EWM21674.1, cds8999 (CDS) Nannochloropsis gaditana

Overview
NameEWM21674.1
Unique Namecds8999
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:153439..153541 -
Alignment locationKK037251.1:152704..153277 -
Alignment locationKK037251.1:152558..152655 -
Alignment locationKK037251.1:152322..152458 -
Alignment locationKK037251.1:152114..152275 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21674.1
ProductZinc finger FYVE-type protein
Orig transcript idgnl|cribi|Naga_100667g2.8080.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:153439..153541 -
KK037251.1supercontigKK037251.1:152704..153277 -
KK037251.1supercontigKK037251.1:152558..152655 -
KK037251.1supercontigKK037251.1:152322..152458 -
KK037251.1supercontigKK037251.1:152114..152275 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0046872metal ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR017455Znf_FYVE-rel
IPR013083Znf_RING/FYVE/PHD
IPR000306Znf_FYVE
Homology
BLAST of EWM21674.1 vs. NCBI_GenBank
Match: gi|585101944|gb|EWM21674.1| (Zinc finger FYVE-type protein [Nannochloropsis gaditana])

HSP 1 Score: 733.406 bits (1892), Expect = 0.000e+0
Identity = 357/357 (100.00%), Postives = 357/357 (100.00%), Query Frame = 0
Query:    1 MTRSRYHHGGCRQQQHPQGHPGALLLGAALVGTAVSRYIRPPRQELLIVQPQHGNPAPTYIQNAGATYMYIERPNQHLRQIENASHLVPHGPPDWRLAWHCDVCFVAFGLLTRRHHCRNCGRSLCSRHSEKRVPLPHWGYLNYVRVCDRCHGVVMACYRAGTPYSPSMLAMPAARDLTAANGSLGHGDRGFLQTSACSEVPRGDIFSHGTSVTAEAVAHGPPLARAGLGHALRAIPTAPSRNAFAGAVSRPAAGIGGPMRETVACTCVGERRCSDCRCLVFSLAAFSCIGIMLARHGSILYSQKRYSIFPARWPKRLSSLTCSMAIHMLSETNILQGGKSITTAWASHFLEKCISFF 357
            MTRSRYHHGGCRQQQHPQGHPGALLLGAALVGTAVSRYIRPPRQELLIVQPQHGNPAPTYIQNAGATYMYIERPNQHLRQIENASHLVPHGPPDWRLAWHCDVCFVAFGLLTRRHHCRNCGRSLCSRHSEKRVPLPHWGYLNYVRVCDRCHGVVMACYRAGTPYSPSMLAMPAARDLTAANGSLGHGDRGFLQTSACSEVPRGDIFSHGTSVTAEAVAHGPPLARAGLGHALRAIPTAPSRNAFAGAVSRPAAGIGGPMRETVACTCVGERRCSDCRCLVFSLAAFSCIGIMLARHGSILYSQKRYSIFPARWPKRLSSLTCSMAIHMLSETNILQGGKSITTAWASHFLEKCISFF
Sbjct:    1 MTRSRYHHGGCRQQQHPQGHPGALLLGAALVGTAVSRYIRPPRQELLIVQPQHGNPAPTYIQNAGATYMYIERPNQHLRQIENASHLVPHGPPDWRLAWHCDVCFVAFGLLTRRHHCRNCGRSLCSRHSEKRVPLPHWGYLNYVRVCDRCHGVVMACYRAGTPYSPSMLAMPAARDLTAANGSLGHGDRGFLQTSACSEVPRGDIFSHGTSVTAEAVAHGPPLARAGLGHALRAIPTAPSRNAFAGAVSRPAAGIGGPMRETVACTCVGERRCSDCRCLVFSLAAFSCIGIMLARHGSILYSQKRYSIFPARWPKRLSSLTCSMAIHMLSETNILQGGKSITTAWASHFLEKCISFF 357          
BLAST of EWM21674.1 vs. NCBI_GenBank
Match: gi|1026980278|ref|XP_016609092.1| (hypothetical protein SPPG_04145 [Spizellomyces punctatus DAOM BR117] >gi|907095388|gb|KND01053.1| hypothetical protein SPPG_04145 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 82.8037 bits (203), Expect = 1.331e-13
Identity = 42/120 (35.00%), Postives = 60/120 (50.00%), Query Frame = 0
Query:   61 IQNAGATYMYIERPNQHLRQIENASHLVPHGPPDWRLAWHCDVCFVAFGLLTRRHHCRNCGRSLCSRHSEKRVPLPHWGYLNYVRVCDRCHGVVMACYRAGTPYSPSMLAMPAARDLTAA 180
            ++  G T+  +ER       IE  +       P+W  +  C  C   F    R+HHCRNCG++ C + S K + LPH G +  VRVCD CH  + +    GTP+ P   ++P  RD  AA
Sbjct:  140 LKQDGVTFPPVERAESSAAMIETTTA------PEWTDSDVCMRCRTQFTTFNRKHHCRNCGQTFCGQCSAKTLALPHLGIVQEVRVCDTCHVKLTSKSPPGTPHQPRASSLPMPRDNDAA 253          
BLAST of EWM21674.1 vs. NCBI_GenBank
Match: gi|635363122|emb|CCI48299.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 80.1073 bits (196), Expect = 5.863e-13
Identity = 34/94 (36.17%), Postives = 57/94 (60.64%), Query Frame = 0
Query:   59 TYIQNAGATYMYIERPNQHLRQIENASHLVPHGPPDWRLAWHCDVCFVAFGLLTRRHHCRNCGRSLCSRHSEKRVPLPHWGYLNYVRVCDRCHG 152
            ++IQ+   +++  +  +Q   Q         + PP W+ +  C+VC  +F ++ RRHHCRNCG S+CS+HS  R+PLP +  +  +R+CD C+G
Sbjct:  315 SHIQSKIQSHLIEDDEDQDATQSIVQRRYNQNFPPRWKQSRRCNVCNYSFSIMRRRHHCRNCGHSVCSQHSNHRLPLPKFNLMQPLRLCDTCYG 408          
BLAST of EWM21674.1 vs. NCBI_GenBank
Match: gi|1139699231|gb|ONH66812.1| (Vacuolar protein sorting-associated protein 27 [Cyberlindnera fabianii])

HSP 1 Score: 79.7221 bits (195), Expect = 1.145e-12
Identity = 31/64 (48.44%), Postives = 38/64 (59.38%), Query Frame = 0
Query:   91 GPPDWRLAWHCDVCFVAFGLLTRRHHCRNCGRSLCSRHSEKRVPLPHWGYLNYVRVCDRCHGVV 154
             PP+W  +  C +C  AF +L R+HHCRNCG   C  HS K +PLP  G    VRVCD C+  V
Sbjct:  164 APPEWEDSDACMICSTAFSMLNRKHHCRNCGGVFCQAHSSKSIPLPELGITEPVRVCDTCYDEV 227          
BLAST of EWM21674.1 vs. NCBI_GenBank
Match: gi|663444121|emb|CDR38995.1| (CYFA0S02e10264g1_1 [Cyberlindnera fabianii])

HSP 1 Score: 79.7221 bits (195), Expect = 1.155e-12
Identity = 31/64 (48.44%), Postives = 38/64 (59.38%), Query Frame = 0
Query:   91 GPPDWRLAWHCDVCFVAFGLLTRRHHCRNCGRSLCSRHSEKRVPLPHWGYLNYVRVCDRCHGVV 154
             PP+W  +  C +C  AF +L R+HHCRNCG   C  HS K +PLP  G    VRVCD C+  V
Sbjct:  164 APPEWEDSDACMICSTAFSMLNRKHHCRNCGGVFCQAHSSKSIPLPELGITEPVRVCDTCYDEV 227          
BLAST of EWM21674.1 vs. NCBI_GenBank
Match: gi|954280782|gb|KRX72191.1| (Hepatocyte growth factor-regulated tyrosine kinase substrate, partial [Trichinella sp. T6])

HSP 1 Score: 79.7221 bits (195), Expect = 1.596e-12
Identity = 33/69 (47.83%), Postives = 42/69 (60.87%), Query Frame = 0
Query:   82 ENASHLVPHGPPDWRLAWHCDVCFVAFGLLTRRHHCRNCGRSLCSRHSEKRVPLPHWGYLNYVRVCDRC 150
            E+ +  +    PDW  A HC  C V F L+TR+HHCRNCG+  C + S K +PLPH G    VRVC+ C
Sbjct: 1663 ESDAMFMAESAPDWVDADHCFRCKVQFSLITRKHHCRNCGQIFCDKCSNKNIPLPHLGIERDVRVCEGC 1731          
BLAST of EWM21674.1 vs. NCBI_GenBank
Match: gi|954280781|gb|KRX72190.1| (Hepatocyte growth factor-regulated tyrosine kinase substrate, partial [Trichinella sp. T6])

HSP 1 Score: 79.7221 bits (195), Expect = 1.610e-12
Identity = 33/69 (47.83%), Postives = 42/69 (60.87%), Query Frame = 0
Query:   82 ENASHLVPHGPPDWRLAWHCDVCFVAFGLLTRRHHCRNCGRSLCSRHSEKRVPLPHWGYLNYVRVCDRC 150
            E+ +  +    PDW  A HC  C V F L+TR+HHCRNCG+  C + S K +PLPH G    VRVC+ C
Sbjct: 1663 ESDAMFMAESAPDWVDADHCFRCKVQFSLITRKHHCRNCGQIFCDKCSNKNIPLPHLGIERDVRVCEGC 1731          
BLAST of EWM21674.1 vs. NCBI_GenBank
Match: gi|954280779|gb|KRX72188.1| (Hepatocyte growth factor-regulated tyrosine kinase substrate, partial [Trichinella sp. T6])

HSP 1 Score: 79.7221 bits (195), Expect = 1.611e-12
Identity = 33/69 (47.83%), Postives = 42/69 (60.87%), Query Frame = 0
Query:   82 ENASHLVPHGPPDWRLAWHCDVCFVAFGLLTRRHHCRNCGRSLCSRHSEKRVPLPHWGYLNYVRVCDRC 150
            E+ +  +    PDW  A HC  C V F L+TR+HHCRNCG+  C + S K +PLPH G    VRVC+ C
Sbjct: 1663 ESDAMFMAESAPDWVDADHCFRCKVQFSLITRKHHCRNCGQIFCDKCSNKNIPLPHLGIERDVRVCEGC 1731          
BLAST of EWM21674.1 vs. NCBI_GenBank
Match: gi|954280778|gb|KRX72187.1| (Hepatocyte growth factor-regulated tyrosine kinase substrate, partial [Trichinella sp. T6])

HSP 1 Score: 79.7221 bits (195), Expect = 1.796e-12
Identity = 33/69 (47.83%), Postives = 42/69 (60.87%), Query Frame = 0
Query:   82 ENASHLVPHGPPDWRLAWHCDVCFVAFGLLTRRHHCRNCGRSLCSRHSEKRVPLPHWGYLNYVRVCDRC 150
            E+ +  +    PDW  A HC  C V F L+TR+HHCRNCG+  C + S K +PLPH G    VRVC+ C
Sbjct: 1653 ESDAMFMAESAPDWVDADHCFRCKVQFSLITRKHHCRNCGQIFCDKCSNKNIPLPHLGIERDVRVCEGC 1721          
BLAST of EWM21674.1 vs. NCBI_GenBank
Match: gi|954532842|gb|KRZ57318.1| (Hepatocyte growth factor-regulated tyrosine kinase substrate [Trichinella nativa])

HSP 1 Score: 79.7221 bits (195), Expect = 1.811e-12
Identity = 33/69 (47.83%), Postives = 42/69 (60.87%), Query Frame = 0
Query:   82 ENASHLVPHGPPDWRLAWHCDVCFVAFGLLTRRHHCRNCGRSLCSRHSEKRVPLPHWGYLNYVRVCDRC 150
            E+ +  +    PDW  A HC  C V F L+TR+HHCRNCG+  C + S K +PLPH G    VRVC+ C
Sbjct: 1485 ESDAMFMAESAPDWVDADHCFRCKVQFSLITRKHHCRNCGQIFCDKCSNKNIPLPHLGIERDVRVCEGC 1553          
The following BLAST results are available for this feature:
BLAST of EWM21674.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101944|gb|EWM21674.1|0.000e+0100.00Zinc finger FYVE-type protein [Nannochloropsis gad... [more]
gi|1026980278|ref|XP_016609092.1|1.331e-1335.00hypothetical protein SPPG_04145 [Spizellomyces pun... [more]
gi|635363122|emb|CCI48299.1|5.863e-1336.17unnamed protein product [Albugo candida][more]
gi|1139699231|gb|ONH66812.1|1.145e-1248.44Vacuolar protein sorting-associated protein 27 [Cy... [more]
gi|663444121|emb|CDR38995.1|1.155e-1248.44CYFA0S02e10264g1_1 [Cyberlindnera fabianii][more]
gi|954280782|gb|KRX72191.1|1.596e-1247.83Hepatocyte growth factor-regulated tyrosine kinase... [more]
gi|954280781|gb|KRX72190.1|1.610e-1247.83Hepatocyte growth factor-regulated tyrosine kinase... [more]
gi|954280779|gb|KRX72188.1|1.611e-1247.83Hepatocyte growth factor-regulated tyrosine kinase... [more]
gi|954280778|gb|KRX72187.1|1.796e-1247.83Hepatocyte growth factor-regulated tyrosine kinase... [more]
gi|954532842|gb|KRZ57318.1|1.811e-1247.83Hepatocyte growth factor-regulated tyrosine kinase... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9029rna9029Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications