gi|403362817|gb|EJY81144.1|2.434e-1038.6660S acidic ribosomal protein p1, putative (macronu... [more]
gi|673035778|ref|XP_008871850.1|1.039e-946.27hypothetical protein H310_08026 [Aphanomyces invad... [more]
gi|855305886|ref|XP_012895571.1|4.137e-953.06uncharacterized protein [Blastocystis hominis] >gi... [more]
gi|1032150039|gb|OAO13887.1|1.839e-846.0060s acidic ribosomal protein [Blastocystis sp. ATC... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9036rna9036Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications