EWM21696.1, cds8977 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM21696.1
Unique Name	cds8977
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037251.1:95402..95409 -
Alignment location	KK037251.1:95181..95335 -
Alignment location	KK037251.1:94991..95139 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM21696.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100723g3.5248.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:95402..95409 -
KK037251.1	supercontig	KK037251.1:95181..95335 -
KK037251.1	supercontig	KK037251.1:94991..95139 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM21696.1 vs. NCBI_GenBank
Match: gi|585101986|gb|EWM21696.1| (hypothetical protein Naga_100723g3 [Nannochloropsis gaditana])

HSP 1 Score: 216.083 bits (549), Expect = 2.650e-71
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query:    1 MTVLTRRAAIDWRFVENLPWSSAPQKHHAHSRQLPSTSSVLVRPFFFRFGRADLICVATNILNLHTPASRGDMKGSQEPPAGIPRGSFQPVCVSQSYFSYCAM 103
            MTVLTRRAAIDWRFVENLPWSSAPQKHHAHSRQLPSTSSVLVRPFFFRFGRADLICVATNILNLHTPASRGDMKGSQEPPAGIPRGSFQPVCVSQSYFSYCAM
Sbjct:    1 MTVLTRRAAIDWRFVENLPWSSAPQKHHAHSRQLPSTSSVLVRPFFFRFGRADLICVATNILNLHTPASRGDMKGSQEPPAGIPRGSFQPVCVSQSYFSYCAM 103

The following BLAST results are available for this feature:

BLAST of EWM21696.1 vs. NCBI_GenBank

BLAST of EWM21696.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585101986\|gb\|EWM21696.1\|	2.650e-71	100.00	hypothetical protein Naga_100723g3 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna9007	rna9007	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications