EWM30665.1, cds9 (CDS) Nannochloropsis gaditana

Overview
NameEWM30665.1
Unique Namecds9
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:26469..26704 -
Alignment locationCM002455.1:24646..26338 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30665.1
ProductZn(2)-C6 fungal-type DNA-binding domain protein
Orig transcript idgnl|cribi|Naga_100091g7.5714.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:26469..26704 -
CM002455.1supercontigCM002455.1:24646..26338 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
[Close]
BLAST of EWM30665.1 vs. NCBI_GenBank
Match: gi|585113361|gb|EWM30665.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1336.24 bits (3457), Expect = 0.000e+0
Identity = 642/642 (100.00%), Postives = 642/642 (100.00%), Query Frame = 0 
Query:    1 MEVVNVNRNKEQAHKMAASHLDDRKIPRDDSPPQLMLLNPRSLMHQTEDNTITGNTKTRGTACMRCRKLKVHCTGSLPCLRCFHLSLVCRPQVPRPYKGNDSAEDCRCPSEKVKRARGSKHSSCTGVRKRGGDQRNKKDVEDALAIAMRAETDRTILLELIFDRMDPRPLAGIYLDSIMEVKTWDEKSKAALSTLRTSWFANLIRTWWLHSTVVGADTSWGMAREVALLLNFSPIDFEDTERLHLDYPLSVMRKQSEKFRDFVANGMLQIQQHPAFKALLAEVPPSTAIHLTCNTPNGLMLEVTNDAFDTYFRGADRMYNDIVLRKTMPCILYLGLVSPEDRREWTRFMIEAVSKGPLNANGEWRKTQIFKLVCTEGNIQLFLVKARFLPSVGTGSVAITLEPCPRSNHVTKIAGSTLKDGRKDEGKCLTTEIIRKSVSPSVHIMSEAAQIQEGVTGRSSESSSQDAQQKVSQSVRDDAFLLPGVATIPVGATPGMYERQADVEAVFGRKDSPSSAVVPSFGSGDDGAARWIQAVELTMSQAEKEQVGRKLLRAPFSDGLAPTDLAGGPSSSIGHSMDSCSSGTVSITSTLSTSTQCGQQYEALENANSGLVPECAADWDSEPPVFDATLLDVVFEDGAEGT 642
            MEVVNVNRNKEQAHKMAASHLDDRKIPRDDSPPQLMLLNPRSLMHQTEDNTITGNTKTRGTACMRCRKLKVHCTGSLPCLRCFHLSLVCRPQVPRPYKGNDSAEDCRCPSEKVKRARGSKHSSCTGVRKRGGDQRNKKDVEDALAIAMRAETDRTILLELIFDRMDPRPLAGIYLDSIMEVKTWDEKSKAALSTLRTSWFANLIRTWWLHSTVVGADTSWGMAREVALLLNFSPIDFEDTERLHLDYPLSVMRKQSEKFRDFVANGMLQIQQHPAFKALLAEVPPSTAIHLTCNTPNGLMLEVTNDAFDTYFRGADRMYNDIVLRKTMPCILYLGLVSPEDRREWTRFMIEAVSKGPLNANGEWRKTQIFKLVCTEGNIQLFLVKARFLPSVGTGSVAITLEPCPRSNHVTKIAGSTLKDGRKDEGKCLTTEIIRKSVSPSVHIMSEAAQIQEGVTGRSSESSSQDAQQKVSQSVRDDAFLLPGVATIPVGATPGMYERQADVEAVFGRKDSPSSAVVPSFGSGDDGAARWIQAVELTMSQAEKEQVGRKLLRAPFSDGLAPTDLAGGPSSSIGHSMDSCSSGTVSITSTLSTSTQCGQQYEALENANSGLVPECAADWDSEPPVFDATLLDVVFEDGAEGT
Sbjct:    1 MEVVNVNRNKEQAHKMAASHLDDRKIPRDDSPPQLMLLNPRSLMHQTEDNTITGNTKTRGTACMRCRKLKVHCTGSLPCLRCFHLSLVCRPQVPRPYKGNDSAEDCRCPSEKVKRARGSKHSSCTGVRKRGGDQRNKKDVEDALAIAMRAETDRTILLELIFDRMDPRPLAGIYLDSIMEVKTWDEKSKAALSTLRTSWFANLIRTWWLHSTVVGADTSWGMAREVALLLNFSPIDFEDTERLHLDYPLSVMRKQSEKFRDFVANGMLQIQQHPAFKALLAEVPPSTAIHLTCNTPNGLMLEVTNDAFDTYFRGADRMYNDIVLRKTMPCILYLGLVSPEDRREWTRFMIEAVSKGPLNANGEWRKTQIFKLVCTEGNIQLFLVKARFLPSVGTGSVAITLEPCPRSNHVTKIAGSTLKDGRKDEGKCLTTEIIRKSVSPSVHIMSEAAQIQEGVTGRSSESSSQDAQQKVSQSVRDDAFLLPGVATIPVGATPGMYERQADVEAVFGRKDSPSSAVVPSFGSGDDGAARWIQAVELTMSQAEKEQVGRKLLRAPFSDGLAPTDLAGGPSSSIGHSMDSCSSGTVSITSTLSTSTQCGQQYEALENANSGLVPECAADWDSEPPVFDATLLDVVFEDGAEGT 642
[Close]
BLAST of EWM30665.1 vs. NCBI_GenBank
Match: gi|585101548|gb|EWM21361.1| (hypothetical protein Naga_100666g2 [Nannochloropsis gaditana])

HSP 1 Score: 72.0182 bits (175), Expect = 1.433e-9
Identity = 58/214 (27.10%), Postives = 101/214 (47.20%), Query Frame = 0 
Query:  204 IRTWWLHSTVVGADTSWGMAREVALLLNFSPIDFEDTERLHLDYPLSVMRKQSEKFRDFVANGMLQIQQHPAFKALLAEVPPSTAIHLTCNTPNGLM-----LEVTNDAFDTYFRGADRMYNDIVLRKTMPCILYLG-LVSPEDRREWTRFMIEAVSKGPLNANGEWRKTQIFKLVCTEGNIQLFLVKARFLPSVGTGSVAITLEPCPRSNHVT 411
            +R W   S +VG D +WGMA +V   +  S +D ED   + L    S  + ++++    +   + +++  P +K L      +   H +  T  GL+     ++VTN AFD    GA R+ +   + +T  CIL L  LV+P+DR  +    I+A+       +  ++ T + K    +G+I+L +V  R +       V I  E  P+S  +T
Sbjct:   24 MRIWQHLSILVGGDVTWGMADKVGRSMGISAVDVEDNASVALGPTRSRRKGRAQEEVAILVRLVDEVRTMPDYKIL------ARTQHESVPTFLGLLAGERLVQVTNAAFDRMVEGAGRIMSSAFVHRTT-CILLLAQLVAPDDRSTFFEGFIQAL----FVPSRCFKSTFLLKWFQGDGDIRLCIVSFRPVKVGHLSGVQILFEAAPQSKRLT 226
The following BLAST results are available for this feature:
BLAST of EWM30665.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585113361|gb|EWM30665.1|0.000e+0100.00Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
gi|585101548|gb|EWM21361.1|1.433e-927.10hypothetical protein Naga_100666g2 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9rna9Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications