EWM21684.1, cds8989 (CDS) Nannochloropsis gaditana

Overview
NameEWM21684.1
Unique Namecds8989
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:118337..118555 +
Alignment locationKK037251.1:118688..118843 +
Alignment locationKK037251.1:119042..119138 +

Link to JBrowse

Properties
Property NameValue
End range.
End range119138
Protein idEWM21684.1
Productglutamate-cysteine ligase
Partialtrue
Orig transcript idgnl|cribi|Naga_101376g2.10435.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:118337..118555 +
KK037251.1supercontigKK037251.1:118688..118843 +
KK037251.1supercontigKK037251.1:119042..119138 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006750glutathione biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004357glutamate-cysteine ligase activity
Vocabulary: INTERPRO
TermDefinition
IPR004308GCS
Homology
BLAST of EWM21684.1 vs. NCBI_GenBank
Match: gi|585101965|gb|EWM21684.1| (glutamate-cysteine ligase, partial [Nannochloropsis gaditana])

HSP 1 Score: 315.464 bits (807), Expect = 7.766e-109
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
Query:    1 MTQTASCRPPLWSTGLFLVCTRCSRDQNVPVPKRRPAGTTSSRPRRASVLSLLPLLFLLLLLTTGRTQAGLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKVDRSKRRVWLSLRGKEVMESLIKKEKDYTQRW 157
            MTQTASCRPPLWSTGLFLVCTRCSRDQNVPVPKRRPAGTTSSRPRRASVLSLLPLLFLLLLLTTGRTQAGLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKVDRSKRRVWLSLRGKEVMESLIKKEKDYTQRW
Sbjct:    1 MTQTASCRPPLWSTGLFLVCTRCSRDQNVPVPKRRPAGTTSSRPRRASVLSLLPLLFLLLLLTTGRTQAGLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKVDRSKRRVWLSLRGKEVMESLIKKEKDYTQRW 157          
BLAST of EWM21684.1 vs. NCBI_GenBank
Match: gi|219117900|ref|XP_002179736.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408789|gb|EEC48722.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 99.3673 bits (246), Expect = 2.446e-21
Identity = 55/132 (41.67%), Postives = 80/132 (60.61%), Query Frame = 0
Query:   34 RRPAGTTSSRPRRASVLSLLPLL--FLLLLLTTGRTQA--------GLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKVDRSKRRVWLSLRGKEVMESLIKKEKDYTQ 155
            RR     SS  +   + +LLP    FL  L+ + R  +        GLLKVG P  W  S   L  +R+AGVRQF++ Y+R+KD + D+LLWG+E+EYGI  +D + ++V LSLR KE+M+ L +KE  ++Q
Sbjct:    2 RRSQCIVSSNKKTTGIKTLLPRFQAFLWCLVFSSRFLSAEGLAIFMGLLKVGVPKSWDDSKKDLDYIRKAGVRQFVSTYNRVKDFKGDELLWGDEIEYGIFHMDHNAKKVRLSLRAKEIMDELNRKETLHSQ 133          
BLAST of EWM21684.1 vs. NCBI_GenBank
Match: gi|1072229413|gb|OEU14148.1| (gamma glutamylcysteine synthetase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 98.9821 bits (245), Expect = 3.539e-21
Identity = 46/86 (53.49%), Postives = 63/86 (73.26%), Query Frame = 0
Query:   70 GLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKVDRSKRRVWLSLRGKEVMESLIKKEKDYTQ 155
            GLLKVG P  W  S   L  +R+AGVRQF++ Y+R+KD++ D+LLWG+EVEYGI  +D   ++V LSLR KEVM+ L +KE  ++Q
Sbjct:    2 GLLKVGVPKSWDDSKKDLEYIRKAGVRQFISTYNRVKDLKGDELLWGDEVEYGIFHIDPETKKVRLSLRAKEVMDELNRKEAVHSQ 87          
BLAST of EWM21684.1 vs. NCBI_GenBank
Match: gi|1072229414|gb|OEU14149.1| (gamma glutamylcysteine synthetase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 98.5969 bits (244), Expect = 4.412e-21
Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = 0
Query:   68 QAGLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKVDRSKRRVWLSLRGKEVMESLIKKEKDYTQ 155
            + GLLKVG P  W  S   L  +R+AGVRQF++ Y+R+KD++ D+LLWG+EVEYGI  +D   ++V LSLR KEVM+ L +KE  ++Q
Sbjct:   41 KMGLLKVGVPKSWDDSKKDLEYIRKAGVRQFISTYNRVKDLKGDELLWGDEVEYGIFHIDPETKKVRLSLRAKEVMDELNRKEAVHSQ 128          
BLAST of EWM21684.1 vs. NCBI_GenBank
Match: gi|298707890|emb|CBJ30287.1| (Glutamate cysteine ligase [Ectocarpus siliculosus])

HSP 1 Score: 97.4413 bits (241), Expect = 1.224e-20
Identity = 47/109 (43.12%), Postives = 71/109 (65.14%), Query Frame = 0
Query:   48 SVLSLLPLLFLLLLLTTGRTQAGLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKVDRSKRRVWLSLRGKEVMESLIKKEKDYTQR 156
            SVL        LLL+  GR +AGLL+VG P+ W  ++PHL  VR  GV+QF++ Y +++ I+ D+L WG+E+EY ILKVD   +RV +S R  +V++ L  +E ++  R
Sbjct:    6 SVLGTARSAACLLLVAAGRGEAGLLRVGTPMPWGQAMPHLGYVRDHGVKQFVSRYRKVEGIENDELKWGDELEYAILKVDHVNKRVRVSTRAADVVKELQTREDEHAYR 114          
BLAST of EWM21684.1 vs. NCBI_GenBank
Match: gi|224015295|ref|XP_002297305.1| (glutamate-cysteine ligase, partial [Thalassiosira pseudonana CCMP1335] >gi|220968050|gb|EED86407.1| glutamate-cysteine ligase, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 95.9005 bits (237), Expect = 4.595e-20
Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 0
Query:   70 GLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKVDRSKRRVWLSLRGKEVMESLIKKE 150
            GLLKVG P  WP+S  +L  VR AGVRQF++ Y+R+KD++ DDL+WG+E+EYGI  +D   ++V LSLR KE+M++L   E
Sbjct:    1 GLLKVGTPQPWPTSKRNLNYVREAGVRQFISTYNRVKDLKGDDLVWGDEIEYGIFVLDDENKKVRLSLRAKEIMDNLNANE 81          
BLAST of EWM21684.1 vs. NCBI_GenBank
Match: gi|224005925|ref|XP_002291923.1| (glutamate-cysteine ligase, partial [Thalassiosira pseudonana CCMP1335] >gi|220972442|gb|EED90774.1| glutamate-cysteine ligase, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 95.5153 bits (236), Expect = 5.076e-20
Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 0
Query:   70 GLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKVDRSKRRVWLSLRGKEVMESLIKKE 150
            GLLKVG P  WP+S  +L  VR AGVRQF++ Y+R+KD++ DDL+WG+E+EYGI  +D   ++V LSLR KE+M++L   E
Sbjct:    1 GLLKVGTPQPWPTSKRNLNYVREAGVRQFISTYNRVKDLKGDDLVWGDEIEYGIFVLDDENKKVRLSLRAKEIMDNLNANE 81          
BLAST of EWM21684.1 vs. NCBI_GenBank
Match: gi|953500556|emb|CEG38265.1| (gamma-glutamylcysteine synthetase [Plasmopara halstedii])

HSP 1 Score: 95.1301 bits (235), Expect = 8.430e-20
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 0
Query:   70 GLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKVDRSKRRVWLSLRGKEVMESLIKKEKDYTQR 156
            GLL  G PL WP +L  L+ VR  G+ QFL+IYHR+KDI+ D+L WG+E+EYG+  +D+  +RV L+LRG E++  L  KEK   Q 
Sbjct:    2 GLLVEGSPLDWPDALEWLQHVRTQGIDQFLHIYHRVKDIEGDELKWGDELEYGVFHMDKETKRVRLALRGAEILHQLQIKEKKSEQH 88          
BLAST of EWM21684.1 vs. NCBI_GenBank
Match: gi|1173944732|gb|OQR93434.1| (glutamate-cysteine ligase catalytic subunit [Achlya hypogyna])

HSP 1 Score: 93.2041 bits (230), Expect = 3.386e-19
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = 0
Query:   70 GLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKVDRSKRRVWLSLRGKEVMESLIKKEKDY 153
            GLL VG PL W  +LP L  VRR G++QFL  YHR+KDI+ D L WG+E+EYGI ++D   +   LSLRG EV+  L+ KE+ +
Sbjct:    2 GLLVVGTPLRWEDALPWLHHVRRNGIQQFLETYHRVKDIRGDVLKWGDELEYGIFELDPETKTARLSLRGSEVLHELMDKEERF 85          
BLAST of EWM21684.1 vs. NCBI_GenBank
Match: gi|397596199|gb|EJK56710.1| (hypothetical protein THAOC_23355 [Thalassiosira oceanica])

HSP 1 Score: 93.2041 bits (230), Expect = 4.288e-19
Identity = 42/82 (51.22%), Postives = 62/82 (75.61%), Query Frame = 0
Query:   70 GLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKVDRSKRRVWLSLRGKEVMESLIKKEK 151
            GLLKVG P  W  S  +L  VR AGVRQF++ Y+R+KD++ D+L+WG+E+EYGI  +D   +++ LSLR K+VM++L +KE+
Sbjct:   63 GLLKVGVPQPWDKSKKNLNYVREAGVRQFISTYNRVKDLKGDELMWGDEIEYGIFVLDAQNKKIRLSLRAKDVMDNLNEKEE 144          
The following BLAST results are available for this feature:
BLAST of EWM21684.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101965|gb|EWM21684.1|7.766e-109100.00glutamate-cysteine ligase, partial [Nannochloropsi... [more]
gi|219117900|ref|XP_002179736.1|2.446e-2141.67predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072229413|gb|OEU14148.1|3.539e-2153.49gamma glutamylcysteine synthetase [Fragilariopsis ... [more]
gi|1072229414|gb|OEU14149.1|4.412e-2152.27gamma glutamylcysteine synthetase [Fragilariopsis ... [more]
gi|298707890|emb|CBJ30287.1|1.224e-2043.12Glutamate cysteine ligase [Ectocarpus siliculosus][more]
gi|224015295|ref|XP_002297305.1|4.595e-2054.32glutamate-cysteine ligase, partial [Thalassiosira ... [more]
gi|224005925|ref|XP_002291923.1|5.076e-2054.32glutamate-cysteine ligase, partial [Thalassiosira ... [more]
gi|953500556|emb|CEG38265.1|8.430e-2050.57gamma-glutamylcysteine synthetase [Plasmopara hals... [more]
gi|1173944732|gb|OQR93434.1|3.386e-1952.38glutamate-cysteine ligase catalytic subunit [Achly... [more]
gi|397596199|gb|EJK56710.1|4.288e-1951.22hypothetical protein THAOC_23355 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9019rna9019Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications