EWM21684.1, cds8989 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21684.1 vs. NCBI_GenBank
Match: gi|585101965|gb|EWM21684.1| (glutamate-cysteine ligase, partial [Nannochloropsis gaditana]) HSP 1 Score: 315.464 bits (807), Expect = 7.766e-109 Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
Query: 1 MTQTASCRPPLWSTGLFLVCTRCSRDQNVPVPKRRPAGTTSSRPRRASVLSLLPLLFLLLLLTTGRTQAGLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKVDRSKRRVWLSLRGKEVMESLIKKEKDYTQRW 157
MTQTASCRPPLWSTGLFLVCTRCSRDQNVPVPKRRPAGTTSSRPRRASVLSLLPLLFLLLLLTTGRTQAGLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKVDRSKRRVWLSLRGKEVMESLIKKEKDYTQRW
Sbjct: 1 MTQTASCRPPLWSTGLFLVCTRCSRDQNVPVPKRRPAGTTSSRPRRASVLSLLPLLFLLLLLTTGRTQAGLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKVDRSKRRVWLSLRGKEVMESLIKKEKDYTQRW 157
BLAST of EWM21684.1 vs. NCBI_GenBank
Match: gi|219117900|ref|XP_002179736.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408789|gb|EEC48722.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 99.3673 bits (246), Expect = 2.446e-21 Identity = 55/132 (41.67%), Postives = 80/132 (60.61%), Query Frame = 0
Query: 34 RRPAGTTSSRPRRASVLSLLPLL--FLLLLLTTGRTQA--------GLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKVDRSKRRVWLSLRGKEVMESLIKKEKDYTQ 155
RR SS + + +LLP FL L+ + R + GLLKVG P W S L +R+AGVRQF++ Y+R+KD + D+LLWG+E+EYGI +D + ++V LSLR KE+M+ L +KE ++Q
Sbjct: 2 RRSQCIVSSNKKTTGIKTLLPRFQAFLWCLVFSSRFLSAEGLAIFMGLLKVGVPKSWDDSKKDLDYIRKAGVRQFVSTYNRVKDFKGDELLWGDEIEYGIFHMDHNAKKVRLSLRAKEIMDELNRKETLHSQ 133
BLAST of EWM21684.1 vs. NCBI_GenBank
Match: gi|1072229413|gb|OEU14148.1| (gamma glutamylcysteine synthetase [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 98.9821 bits (245), Expect = 3.539e-21 Identity = 46/86 (53.49%), Postives = 63/86 (73.26%), Query Frame = 0
Query: 70 GLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKVDRSKRRVWLSLRGKEVMESLIKKEKDYTQ 155
GLLKVG P W S L +R+AGVRQF++ Y+R+KD++ D+LLWG+EVEYGI +D ++V LSLR KEVM+ L +KE ++Q
Sbjct: 2 GLLKVGVPKSWDDSKKDLEYIRKAGVRQFISTYNRVKDLKGDELLWGDEVEYGIFHIDPETKKVRLSLRAKEVMDELNRKEAVHSQ 87
BLAST of EWM21684.1 vs. NCBI_GenBank
Match: gi|1072229414|gb|OEU14149.1| (gamma glutamylcysteine synthetase [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 98.5969 bits (244), Expect = 4.412e-21 Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = 0
Query: 68 QAGLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKVDRSKRRVWLSLRGKEVMESLIKKEKDYTQ 155
+ GLLKVG P W S L +R+AGVRQF++ Y+R+KD++ D+LLWG+EVEYGI +D ++V LSLR KEVM+ L +KE ++Q
Sbjct: 41 KMGLLKVGVPKSWDDSKKDLEYIRKAGVRQFISTYNRVKDLKGDELLWGDEVEYGIFHIDPETKKVRLSLRAKEVMDELNRKEAVHSQ 128
BLAST of EWM21684.1 vs. NCBI_GenBank
Match: gi|298707890|emb|CBJ30287.1| (Glutamate cysteine ligase [Ectocarpus siliculosus]) HSP 1 Score: 97.4413 bits (241), Expect = 1.224e-20 Identity = 47/109 (43.12%), Postives = 71/109 (65.14%), Query Frame = 0
Query: 48 SVLSLLPLLFLLLLLTTGRTQAGLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKVDRSKRRVWLSLRGKEVMESLIKKEKDYTQR 156
SVL LLL+ GR +AGLL+VG P+ W ++PHL VR GV+QF++ Y +++ I+ D+L WG+E+EY ILKVD +RV +S R +V++ L +E ++ R
Sbjct: 6 SVLGTARSAACLLLVAAGRGEAGLLRVGTPMPWGQAMPHLGYVRDHGVKQFVSRYRKVEGIENDELKWGDELEYAILKVDHVNKRVRVSTRAADVVKELQTREDEHAYR 114
BLAST of EWM21684.1 vs. NCBI_GenBank
Match: gi|224015295|ref|XP_002297305.1| (glutamate-cysteine ligase, partial [Thalassiosira pseudonana CCMP1335] >gi|220968050|gb|EED86407.1| glutamate-cysteine ligase, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 95.9005 bits (237), Expect = 4.595e-20 Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 0
Query: 70 GLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKVDRSKRRVWLSLRGKEVMESLIKKE 150
GLLKVG P WP+S +L VR AGVRQF++ Y+R+KD++ DDL+WG+E+EYGI +D ++V LSLR KE+M++L E
Sbjct: 1 GLLKVGTPQPWPTSKRNLNYVREAGVRQFISTYNRVKDLKGDDLVWGDEIEYGIFVLDDENKKVRLSLRAKEIMDNLNANE 81
BLAST of EWM21684.1 vs. NCBI_GenBank
Match: gi|224005925|ref|XP_002291923.1| (glutamate-cysteine ligase, partial [Thalassiosira pseudonana CCMP1335] >gi|220972442|gb|EED90774.1| glutamate-cysteine ligase, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 95.5153 bits (236), Expect = 5.076e-20 Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 0
Query: 70 GLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKVDRSKRRVWLSLRGKEVMESLIKKE 150
GLLKVG P WP+S +L VR AGVRQF++ Y+R+KD++ DDL+WG+E+EYGI +D ++V LSLR KE+M++L E
Sbjct: 1 GLLKVGTPQPWPTSKRNLNYVREAGVRQFISTYNRVKDLKGDDLVWGDEIEYGIFVLDDENKKVRLSLRAKEIMDNLNANE 81
BLAST of EWM21684.1 vs. NCBI_GenBank
Match: gi|953500556|emb|CEG38265.1| (gamma-glutamylcysteine synthetase [Plasmopara halstedii]) HSP 1 Score: 95.1301 bits (235), Expect = 8.430e-20 Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 0
Query: 70 GLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKVDRSKRRVWLSLRGKEVMESLIKKEKDYTQR 156
GLL G PL WP +L L+ VR G+ QFL+IYHR+KDI+ D+L WG+E+EYG+ +D+ +RV L+LRG E++ L KEK Q
Sbjct: 2 GLLVEGSPLDWPDALEWLQHVRTQGIDQFLHIYHRVKDIEGDELKWGDELEYGVFHMDKETKRVRLALRGAEILHQLQIKEKKSEQH 88
BLAST of EWM21684.1 vs. NCBI_GenBank
Match: gi|1173944732|gb|OQR93434.1| (glutamate-cysteine ligase catalytic subunit [Achlya hypogyna]) HSP 1 Score: 93.2041 bits (230), Expect = 3.386e-19 Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = 0
Query: 70 GLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKVDRSKRRVWLSLRGKEVMESLIKKEKDY 153
GLL VG PL W +LP L VRR G++QFL YHR+KDI+ D L WG+E+EYGI ++D + LSLRG EV+ L+ KE+ +
Sbjct: 2 GLLVVGTPLRWEDALPWLHHVRRNGIQQFLETYHRVKDIRGDVLKWGDELEYGIFELDPETKTARLSLRGSEVLHELMDKEERF 85
BLAST of EWM21684.1 vs. NCBI_GenBank
Match: gi|397596199|gb|EJK56710.1| (hypothetical protein THAOC_23355 [Thalassiosira oceanica]) HSP 1 Score: 93.2041 bits (230), Expect = 4.288e-19 Identity = 42/82 (51.22%), Postives = 62/82 (75.61%), Query Frame = 0
Query: 70 GLLKVGRPLFWPSSLPHLRPVRRAGVRQFLNIYHRLKDIQQDDLLWGEEVEYGILKVDRSKRRVWLSLRGKEVMESLIKKEK 151
GLLKVG P W S +L VR AGVRQF++ Y+R+KD++ D+L+WG+E+EYGI +D +++ LSLR K+VM++L +KE+
Sbjct: 63 GLLKVGVPQPWDKSKKNLNYVREAGVRQFISTYNRVKDLKGDELMWGDEIEYGIFVLDAQNKKIRLSLRAKDVMDNLNEKEE 144 The following BLAST results are available for this feature:
BLAST of EWM21684.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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