EWM21708.1, cds8964 (CDS) Nannochloropsis gaditana

Overview
NameEWM21708.1
Unique Namecds8964
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:39413..39462 +
Alignment locationKK037251.1:39672..39812 +
Alignment locationKK037251.1:39984..40180 +
Alignment locationKK037251.1:40294..40386 +
Alignment locationKK037251.1:40579..40795 +
Alignment locationKK037251.1:40901..41120 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21708.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100775g1.7633.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:39413..39462 +
KK037251.1supercontigKK037251.1:39672..39812 +
KK037251.1supercontigKK037251.1:39984..40180 +
KK037251.1supercontigKK037251.1:40294..40386 +
KK037251.1supercontigKK037251.1:40579..40795 +
KK037251.1supercontigKK037251.1:40901..41120 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM21708.1 vs. NCBI_GenBank
Match: gi|585102021|gb|EWM21708.1| (hypothetical protein Naga_100775g1 [Nannochloropsis gaditana])

HSP 1 Score: 604.749 bits (1558), Expect = 0.000e+0
Identity = 305/305 (100.00%), Postives = 305/305 (100.00%), Query Frame = 0 
Query:    1 MGHHRPCPRYPQSQGNHSPSPAVAEESAGSGGRDRHHSYASYSPTAAVLRGVADKVQRFGEGVRNSTLSRNFSSNKLHKDGADAREREGGRESSTSRADRRDSSNVHPGSTSSLNALPSLDSHHHKHHKGVQEFGVIGEELYSRMDIEAFLMIVRGFQPAEPATTSTSSVKLERPTALRAAAAAAVASSKTVPPALGLGGGGGGLEGGREGGREAGSSLPPLSKATFQPPSPMPTALSVKIRSVVASEEGKAGGGKEESKGTGAAGDPETVLARRRREEDGETEDRRRPGGMRDGINGAGHEGRL 305
            MGHHRPCPRYPQSQGNHSPSPAVAEESAGSGGRDRHHSYASYSPTAAVLRGVADKVQRFGEGVRNSTLSRNFSSNKLHKDGADAREREGGRESSTSRADRRDSSNVHPGSTSSLNALPSLDSHHHKHHKGVQEFGVIGEELYSRMDIEAFLMIVRGFQPAEPATTSTSSVKLERPTALRAAAAAAVASSKTVPPALGLGGGGGGLEGGREGGREAGSSLPPLSKATFQPPSPMPTALSVKIRSVVASEEGKAGGGKEESKGTGAAGDPETVLARRRREEDGETEDRRRPGGMRDGINGAGHEGRL
Sbjct:    1 MGHHRPCPRYPQSQGNHSPSPAVAEESAGSGGRDRHHSYASYSPTAAVLRGVADKVQRFGEGVRNSTLSRNFSSNKLHKDGADAREREGGRESSTSRADRRDSSNVHPGSTSSLNALPSLDSHHHKHHKGVQEFGVIGEELYSRMDIEAFLMIVRGFQPAEPATTSTSSVKLERPTALRAAAAAAVASSKTVPPALGLGGGGGGLEGGREGGREAGSSLPPLSKATFQPPSPMPTALSVKIRSVVASEEGKAGGGKEESKGTGAAGDPETVLARRRREEDGETEDRRRPGGMRDGINGAGHEGRL 305
[Close]
BLAST of EWM21708.1 vs. NCBI_GenBank
Match: gi|553183897|ref|XP_005853988.1| (hypothetical protein NGA_0454500 [Nannochloropsis gaditana CCMP526] >gi|422295074|gb|EKU22373.1| hypothetical protein NGA_0454500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 135.961 bits (341), Expect = 5.820e-37
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 0 
Query:  233 MPTALSVKIRSVVASEEGKAGGGKEESKGTGAAGDPETVLARRRREEDGETEDRRRPGGMRDGINGAGHEGRL 305
            MPTALSVKIRSVVASEEGKAGGGKEESKG+GAAG PETVLARRRREEDGETEDRRRPGG+RDGINGAGHEGRL
Sbjct:    1 MPTALSVKIRSVVASEEGKAGGGKEESKGSGAAGGPETVLARRRREEDGETEDRRRPGGVRDGINGAGHEGRL 73
The following BLAST results are available for this feature:
BLAST of EWM21708.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585102021|gb|EWM21708.1|0.000e+0100.00hypothetical protein Naga_100775g1 [Nannochloropsi... [more]
gi|553183897|ref|XP_005853988.1|5.820e-3795.89hypothetical protein NGA_0454500 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8994rna8994Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications