EWM21714.1, cds8959 (CDS) Nannochloropsis gaditana

Overview
NameEWM21714.1
Unique Namecds8959
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:25861..25952 -
Alignment locationKK037251.1:25599..25683 -
Alignment locationKK037251.1:25267..25355 -
Alignment locationKK037251.1:24847..25021 -
Alignment locationKK037251.1:24610..24687 -
Alignment locationKK037251.1:23963..24340 -

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Properties
Property NameValue
Protein idEWM21714.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100183g6.8961.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:25861..25952 -
KK037251.1supercontigKK037251.1:25599..25683 -
KK037251.1supercontigKK037251.1:25267..25355 -
KK037251.1supercontigKK037251.1:24847..25021 -
KK037251.1supercontigKK037251.1:24610..24687 -
KK037251.1supercontigKK037251.1:23963..24340 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM21714.1 vs. NCBI_GenBank
Match: gi|585102031|gb|EWM21714.1| (hypothetical protein Naga_100183g6 [Nannochloropsis gaditana])

HSP 1 Score: 611.298 bits (1575), Expect = 0.000e+0
Identity = 298/298 (100.00%), Postives = 298/298 (100.00%), Query Frame = 0 
Query:    1 MDTCAPSSTPLRQKKVSPVAVTEAEETRLLRTLALCTAGILLLDIWSWIWPGVLGGSEMHAASDFDPSSFFYLLPITLHVMAGLWFFTSKQHPPLPFWRRVVCLRLFSFLCLALAVPALIARVVTLRTYCLLEGRVTADTTEGDVFKACTDVRMNNTSLIAVIYAILGVCMVQALNELESLCTWRHQQQCSTAPYPRSHYFSRPSCWATGAGSICASTQQASDDGDGHDGAEALLYHTLSASDDNRCLFGDASMYGERTTPLLPAPVPSSLTPPPSTGHVMGSSERSAFSSYVVGSCV 298
            MDTCAPSSTPLRQKKVSPVAVTEAEETRLLRTLALCTAGILLLDIWSWIWPGVLGGSEMHAASDFDPSSFFYLLPITLHVMAGLWFFTSKQHPPLPFWRRVVCLRLFSFLCLALAVPALIARVVTLRTYCLLEGRVTADTTEGDVFKACTDVRMNNTSLIAVIYAILGVCMVQALNELESLCTWRHQQQCSTAPYPRSHYFSRPSCWATGAGSICASTQQASDDGDGHDGAEALLYHTLSASDDNRCLFGDASMYGERTTPLLPAPVPSSLTPPPSTGHVMGSSERSAFSSYVVGSCV
Sbjct:    1 MDTCAPSSTPLRQKKVSPVAVTEAEETRLLRTLALCTAGILLLDIWSWIWPGVLGGSEMHAASDFDPSSFFYLLPITLHVMAGLWFFTSKQHPPLPFWRRVVCLRLFSFLCLALAVPALIARVVTLRTYCLLEGRVTADTTEGDVFKACTDVRMNNTSLIAVIYAILGVCMVQALNELESLCTWRHQQQCSTAPYPRSHYFSRPSCWATGAGSICASTQQASDDGDGHDGAEALLYHTLSASDDNRCLFGDASMYGERTTPLLPAPVPSSLTPPPSTGHVMGSSERSAFSSYVVGSCV 298
[Close]
BLAST of EWM21714.1 vs. NCBI_GenBank
Match: gi|553184221|ref|XP_005854053.1| (hypothetical protein NGA_0111202 [Nannochloropsis gaditana CCMP526] >gi|553190586|ref|XP_005855222.1| hypothetical protein NGA_0111201 [Nannochloropsis gaditana CCMP526] >gi|422293844|gb|EKU21144.1| hypothetical protein NGA_0111201 [Nannochloropsis gaditana CCMP526] >gi|422295013|gb|EKU22312.1| hypothetical protein NGA_0111202 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 56.225 bits (134), Expect = 4.278e-7
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 
Query:  147 KACTDVRMNNTSLIAVIYAILGVCMVQ 173
            KACTDVRMNNTSLIAVIYAILGVCMVQ
Sbjct:   38 KACTDVRMNNTSLIAVIYAILGVCMVQ 64
The following BLAST results are available for this feature:
BLAST of EWM21714.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585102031|gb|EWM21714.1|0.000e+0100.00hypothetical protein Naga_100183g6 [Nannochloropsi... [more]
gi|553184221|ref|XP_005854053.1|4.278e-7100.00hypothetical protein NGA_0111202 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8989rna8989Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications