EWM21678.1, cds8993 (CDS) Nannochloropsis gaditana

Overview
NameEWM21678.1
Unique Namecds8993
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:134650..135678 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21678.1
ProductMajor facilitator superfamily domain protein
Orig transcript idgnl|cribi|Naga_100412g1.3338.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:134650..135678 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0055085transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
IPR011701MFS
Homology
BLAST of EWM21678.1 vs. NCBI_GenBank
Match: gi|585101952|gb|EWM21678.1| (Major facilitator superfamily domain protein [Nannochloropsis gaditana])

HSP 1 Score: 677.937 bits (1748), Expect = 0.000e+0
Identity = 342/342 (100.00%), Postives = 342/342 (100.00%), Query Frame = 0
Query:    1 MALFKADISEDQLISHRKHPPQLPPTPATTSVLQASPKPPFHSFWALRAFLCCSITWSAVMTGCLGPFFPLYMKENFQATTTLVGFIFSVTSLVQFLTCPLVAHISHRITRLGSLRLAILILIGGGFIFGLSHHAAGFLAGRLLQGMGNGVLEVAGLSLLMRHSPDIRRDIGLLEGSSALGFLFGPLLGGLIFHWWGIRTLFLLLTAPFLLFLSLLLLCPHWIVPRTSSFRIPPPSSTHASPAYPTGAGCREDEASDLPPPRLTPASFLPGMPDDQGGARAYLHALFQALGQNFLLPVYIVTVLLVSGALGFFDTALAEHLGGCEGKEGGREGGRECSRVLG 342
            MALFKADISEDQLISHRKHPPQLPPTPATTSVLQASPKPPFHSFWALRAFLCCSITWSAVMTGCLGPFFPLYMKENFQATTTLVGFIFSVTSLVQFLTCPLVAHISHRITRLGSLRLAILILIGGGFIFGLSHHAAGFLAGRLLQGMGNGVLEVAGLSLLMRHSPDIRRDIGLLEGSSALGFLFGPLLGGLIFHWWGIRTLFLLLTAPFLLFLSLLLLCPHWIVPRTSSFRIPPPSSTHASPAYPTGAGCREDEASDLPPPRLTPASFLPGMPDDQGGARAYLHALFQALGQNFLLPVYIVTVLLVSGALGFFDTALAEHLGGCEGKEGGREGGRECSRVLG
Sbjct:    1 MALFKADISEDQLISHRKHPPQLPPTPATTSVLQASPKPPFHSFWALRAFLCCSITWSAVMTGCLGPFFPLYMKENFQATTTLVGFIFSVTSLVQFLTCPLVAHISHRITRLGSLRLAILILIGGGFIFGLSHHAAGFLAGRLLQGMGNGVLEVAGLSLLMRHSPDIRRDIGLLEGSSALGFLFGPLLGGLIFHWWGIRTLFLLLTAPFLLFLSLLLLCPHWIVPRTSSFRIPPPSSTHASPAYPTGAGCREDEASDLPPPRLTPASFLPGMPDDQGGARAYLHALFQALGQNFLLPVYIVTVLLVSGALGFFDTALAEHLGGCEGKEGGREGGRECSRVLG 342          
BLAST of EWM21678.1 vs. NCBI_GenBank
Match: gi|585099635|gb|EWM20208.1| (major facilitator superfamily mfs_1 [Nannochloropsis gaditana])

HSP 1 Score: 177.178 bits (448), Expect = 8.197e-50
Identity = 94/179 (52.51%), Postives = 127/179 (70.95%), Query Frame = 0
Query:   47 LRAFLCCSITWSAVMTGCLGPFFPLYMKENFQATTTLVGFIFSVTSLVQFLTCPLVAHISHRITRLGSLRLAILILIGGGFIFGLSHHAAGFLAGRLLQGMGNGVLEVAGLSLLMRHSPDIRRDIGLLEGSSALGFLFGPLLGGLIFHWWGIRTLFLLLTAPFLLFLSLLLLCPHWIVP 225
            LR F+   I WS+ +  CLGP+FPLY+K  F A++TL+G IFS+TS+VQFLTCPLV  +S   +RL +L + +++L  G  +FG+     GF+ GRLLQG+GNG LEV+GLSLLMR S D+RRDIGLLEG+S +G L GPL+GG +    G R LF ++TAP L  + LL + P  ++P
Sbjct:   97 LRFFITFGIAWSSTIISCLGPYFPLYVKRKFGASSTLLGLIFSITSIVQFLTCPLVGPLSRAFSRLVTLIIGLVVLAAGALLFGMLDSIPGFIIGRLLQGIGNGFLEVSGLSLLMRFSTDLRRDIGLLEGASGVGSLLGPLIGGFLSARLGFRALFGMMTAPLLALILLLWVRPGAVLP 275          
BLAST of EWM21678.1 vs. NCBI_GenBank
Match: gi|553177040|ref|XP_005852431.1| (major facilitator superfamily mfs 1, partial [Nannochloropsis gaditana CCMP526] >gi|422296102|gb|EKU23401.1| major facilitator superfamily mfs 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 179.874 bits (455), Expect = 3.939e-49
Identity = 94/179 (52.51%), Postives = 127/179 (70.95%), Query Frame = 0
Query:   47 LRAFLCCSITWSAVMTGCLGPFFPLYMKENFQATTTLVGFIFSVTSLVQFLTCPLVAHISHRITRLGSLRLAILILIGGGFIFGLSHHAAGFLAGRLLQGMGNGVLEVAGLSLLMRHSPDIRRDIGLLEGSSALGFLFGPLLGGLIFHWWGIRTLFLLLTAPFLLFLSLLLLCPHWIVP 225
            LR F+   I WS+ +  CLGP+FPLY+K  F A++TL+G IFS+TS+VQFLTCPLV  +S   +RL +L + +++L  G  +FG+     GF+ GRLLQG+GNG LEV+GLSLLMR S D+RRDIGLLEG+S +G L GPL+GG +    G R LF ++TAP L  + LL + P  ++P
Sbjct:   97 LRFFITFGIAWSSTIISCLGPYFPLYVKRKFGASSTLLGLIFSITSIVQFLTCPLVGPLSRAFSRLVTLMIGLVVLAAGALLFGMLDSIPGFIIGRLLQGIGNGFLEVSGLSLLMRFSTDLRRDIGLLEGASGVGSLLGPLIGGFLSARLGFRALFGMMTAPLLALILLLWVRPGAVLP 275          
BLAST of EWM21678.1 vs. NCBI_GenBank
Match: gi|553183476|ref|XP_005853905.1| (permease (major facilitator superfamily) [Nannochloropsis gaditana CCMP526] >gi|422295160|gb|EKU22459.1| permease (major facilitator superfamily) [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 102.449 bits (254), Expect = 2.185e-20
Identity = 87/276 (31.52%), Postives = 136/276 (49.28%), Query Frame = 0
Query:   60 VMTGCLGPFFPLYMKENFQATTTLVGFIFSVTSLVQFLTCPLVAHISHRITRLGSLRLAILILIGGGFI-FGLSHHAAGFLAGRLLQGMGNGVLEVAGLSLLMRHSPDIRRDIGLLEGSSALGFLFGPLLGGLIFHWWGIRTLFLLLTAPFLLFLSLLLLCPHWIVPRTSSF-RIPPPSSTHASPAYPTGAGCREDEASDLPPPRLTPASFLPGMPDDQG------GARAYLHALFQALGQNFL----LPVYIV--TVLLVSGALGFFDTALAEHL 321
            +++  + PFFP + K    A +T+VG IFS+  L  FLT  ++   S R  R   +  + LIL+GGG + FG  +     +  R++QG+G G + VAG++LL++ S +I RD+GL + +  LG++ GP LG +++ + G R L L+L A   + ++ L L P ++ P   S   +   +ST  SPA        E       PP     S    +P   G       A A LH       Q+F     LP+ +V  T +    +LG FD  +  HL
Sbjct:  100 ILSAAMVPFFPDHAKRYLNADSTIVGVIFSLYPLSLFLTSLVIGMASARFGR-AFVYTSGLILLGGGTVGFGFCNDLTSIMIMRVVQGIGGGCINVAGMALLLQVSINIERDVGLDQAAIGLGYILGPPLGAILYAYMGFRDLNLVLGA---IPIAQLFLFP-FVAPSIPSLTSVGDTASTGTSPAKDDAPQSLEPAKGRTKPPSDDSLSLRTPIPTSLGVPSLLLEAPASLHP-----AQSFFALTSLPILVVATTSVFAFTSLGLFDPLVLPHL 365          
BLAST of EWM21678.1 vs. NCBI_GenBank
Match: gi|551678537|ref|XP_005842021.1| (hypothetical protein GUITHDRAFT_99681 [Guillardia theta CCMP2712] >gi|428186190|gb|EKX55041.1| hypothetical protein GUITHDRAFT_99681 [Guillardia theta CCMP2712])

HSP 1 Score: 88.9669 bits (219), Expect = 7.216e-16
Identity = 79/288 (27.43%), Postives = 124/288 (43.06%), Query Frame = 0
Query:   56 TWSAVMT-GCLGPFFPLYMKENFQATTTLVGFIFSVTSLVQFLTCPLVAHISHRITRLGSLRLAILILIGGGFIFGLSHHAAGFLAGRLLQGMGNGVLEVAGLSLLMRHSPDIRRDIGLLEGSSALGFLFGPLLGGLIFHWWGIRTLFLLLTAPFLLFLSLLLLC----PHWIVPRTSSFRIPPPSSTHASPAYPT---GAGCREDEASDLPPPRLTPASFLPGMPDDQGGARAYLHALFQALGQNFLLPVYIVTVLLV--SGALGFFDTALAEHLGGCEGKEGGREG 333
            T S +MT   + PFFP Y KEN  A  T++G I +     Q ++ PL + +S +I+R   L L + IL  G  +F  S+    F+  R LQG+G+     A L+L+      I RD+GL+E    +G++ GP +GG+ + ++G +   +L     +L    + L        I   ++ + I P           T   G GC +  A               G     G       AL+Q+  +    PV  +   +V  + A GF + ALA HL    G +    G
Sbjct:   54 TLSTMMTVSLIAPFFPGYAKENLDAPETVIGLIVACNPFAQVMSTPLWSFLSTKISRSDRLSLGLSILAIGTIMFAYSNQVTTFMIARALQGIGSQGSNSAALALV------IERDLGLIEFIVGVGYMIGPAVGGISYRYFGFQIAVMLPAVICVLIACAVKLSFQHRETLIRSASNEYLIVPQEEEGEGEIRSTANVGEGCSQVSAGG-------------GSESQPGDTIVDKDALWQSWKRLTNPPVLCICFGIVAHAAAQGFKELALARHLKIALGADSSTAG 322          
BLAST of EWM21678.1 vs. NCBI_GenBank
Match: gi|585104612|gb|EWM23520.1| (permease (major facilitator superfamily), partial [Nannochloropsis gaditana])

HSP 1 Score: 73.9442 bits (180), Expect = 7.349e-12
Identity = 46/148 (31.08%), Postives = 74/148 (50.00%), Query Frame = 0
Query:   61 MTGCLGPFFPLYMKEN--FQATTTLVGFIFSVTSLVQFLTCPLVAHISHRITRLGSLRLAILILIGGGFIFGLSHHAAGFLAGRLLQGMGNGVLEVAGLSLLMRHSPDIRRDIGLLEGSSALGFLFGPLLGGLIFHWWGIRTLFLLLT 206
            +   LGPF+P Y   +    A++ +VG IF+   L Q LT P+   +S R  RL +    + +L G   +F L    +  +  R LQG     + V+  +L++  S  + RD+G+ E     G + GP LGG +F   G + +FL L+
Sbjct:   41 LVSILGPFYPPYATSSPSLHASSFMVGLIFAAYPLAQILTAPVAGSLSARYGRLPTCVGGLFLLTGSTVLFALGTRVSLHVLARFLQGSAGACVNVSAFALVLEVSQALPRDLGVQEVVVGAGCMVGPTLGGFLFESLGFQAMFLALS 188          
BLAST of EWM21678.1 vs. NCBI_GenBank
Match: gi|585105539|gb|EWM24167.1| (sugar transporter, partial [Nannochloropsis gaditana])

HSP 1 Score: 75.8702 bits (185), Expect = 1.969e-11
Identity = 45/152 (29.61%), Postives = 79/152 (51.97%), Query Frame = 0
Query:   65 LGPFFPLYMKENFQATTTLVGFIFSVTSLVQFLTCPLVAHISHRITRLGSLRLAILILIGGGFIFGLSHHAAGFLAGRLLQGMGNGVLEVAGLSLLMRHSPDIRRDIGLLEGSSALGFLFGPLLGGLIFHWWGIRTLFLLLTAPFLLFLSLL 216
            + PFF    +      ++LVG  FS+++L   L  PL AH+     R  +L L  ++ +     F LS  +   L+ R  QG+  G++ VA ++LL+  +PDI +++GL E   ++  +  P+LGG  +    +   +L L+AP L  + +L
Sbjct:  285 ISPFFQEDAQSRLGLPSSLVGLTFSLSALTSMLITPLAAHLCQAFGRYRTLFLGYVLALLANVGFALSRTSPSLLSFRSAQGLAMGLVAVASMTLLIAGAPDIVKEMGLQELVISVTLIIAPILGGGFYEVMSVERTYLALSAPLLGMVVVL 436          
BLAST of EWM21678.1 vs. NCBI_GenBank
Match: gi|406982626|gb|EKE03917.1| (major facilitator transporter [uncultured bacterium])

HSP 1 Score: 68.1662 bits (165), Expect = 4.589e-9
Identity = 58/174 (33.33%), Postives = 87/174 (50.00%), Query Frame = 0
Query:   63 GCLGPFFPLYMKENFQATTTLVGFIFSVTSLVQFLTCPLVAHISHRITRLGSLRLAILILIGGGFI----FGLSHHAAGFLAGRLLQGM--GNGVLEVAGLSLLMRHSPDIRRDIGLLEGSSALGFLFGPLLGGLIFHWWGIRTLFLLLT-APFLLFLSLLLLCPHWIVPRTSS 229
            G + P  P Y  E F A+ T +GF+F+  +L QFL  P+   IS    R    +LA++I   G FI    FGL++      AGR++ GM   N  +  A +S + +      +  GLL  +  LGF+ GP LGG++   WGI T  L+     FL  +++ L  P  +  RT +
Sbjct:   21 GFILPLLPFY-AEIFGASATTIGFLFASYALAQFLAVPIFGKISDTYGR----KLALMISTVGDFIGFLMFGLANSIFMLFAGRIISGMTGSNYAVAQAYISDVTKEEER-SKSFGLLGATFGLGFIVGPFLGGVL-SIWGIATPALVAAGVSFLNLIAIYLFLPESLNKRTKT 187          
BLAST of EWM21678.1 vs. NCBI_GenBank
Match: gi|1041546339|ref|XP_017301951.1| (PREDICTED: uncharacterized protein LOC103515020 [Diaphorina citri])

HSP 1 Score: 65.855 bits (159), Expect = 2.703e-8
Identity = 49/156 (31.41%), Postives = 73/156 (46.79%), Query Frame = 0
Query:   81 TTLVGFIFSVTSLVQFLTCPLVAHISHRITRLGSLRLAILILIGGGFIFGLSHHAAGFLAGRLLQGMGNGVLEVAGLSLLMRHSPDIRRD---IGLLEGSSALGFLFGPLLGGLIFHWWGIRTLFLLLTAPFLLFLSLLL----LCPHWIVPRTSS 229
            T  VG +F   + VQ L  PLV  ++HR+     +    +I+     IF            R LQG+G+    V+G+ +L    PD R     +G+  G  ALG L GP  GG+++ + G        TAPFL+  +L L     C + IV ++SS
Sbjct:  308 TKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG-------KTAPFLILSALALGDGCKCNYTIVQKSSS 456          
BLAST of EWM21678.1 vs. NCBI_GenBank
Match: gi|817725295|ref|WP_046678310.1| (MFS transporter [Paenibacillus sp. DMB20] >gi|817371031|gb|KKO54230.1| permease [Paenibacillus sp. DMB20])

HSP 1 Score: 65.0846 bits (157), Expect = 3.834e-8
Identity = 44/139 (31.65%), Postives = 68/139 (48.92%), Query Frame = 0
Query:   63 GCLGPFFPLYMKENFQATTTLVGFIFSVTSLVQFLTCPLVAHISHRITRLGSLRLAILILIGGGFIFGLSHHAAGFLAGRLLQGMGNGVLEVAGLSLLMRHSPDIRRD--IGLLEGSSALGFLFGPLLGGLIFHWWGIR 199
            G + P  P Y  E+  A+ T +G +FS  +L  F+  PL+  ++ ++ R G L   ++ L G   +F  +      +A R+LQG+       AGL+LL    P   R   +GL     A G L GP +GG +F W G +
Sbjct:   29 GLIVPILPSY-AESLGASQTRIGLLFSSYALTLFIATPLLGMLTDKVGRKGPLLWGMIGLAGTTVMFAFATEFWVLVAARMLQGIAAAATWTAGLALLADVYPSEERGAAMGLALSGQAAGTLLGPTVGGWLFEWGGYK 166          
The following BLAST results are available for this feature:
BLAST of EWM21678.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101952|gb|EWM21678.1|0.000e+0100.00Major facilitator superfamily domain protein [Nann... [more]
gi|585099635|gb|EWM20208.1|8.197e-5052.51major facilitator superfamily mfs_1 [Nannochlorops... [more]
gi|553177040|ref|XP_005852431.1|3.939e-4952.51major facilitator superfamily mfs 1, partial [Nann... [more]
gi|553183476|ref|XP_005853905.1|2.185e-2031.52permease (major facilitator superfamily) [Nannochl... [more]
gi|551678537|ref|XP_005842021.1|7.216e-1627.43hypothetical protein GUITHDRAFT_99681 [Guillardia ... [more]
gi|585104612|gb|EWM23520.1|7.349e-1231.08permease (major facilitator superfamily), partial ... [more]
gi|585105539|gb|EWM24167.1|1.969e-1129.61sugar transporter, partial [Nannochloropsis gadita... [more]
gi|406982626|gb|EKE03917.1|4.589e-933.33major facilitator transporter [uncultured bacteriu... [more]
gi|1041546339|ref|XP_017301951.1|2.703e-831.41PREDICTED: uncharacterized protein LOC103515020 [D... [more]
gi|817725295|ref|WP_046678310.1|3.834e-831.65MFS transporter [Paenibacillus sp. DMB20] >gi|8173... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9023rna9023Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications