EWM21680.1, cds8994 (CDS) Nannochloropsis gaditana

Overview
NameEWM21680.1
Unique Namecds8994
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:140617..140892 -
Alignment locationKK037251.1:140319..140387 -
Alignment locationKK037251.1:139229..140071 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21680.1
Productmyb transcription factor
Orig transcript idgnl|cribi|Naga_100412g2.3340.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:140617..140892 -
KK037251.1supercontigKK037251.1:140319..140387 -
KK037251.1supercontigKK037251.1:139229..140071 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR009057Homeodomain-like
IPR001005SANT/Myb
Homology
BLAST of EWM21680.1 vs. NCBI_GenBank
Match: gi|585101954|gb|EWM21680.1| (myb transcription factor [Nannochloropsis gaditana])

HSP 1 Score: 783.482 bits (2022), Expect = 0.000e+0
Identity = 395/395 (100.00%), Postives = 395/395 (100.00%), Query Frame = 0
Query:    1 MVRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRRMSMGKSFSSRGHDEPYGGSRRGSKIESGNSLSMDGAGQSSDPPSLPPSFPPSLPPHPSTGISPPPMPPPPTSISATETLPLSPRTSIPPSLGPSDSAATLLPAHFLPHPLTTSEHTESRPSPVEATLTNSPSSSLLPVSQQAKECEGKGQGGVLGVEAGGRVEGGRQDGKEGGPDEAKILLSLSCGPSRGKEEGREEGREEGGVSDYGVGSPGGQRKRGRAGRGQSGERLVSSVMEEDTASSPVPSQGGGHSSNSSLGQESQGEGMEGGEKQEMMRTLAGSPEGAEAREEVLGV 395
            MVRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRRMSMGKSFSSRGHDEPYGGSRRGSKIESGNSLSMDGAGQSSDPPSLPPSFPPSLPPHPSTGISPPPMPPPPTSISATETLPLSPRTSIPPSLGPSDSAATLLPAHFLPHPLTTSEHTESRPSPVEATLTNSPSSSLLPVSQQAKECEGKGQGGVLGVEAGGRVEGGRQDGKEGGPDEAKILLSLSCGPSRGKEEGREEGREEGGVSDYGVGSPGGQRKRGRAGRGQSGERLVSSVMEEDTASSPVPSQGGGHSSNSSLGQESQGEGMEGGEKQEMMRTLAGSPEGAEAREEVLGV
Sbjct:    1 MVRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRRMSMGKSFSSRGHDEPYGGSRRGSKIESGNSLSMDGAGQSSDPPSLPPSFPPSLPPHPSTGISPPPMPPPPTSISATETLPLSPRTSIPPSLGPSDSAATLLPAHFLPHPLTTSEHTESRPSPVEATLTNSPSSSLLPVSQQAKECEGKGQGGVLGVEAGGRVEGGRQDGKEGGPDEAKILLSLSCGPSRGKEEGREEGREEGGVSDYGVGSPGGQRKRGRAGRGQSGERLVSSVMEEDTASSPVPSQGGGHSSNSSLGQESQGEGMEGGEKQEMMRTLAGSPEGAEAREEVLGV 395          
BLAST of EWM21680.1 vs. NCBI_GenBank
Match: gi|635366928|emb|CCI44816.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 153.295 bits (386), Expect = 3.630e-40
Identity = 74/154 (48.05%), Postives = 101/154 (65.58%), Query Frame = 0
Query:    2 VRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRRMSMGKSFSSRGHDEPYGGSRRGSKIESGN------SLSMDGAGQSSDPPSLPPS 149
            V KW+ EED  M++LV+  GT+ W  IG +L GR+GKQCRERWHNQLDP+I+K+ W+ EEE +L++ H +YGN+WAEIA+ LPGRTDNAIKNHWN+++RR  + +S  S    +        SK+E  N      +L++    Q   P    PS
Sbjct:   30 VSKWTDEEDNMMIKLVERYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPSIRKDPWTDEEERILKEAHEKYGNKWAEIAKKLPGRTDNAIKNHWNSSKRR--LKRSRMSISESQTIAVDTMDSKVEIENLKASPKNLALTAVSQELSPGPCKPS 181          
BLAST of EWM21680.1 vs. NCBI_GenBank
Match: gi|299115109|emb|CBN75476.1| (putative c-myb-like transcription factor [Ectocarpus siliculosus])

HSP 1 Score: 160.614 bits (405), Expect = 5.143e-40
Identity = 71/107 (66.36%), Postives = 85/107 (79.44%), Query Frame = 0
Query:    1 MVRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGG----RSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRRMS 103
             VRKWS +EDAEMV+LV ELG KQWG IG +L      R+GKQCRERWHNQLDP IKK+ W+  EE  L + H+ +GN+WAEIA+ LPGRTDNAIKNHWN+A+RR+S
Sbjct:   22 CVRKWSKQEDAEMVKLVLELGVKQWGLIGSRLSSLGEDRTGKQCRERWHNQLDPAIKKDPWTKAEEDTLMRAHSIHGNKWAEIAKILPGRTDNAIKNHWNSAKRRLS 128          
BLAST of EWM21680.1 vs. NCBI_GenBank
Match: gi|301123585|ref|XP_002909519.1| (myb-like DNA-binding protein, putative [Phytophthora infestans T30-4] >gi|262100281|gb|EEY58333.1| myb-like DNA-binding protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 152.525 bits (384), Expect = 1.756e-39
Identity = 63/104 (60.58%), Postives = 85/104 (81.73%), Query Frame = 0
Query:    2 VRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRRMSMG 105
            V KW+ +ED  M++LV++ GT+ W  IG +L GR+GKQCRERWHNQLDP I+KE W+ EEE +L++ H ++GN+WAEIA+ LPGRTDNAIKNHWN+++RR+  G
Sbjct:   32 VCKWTEKEDLLMLKLVQKYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPAIRKEPWTPEEERILKELHDKFGNKWAEIAKMLPGRTDNAIKNHWNSSKRRLKRG 135          
BLAST of EWM21680.1 vs. NCBI_GenBank
Match: gi|585102503|gb|EWM22086.1| (hypothetical protein Naga_100039g34 [Nannochloropsis gaditana])

HSP 1 Score: 160.229 bits (404), Expect = 2.160e-39
Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = 0
Query:    2 VRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRRMS 103
            VRKW  +ED  +  LV+E GTK WG I  +  GR+GKQCRERWHNQLDP+IKK+AW+ +EE +L + HA++GNRWAEIA+ LPGRTDNAIKN WN+A+RR+S
Sbjct:  166 VRKWRPQEDELLTALVREYGTKHWGIICTKFEGRTGKQCRERWHNQLDPHIKKDAWTKDEEDLLLKAHAQFGNRWAEIAKVLPGRTDNAIKNRWNSAKRRLS 267          
BLAST of EWM21680.1 vs. NCBI_GenBank
Match: gi|831789186|ref|XP_012758979.1| (hypothetical protein SAMD00019534_000920 [Acytostelium subglobosum LB1] >gi|735859611|dbj|GAM16917.1| hypothetical protein SAMD00019534_000920 [Acytostelium subglobosum LB1])

HSP 1 Score: 158.688 bits (400), Expect = 2.492e-39
Identity = 69/114 (60.53%), Postives = 87/114 (76.32%), Query Frame = 0
Query:    5 WSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARR--RMSMGKSFSSRGHDEP 116
            W+ EED ++  LVK  G K+W +I + L GR GKQCRERWHN LDPNIK+EAWS EE+ ++ +KHA YGN+WAEI++FLPGRTDNAIKNHWN++ R  R +M  S  S+GH  P
Sbjct:   99 WTTEEDQKVRELVKIYGPKKWSEISLHLKGRMGKQCRERWHNHLDPNIKREAWSEEEDRIILEKHAVYGNKWAEISKFLPGRTDNAIKNHWNSSMRKARTNMMMSNGSKGHSVP 212          
BLAST of EWM21680.1 vs. NCBI_GenBank
Match: gi|698777020|ref|XP_009821554.1| (hypothetical protein H257_00523 [Aphanomyces astaci] >gi|574123679|gb|ETV89154.1| hypothetical protein H257_00523 [Aphanomyces astaci])

HSP 1 Score: 150.599 bits (379), Expect = 3.259e-39
Identity = 62/100 (62.00%), Postives = 82/100 (82.00%), Query Frame = 0
Query:    2 VRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRR 101
            + KW+ EEDA M+ LV+  GT++W  IG  L GR+GKQCRERWHNQLDP+I+K+ W+++EE +L+  H +YGN+WAEIA+ LPGRTDNAIKNHWN+ +RR
Sbjct:   21 ISKWTPEEDALMMELVQTHGTRRWSVIGSLLSGRNGKQCRERWHNQLDPSIRKDPWTSDEETLLKVAHHKYGNKWAEIAKLLPGRTDNAIKNHWNSYKRR 120          
BLAST of EWM21680.1 vs. NCBI_GenBank
Match: gi|673017204|ref|XP_008862563.1| (hypothetical protein H310_01276 [Aphanomyces invadans] >gi|574481766|gb|ETW08758.1| hypothetical protein H310_01276 [Aphanomyces invadans])

HSP 1 Score: 149.828 bits (377), Expect = 4.733e-39
Identity = 96/245 (39.18%), Postives = 133/245 (54.29%), Query Frame = 0
Query:    2 VRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRRMSMGKSFSSRGHDEPYGGSRRGSKIESGNSLSMDGAGQSSDPPSLPPSF--PPSLPPHPSTGISPPPMPPPPTSISATETLPLSPRTSIPPSLGPSDS--AATLLPAHFLPHPLTTSEHTESRPSPVEATLTNSPSSSLLPVSQQ 242
            + KW+ EED+ M+ LV+  GT++W  IG  L GR+GKQCRERWHNQLDP+I+K+ W+ +EE +L+  H +YGN+WAEIA+ LPGRTDNAIKNHWN+ +R          RGH            ++    +SM         PS P S   P S+  H  T ++   M          + LP+    S+  +        A T LP HF  HP+   +H+     PV +T+T S  +SL P+ QQ
Sbjct:   21 ISKWTPEEDSLMMELVQTHGTRRWSVIGSLLPGRNGKQCRERWHNQLDPSIRKDPWTTDEETLLKVAHHKYGNKWAEIAKLLPGRTDNAIKNHWNSYKR----------RGH----------RAMQHKAKMSM---------PSQPHSHMEPASIFEHSPTNLNRISM----LHDHIKQQLPMQEHFSLLHATVTKQQHLAHTTLPHHF-HHPMM--QHS-LHSMPVSSTMT-SNGTSLFPLHQQ 227          
BLAST of EWM21680.1 vs. NCBI_GenBank
Match: gi|695370081|ref|XP_009514218.1| (hypothetical protein PHYSODRAFT_343494 [Phytophthora sojae] >gi|348687129|gb|EGZ26943.1| hypothetical protein PHYSODRAFT_343494 [Phytophthora sojae])

HSP 1 Score: 153.295 bits (386), Expect = 7.486e-39
Identity = 64/104 (61.54%), Postives = 85/104 (81.73%), Query Frame = 0
Query:    2 VRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRRMSMG 105
            V KW+ +ED  M++LV++ GT+ W  IG +L GR+GKQCRERWHNQLDP I+KE WS EEE +L++ H ++GN+WAEIA+ LPGRTDNAIKNHWN+++RR+  G
Sbjct:   30 VCKWTEKEDLLMLKLVQKYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPAIRKEPWSPEEERILRELHDKFGNKWAEIAKMLPGRTDNAIKNHWNSSKRRLKRG 133          
BLAST of EWM21680.1 vs. NCBI_GenBank
Match: gi|570990459|gb|ETP48411.1| (hypothetical protein F442_05841 [Phytophthora parasitica P10297])

HSP 1 Score: 150.599 bits (379), Expect = 8.221e-39
Identity = 62/104 (59.62%), Postives = 85/104 (81.73%), Query Frame = 0
Query:    2 VRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRRMSMG 105
            V KW+ +ED  M++LV++ GT+ W  IG +L GR+GKQCRERWHNQLDP I+KE W+ +EE +L++ H ++GN+WAEIA+ LPGRTDNAIKNHWN+++RR+  G
Sbjct:   29 VCKWTEKEDLMMLKLVQKYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPAIRKEPWTPDEERILKELHDKFGNKWAEIAKMLPGRTDNAIKNHWNSSKRRLKRG 132          
The following BLAST results are available for this feature:
BLAST of EWM21680.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101954|gb|EWM21680.1|0.000e+0100.00myb transcription factor [Nannochloropsis gaditana... [more]
gi|635366928|emb|CCI44816.1|3.630e-4048.05unnamed protein product [Albugo candida][more]
gi|299115109|emb|CBN75476.1|5.143e-4066.36putative c-myb-like transcription factor [Ectocarp... [more]
gi|301123585|ref|XP_002909519.1|1.756e-3960.58myb-like DNA-binding protein, putative [Phytophtho... [more]
gi|585102503|gb|EWM22086.1|2.160e-3964.71hypothetical protein Naga_100039g34 [Nannochlorops... [more]
gi|831789186|ref|XP_012758979.1|2.492e-3960.53hypothetical protein SAMD00019534_000920 [Acytoste... [more]
gi|698777020|ref|XP_009821554.1|3.259e-3962.00hypothetical protein H257_00523 [Aphanomyces astac... [more]
gi|673017204|ref|XP_008862563.1|4.733e-3939.18hypothetical protein H310_01276 [Aphanomyces invad... [more]
gi|695370081|ref|XP_009514218.1|7.486e-3961.54hypothetical protein PHYSODRAFT_343494 [Phytophtho... [more]
gi|570990459|gb|ETP48411.1|8.221e-3959.62hypothetical protein F442_05841 [Phytophthora para... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9024rna9024Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications