EWM21680.1, cds8994 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21680.1 vs. NCBI_GenBank
Match: gi|585101954|gb|EWM21680.1| (myb transcription factor [Nannochloropsis gaditana]) HSP 1 Score: 783.482 bits (2022), Expect = 0.000e+0 Identity = 395/395 (100.00%), Postives = 395/395 (100.00%), Query Frame = 0
Query: 1 MVRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRRMSMGKSFSSRGHDEPYGGSRRGSKIESGNSLSMDGAGQSSDPPSLPPSFPPSLPPHPSTGISPPPMPPPPTSISATETLPLSPRTSIPPSLGPSDSAATLLPAHFLPHPLTTSEHTESRPSPVEATLTNSPSSSLLPVSQQAKECEGKGQGGVLGVEAGGRVEGGRQDGKEGGPDEAKILLSLSCGPSRGKEEGREEGREEGGVSDYGVGSPGGQRKRGRAGRGQSGERLVSSVMEEDTASSPVPSQGGGHSSNSSLGQESQGEGMEGGEKQEMMRTLAGSPEGAEAREEVLGV 395
MVRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRRMSMGKSFSSRGHDEPYGGSRRGSKIESGNSLSMDGAGQSSDPPSLPPSFPPSLPPHPSTGISPPPMPPPPTSISATETLPLSPRTSIPPSLGPSDSAATLLPAHFLPHPLTTSEHTESRPSPVEATLTNSPSSSLLPVSQQAKECEGKGQGGVLGVEAGGRVEGGRQDGKEGGPDEAKILLSLSCGPSRGKEEGREEGREEGGVSDYGVGSPGGQRKRGRAGRGQSGERLVSSVMEEDTASSPVPSQGGGHSSNSSLGQESQGEGMEGGEKQEMMRTLAGSPEGAEAREEVLGV
Sbjct: 1 MVRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRRMSMGKSFSSRGHDEPYGGSRRGSKIESGNSLSMDGAGQSSDPPSLPPSFPPSLPPHPSTGISPPPMPPPPTSISATETLPLSPRTSIPPSLGPSDSAATLLPAHFLPHPLTTSEHTESRPSPVEATLTNSPSSSLLPVSQQAKECEGKGQGGVLGVEAGGRVEGGRQDGKEGGPDEAKILLSLSCGPSRGKEEGREEGREEGGVSDYGVGSPGGQRKRGRAGRGQSGERLVSSVMEEDTASSPVPSQGGGHSSNSSLGQESQGEGMEGGEKQEMMRTLAGSPEGAEAREEVLGV 395
BLAST of EWM21680.1 vs. NCBI_GenBank
Match: gi|635366928|emb|CCI44816.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 153.295 bits (386), Expect = 3.630e-40 Identity = 74/154 (48.05%), Postives = 101/154 (65.58%), Query Frame = 0
Query: 2 VRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRRMSMGKSFSSRGHDEPYGGSRRGSKIESGN------SLSMDGAGQSSDPPSLPPS 149
V KW+ EED M++LV+ GT+ W IG +L GR+GKQCRERWHNQLDP+I+K+ W+ EEE +L++ H +YGN+WAEIA+ LPGRTDNAIKNHWN+++RR + +S S + SK+E N +L++ Q P PS
Sbjct: 30 VSKWTDEEDNMMIKLVERYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPSIRKDPWTDEEERILKEAHEKYGNKWAEIAKKLPGRTDNAIKNHWNSSKRR--LKRSRMSISESQTIAVDTMDSKVEIENLKASPKNLALTAVSQELSPGPCKPS 181
BLAST of EWM21680.1 vs. NCBI_GenBank
Match: gi|299115109|emb|CBN75476.1| (putative c-myb-like transcription factor [Ectocarpus siliculosus]) HSP 1 Score: 160.614 bits (405), Expect = 5.143e-40 Identity = 71/107 (66.36%), Postives = 85/107 (79.44%), Query Frame = 0
Query: 1 MVRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGG----RSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRRMS 103
VRKWS +EDAEMV+LV ELG KQWG IG +L R+GKQCRERWHNQLDP IKK+ W+ EE L + H+ +GN+WAEIA+ LPGRTDNAIKNHWN+A+RR+S
Sbjct: 22 CVRKWSKQEDAEMVKLVLELGVKQWGLIGSRLSSLGEDRTGKQCRERWHNQLDPAIKKDPWTKAEEDTLMRAHSIHGNKWAEIAKILPGRTDNAIKNHWNSAKRRLS 128
BLAST of EWM21680.1 vs. NCBI_GenBank
Match: gi|301123585|ref|XP_002909519.1| (myb-like DNA-binding protein, putative [Phytophthora infestans T30-4] >gi|262100281|gb|EEY58333.1| myb-like DNA-binding protein, putative [Phytophthora infestans T30-4]) HSP 1 Score: 152.525 bits (384), Expect = 1.756e-39 Identity = 63/104 (60.58%), Postives = 85/104 (81.73%), Query Frame = 0
Query: 2 VRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRRMSMG 105
V KW+ +ED M++LV++ GT+ W IG +L GR+GKQCRERWHNQLDP I+KE W+ EEE +L++ H ++GN+WAEIA+ LPGRTDNAIKNHWN+++RR+ G
Sbjct: 32 VCKWTEKEDLLMLKLVQKYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPAIRKEPWTPEEERILKELHDKFGNKWAEIAKMLPGRTDNAIKNHWNSSKRRLKRG 135
BLAST of EWM21680.1 vs. NCBI_GenBank
Match: gi|585102503|gb|EWM22086.1| (hypothetical protein Naga_100039g34 [Nannochloropsis gaditana]) HSP 1 Score: 160.229 bits (404), Expect = 2.160e-39 Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = 0
Query: 2 VRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRRMS 103
VRKW +ED + LV+E GTK WG I + GR+GKQCRERWHNQLDP+IKK+AW+ +EE +L + HA++GNRWAEIA+ LPGRTDNAIKN WN+A+RR+S
Sbjct: 166 VRKWRPQEDELLTALVREYGTKHWGIICTKFEGRTGKQCRERWHNQLDPHIKKDAWTKDEEDLLLKAHAQFGNRWAEIAKVLPGRTDNAIKNRWNSAKRRLS 267
BLAST of EWM21680.1 vs. NCBI_GenBank
Match: gi|831789186|ref|XP_012758979.1| (hypothetical protein SAMD00019534_000920 [Acytostelium subglobosum LB1] >gi|735859611|dbj|GAM16917.1| hypothetical protein SAMD00019534_000920 [Acytostelium subglobosum LB1]) HSP 1 Score: 158.688 bits (400), Expect = 2.492e-39 Identity = 69/114 (60.53%), Postives = 87/114 (76.32%), Query Frame = 0
Query: 5 WSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARR--RMSMGKSFSSRGHDEP 116
W+ EED ++ LVK G K+W +I + L GR GKQCRERWHN LDPNIK+EAWS EE+ ++ +KHA YGN+WAEI++FLPGRTDNAIKNHWN++ R R +M S S+GH P
Sbjct: 99 WTTEEDQKVRELVKIYGPKKWSEISLHLKGRMGKQCRERWHNHLDPNIKREAWSEEEDRIILEKHAVYGNKWAEISKFLPGRTDNAIKNHWNSSMRKARTNMMMSNGSKGHSVP 212
BLAST of EWM21680.1 vs. NCBI_GenBank
Match: gi|698777020|ref|XP_009821554.1| (hypothetical protein H257_00523 [Aphanomyces astaci] >gi|574123679|gb|ETV89154.1| hypothetical protein H257_00523 [Aphanomyces astaci]) HSP 1 Score: 150.599 bits (379), Expect = 3.259e-39 Identity = 62/100 (62.00%), Postives = 82/100 (82.00%), Query Frame = 0
Query: 2 VRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRR 101
+ KW+ EEDA M+ LV+ GT++W IG L GR+GKQCRERWHNQLDP+I+K+ W+++EE +L+ H +YGN+WAEIA+ LPGRTDNAIKNHWN+ +RR
Sbjct: 21 ISKWTPEEDALMMELVQTHGTRRWSVIGSLLSGRNGKQCRERWHNQLDPSIRKDPWTSDEETLLKVAHHKYGNKWAEIAKLLPGRTDNAIKNHWNSYKRR 120
BLAST of EWM21680.1 vs. NCBI_GenBank
Match: gi|673017204|ref|XP_008862563.1| (hypothetical protein H310_01276 [Aphanomyces invadans] >gi|574481766|gb|ETW08758.1| hypothetical protein H310_01276 [Aphanomyces invadans]) HSP 1 Score: 149.828 bits (377), Expect = 4.733e-39 Identity = 96/245 (39.18%), Postives = 133/245 (54.29%), Query Frame = 0
Query: 2 VRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRRMSMGKSFSSRGHDEPYGGSRRGSKIESGNSLSMDGAGQSSDPPSLPPSF--PPSLPPHPSTGISPPPMPPPPTSISATETLPLSPRTSIPPSLGPSDS--AATLLPAHFLPHPLTTSEHTESRPSPVEATLTNSPSSSLLPVSQQ 242
+ KW+ EED+ M+ LV+ GT++W IG L GR+GKQCRERWHNQLDP+I+K+ W+ +EE +L+ H +YGN+WAEIA+ LPGRTDNAIKNHWN+ +R RGH ++ +SM PS P S P S+ H T ++ M + LP+ S+ + A T LP HF HP+ +H+ PV +T+T S +SL P+ QQ
Sbjct: 21 ISKWTPEEDSLMMELVQTHGTRRWSVIGSLLPGRNGKQCRERWHNQLDPSIRKDPWTTDEETLLKVAHHKYGNKWAEIAKLLPGRTDNAIKNHWNSYKR----------RGH----------RAMQHKAKMSM---------PSQPHSHMEPASIFEHSPTNLNRISM----LHDHIKQQLPMQEHFSLLHATVTKQQHLAHTTLPHHF-HHPMM--QHS-LHSMPVSSTMT-SNGTSLFPLHQQ 227
BLAST of EWM21680.1 vs. NCBI_GenBank
Match: gi|695370081|ref|XP_009514218.1| (hypothetical protein PHYSODRAFT_343494 [Phytophthora sojae] >gi|348687129|gb|EGZ26943.1| hypothetical protein PHYSODRAFT_343494 [Phytophthora sojae]) HSP 1 Score: 153.295 bits (386), Expect = 7.486e-39 Identity = 64/104 (61.54%), Postives = 85/104 (81.73%), Query Frame = 0
Query: 2 VRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRRMSMG 105
V KW+ +ED M++LV++ GT+ W IG +L GR+GKQCRERWHNQLDP I+KE WS EEE +L++ H ++GN+WAEIA+ LPGRTDNAIKNHWN+++RR+ G
Sbjct: 30 VCKWTEKEDLLMLKLVQKYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPAIRKEPWSPEEERILRELHDKFGNKWAEIAKMLPGRTDNAIKNHWNSSKRRLKRG 133
BLAST of EWM21680.1 vs. NCBI_GenBank
Match: gi|570990459|gb|ETP48411.1| (hypothetical protein F442_05841 [Phytophthora parasitica P10297]) HSP 1 Score: 150.599 bits (379), Expect = 8.221e-39 Identity = 62/104 (59.62%), Postives = 85/104 (81.73%), Query Frame = 0
Query: 2 VRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRRMSMG 105
V KW+ +ED M++LV++ GT+ W IG +L GR+GKQCRERWHNQLDP I+KE W+ +EE +L++ H ++GN+WAEIA+ LPGRTDNAIKNHWN+++RR+ G
Sbjct: 29 VCKWTEKEDLMMLKLVQKYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPAIRKEPWTPDEERILKELHDKFGNKWAEIAKMLPGRTDNAIKNHWNSSKRRLKRG 132 The following BLAST results are available for this feature:
BLAST of EWM21680.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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