EWM21751.1, cds8919 (CDS) Nannochloropsis gaditana

Overview
NameEWM21751.1
Unique Namecds8919
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:544994..545200 -
Alignment locationKK037250.1:544589..544824 -
Alignment locationKK037250.1:544044..544163 -
Alignment locationKK037250.1:543904..543988 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21751.1
Productcytochrome b561
Orig transcript idgnl|cribi|Naga_100213g5.9985.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:544994..545200 -
KK037250.1supercontigKK037250.1:544589..544824 -
KK037250.1supercontigKK037250.1:544044..544163 -
KK037250.1supercontigKK037250.1:543904..543988 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0006091generation of precursor metabolites and energy
GO:0022904respiratory electron transport chain
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR016174Di-haem_cyt_TM
Homology
BLAST of EWM21751.1 vs. NCBI_GenBank
Match: gi|585102083|gb|EWM21751.1| (cytochrome b561 [Nannochloropsis gaditana])

HSP 1 Score: 431.409 bits (1108), Expect = 6.903e-153
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0
Query:    1 MAMLHRITMAPRVRSLVSCRPLSTAASSPPPPSEPGAAGTILAGPIAYSKALSLFHWLVGFTMIGSVGAVLQAQQVKGKEKGVWMHRHKSLGLLAGMLVAPRFIFRLTSKVPAPMKEWSTMEQLASKFTHLSLYGLMVGMPATGIAMGYYGGKGLPFFWTKFDGAATANGEVAKQAFSIHKTMGTYGKPSSPGSIPSAEPSWFEKGEPLKRAGLK 215
            MAMLHRITMAPRVRSLVSCRPLSTAASSPPPPSEPGAAGTILAGPIAYSKALSLFHWLVGFTMIGSVGAVLQAQQVKGKEKGVWMHRHKSLGLLAGMLVAPRFIFRLTSKVPAPMKEWSTMEQLASKFTHLSLYGLMVGMPATGIAMGYYGGKGLPFFWTKFDGAATANGEVAKQAFSIHKTMGTYGKPSSPGSIPSAEPSWFEKGEPLKRAGLK
Sbjct:    1 MAMLHRITMAPRVRSLVSCRPLSTAASSPPPPSEPGAAGTILAGPIAYSKALSLFHWLVGFTMIGSVGAVLQAQQVKGKEKGVWMHRHKSLGLLAGMLVAPRFIFRLTSKVPAPMKEWSTMEQLASKFTHLSLYGLMVGMPATGIAMGYYGGKGLPFFWTKFDGAATANGEVAKQAFSIHKTMGTYGKPSSPGSIPSAEPSWFEKGEPLKRAGLK 215          
BLAST of EWM21751.1 vs. NCBI_GenBank
Match: gi|553191094|ref|XP_005855319.1| (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [Nannochloropsis gaditana CCMP526] >gi|422293738|gb|EKU21038.1| 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 331.257 bits (848), Expect = 4.763e-111
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
Query:   27 SSPPPPSEPGAAGTILAGPIAYSKALSLFHWLVGFTMIGSVGAVLQAQQVKGKEKGVWMHRHKSLGLLAGMLVAPRFIFRLTSKVPAPMKEWSTMEQLASKFTHLSLYGLMVGMPATGIAMGYYGGKGLPFFWTKFDGAATANGEVAKQAFSIHKTMGTYGK 188
            SSPPPPSEPGAAGTILAGPIAYSKALSLFHWLVGFTMIGSVGAVLQAQQVKGKEKGVWMHRHKSLGLLAGMLVAPRFIFRLTSKVPAPMKEWSTMEQLASKFTHLSLYGLMVGMPATGIAMGYYGGKGLPFFWTKFDGAATANGEVAKQAFSIHKTMGTYGK
Sbjct:  169 SSPPPPSEPGAAGTILAGPIAYSKALSLFHWLVGFTMIGSVGAVLQAQQVKGKEKGVWMHRHKSLGLLAGMLVAPRFIFRLTSKVPAPMKEWSTMEQLASKFTHLSLYGLMVGMPATGIAMGYYGGKGLPFFWTKFDGAATANGEVAKQAFSIHKTMGTYGK 330          
BLAST of EWM21751.1 vs. NCBI_GenBank
Match: gi|1072236047|gb|OEU20775.1| (Ni_hydr_CYTB-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 151.369 bits (381), Expect = 1.200e-42
Identity = 76/151 (50.33%), Postives = 101/151 (66.89%), Query Frame = 0
Query:   47 AYSKALSLFHWLVGFTMIGSVGAVLQAQQVKGKEKGVWMHRHKSLGLLAGMLVAPRFIFRLTSKVPAPMKEW---STMEQLASKFTHLSLYGLMVGMPATGIAMGYYGGKGLPFFWT------KFDGAATANGEVAKQAFSIHKTMGTYGK 188
            +Y+   S  HWL   TMIG VG VL+AQ+   ++KG WM RHKSLGLL GM++APR  +R+ ++    ++E    S++E + +K +H  LY  M  MPA+GIAMGYYGGKGLPFF T      K D    + GE+AKQ++ IHKT+GTYGK
Sbjct:    7 SYTVTASSLHWLSAGTMIGCVGCVLKAQESPKEDKGTWMFRHKSLGLLTGMIIAPRLAYRIFNRSAYKIEELAGASSIEHILAKISHGGLYAFMAIMPASGIAMGYYGGKGLPFFTTTLPGVVKTDENKKSTGEIAKQSYKIHKTLGTYGK 157          
BLAST of EWM21751.1 vs. NCBI_GenBank
Match: gi|929771268|ref|XP_014160567.1| (hypothetical protein SARC_01202 [Sphaeroforma arctica JP610] >gi|906958504|gb|KNC86665.1| hypothetical protein SARC_01202 [Sphaeroforma arctica JP610])

HSP 1 Score: 146.747 bits (369), Expect = 2.026e-40
Identity = 82/162 (50.62%), Postives = 103/162 (63.58%), Query Frame = 0
Query:   48 YSKALSLFHWLVGFTMIGSVGAVLQAQQVKGKEKGVWMHRHKSLGLLAGMLVAPRFIFRLTSKVPAPMKEWSTMEQLASKFTHLSLYGLMVGMPATGIAMGYYGGKGLPFFWTKFDGAATANGEVAKQAFSIHKTMGTYGKPSSPGSIPSAEPSWFEKGEPL 209
            YSKA+S  HWL    ++G VG VL AQ +KGK +G  M  HKSLGLL G++ APR    LTS+ PA     S    LA+  TH  LYG ++ MPATG+AMGYYGG GLPFFWTK  GAA A+  ++  AF +HK +G YGK   P  + +A  S F +GE +
Sbjct:   52 YSKAMSYMHWLTVPAVLGCVGTVLYAQTLKGKPRGNMMFWHKSLGLLTGIIAAPRVAVMLTSRKPAAFNTNSIKAALAAA-THYGLYGFLIIMPATGVAMGYYGGFGLPFFWTKLSGAAEADKSISGPAFKVHKFVGYYGKFLIPLHVGAAGFS-FARGEAI 211          
BLAST of EWM21751.1 vs. NCBI_GenBank
Match: gi|224008779|ref|XP_002293348.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970748|gb|EED89084.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 145.591 bits (366), Expect = 2.108e-40
Identity = 78/152 (51.32%), Postives = 100/152 (65.79%), Query Frame = 0
Query:   47 AYSKALSLFHWLVGFTMIGSVGAVLQAQQVKGKEKGVWMHRHKSLGLLAGMLVAPRFIFRLTS----KVPAPMKEWSTMEQLASKFTHLSLYGLMVGMPATGIAMGYYGGKGLPFFWTKFDGAATAN------GEVAKQAFSIHKTMGTYGK 188
            AYS A S +HW+V   ++GS+ +VL+ QQ   +EKG WM RHKSLGLL G++VAPR  +R+ +    ++  P        +LA   +H  LYG M  MPATGIAMGYYGG GLPFFWT   GA+  +      G +AKQ+FSIHKT+GTYGK
Sbjct:    6 AYSIAASYYHWVVAVPLMGSIASVLKCQQSPKEEKGKWMFRHKSLGLLTGLVVAPRLGYRIFNAAKYQIGHPAGTGPIEGKLADA-SHFLLYGFMTIMPATGIAMGYYGGNGLPFFWTTIPGASRTDENKATYGNIAKQSFSIHKTLGTYGK 156          
BLAST of EWM21751.1 vs. NCBI_GenBank
Match: gi|1210514497|dbj|GAX26606.1| (hypothetical protein FisN_21Lh073 [Fistulifera solaris])

HSP 1 Score: 144.436 bits (363), Expect = 4.774e-40
Identity = 76/150 (50.67%), Postives = 92/150 (61.33%), Query Frame = 0
Query:   46 IAYSKALSLFHWLVGFTMIGSVGAVLQAQQVKGKEKGVWMHRHKSLGLLAGMLVAPRFIFRLTSKVPAP---MKEWSTMEQLASKFTHLSLYGLMVGMPATGIAMGYYGGKGLPFFWTKFDGAATANGEVAKQAFSIHKTMGTYGKPSSP 192
            +AY+     FHW+    +IG VG VL+AQQ   +EKG WM RHKSLGLL GM+VAPR  +R+  +       +   S+ E + +K  H  LY  M  MPATGIAMG YGGKGLPFFWT F G    NG +AK  F IHK +G YGK   P
Sbjct:    6 MAYAMGARWFHWMTAVPLIGCVGTVLKAQQAPKEEKGKWMFRHKSLGLLTGMIVAPRVAYRIMGRSGYNVIGLPGTSSTESVLAKAGHAFLYVFMTVMPATGIAMGLYGGKGLPFFWTTFAGFEQTNGTIAKNTFQIHKQLGVYGKYMIP 155          
BLAST of EWM21751.1 vs. NCBI_GenBank
Match: gi|1210517842|dbj|GAX23243.1| (hypothetical protein FisN_21Hh073 [Fistulifera solaris])

HSP 1 Score: 143.665 bits (361), Expect = 1.042e-39
Identity = 75/150 (50.00%), Postives = 92/150 (61.33%), Query Frame = 0
Query:   46 IAYSKALSLFHWLVGFTMIGSVGAVLQAQQVKGKEKGVWMHRHKSLGLLAGMLVAPRFIFRLTSKVPAP---MKEWSTMEQLASKFTHLSLYGLMVGMPATGIAMGYYGGKGLPFFWTKFDGAATANGEVAKQAFSIHKTMGTYGKPSSP 192
            +AY+     FHW+    +IG VG VL+AQQ   ++KG WM RHKSLGLL GM+VAPR  +R+  +       +   S+ E + +K  H  LY  M  MPATGIAMG YGGKGLPFFWT F G    NG +AK  F IHK +G YGK   P
Sbjct:    6 MAYAMGARWFHWMTAVPLIGCVGTVLKAQQAPKEDKGKWMFRHKSLGLLTGMIVAPRVAYRIMGRSGYNVIGLPGTSSTESVLAKAGHAFLYVFMTVMPATGIAMGLYGGKGLPFFWTTFAGFEQTNGTIAKNTFQIHKQLGVYGKYMIP 155          
BLAST of EWM21751.1 vs. NCBI_GenBank
Match: gi|514681116|ref|XP_004988144.1| (hypothetical protein PTSG_10608 [Salpingoeca rosetta] >gi|326434784|gb|EGD80354.1| hypothetical protein PTSG_10608 [Salpingoeca rosetta])

HSP 1 Score: 122.865 bits (307), Expect = 1.890e-30
Identity = 66/138 (47.83%), Postives = 81/138 (58.70%), Query Frame = 0
Query:   48 YSKALSLFHWLVGFTMIGSVGAVLQAQQVKGKEK-GVWMHRHKSLGLLAGMLVAPRFIFRLTSKVPAPMKEWSTMEQLASKFTHLSLYGLMVGMPATGIAMGYYGGKGLPFFWTKFDGAATANGEVAKQAFSIHKTMG 184
            YS+ +   HWLVG  M+  V  V  AQ  + K+K G +M  HKS  LL   LV PR   RL SK+P  +   S  EQLA  F+H  +Y  M+GMP TGI MGY+GGKGLPF+     G  T N +VA  AF +HK MG
Sbjct:   72 YSRRMQALHWLVGAGMLTCVATVKMAQWTEDKKKKGQYMMIHKSTALLVAALVVPRVAIRLASKMPKALPGTSKFEQLAGSFSHFLMYVAMIGMPVTGITMGYFGGKGLPFYGAHIPGTDTPNKKVAGTAFKVHKKMG 209          
BLAST of EWM21751.1 vs. NCBI_GenBank
Match: gi|255081294|ref|XP_002507869.1| (predicted protein [Micromonas commoda] >gi|226523145|gb|ACO69127.1| predicted protein [Micromonas commoda])

HSP 1 Score: 112.079 bits (279), Expect = 9.545e-27
Identity = 68/169 (40.24%), Postives = 94/169 (55.62%), Query Frame = 0
Query:   32 PSEPG-------AAGTILAGPIA----YSKALSLFHWLVGFTMIGSVGAVLQAQQV---KGKEKGVWMHRHKSLGLLAGMLVAPRFIFRLTSKVPAPMKEWSTMEQLASKFTHLSLYGLMVGMPATGIAMGYYGGKGLPFFWTKFDGAATANGEVAKQAFSIHKTMGTY 186
            P+ PG       +AGTI     A    Y+  L   HWL+    +G+   V  A  +   +  EKG +M  HKSLGL    L  PR   RLT+K+PA +   S  EQ+A++  HL +YG+M  MP +G  MGYYGG+GLPFF     GA+  +G++A +AF +HK +G Y
Sbjct:   57 PANPGTSRGFAASAGTIAEAASALEQQYATPLQALHWLIAGGTVGTFAFVQLAMNLPKDQAAEKGRFMMLHKSLGLCVLGLTIPRLALRLTTKIPAAV-PGSKAEQIAAQLGHLVMYGMMTAMPVSGFIMGYYGGRGLPFFGYTIPGASKRDGKLAGRAFKLHKQLGWY 224          
BLAST of EWM21751.1 vs. NCBI_GenBank
Match: gi|1183426229|gb|ORY50533.1| (hypothetical protein BCR33DRAFT_846987 [Rhizoclosmatium globosum])

HSP 1 Score: 103.99 bits (258), Expect = 1.943e-24
Identity = 60/145 (41.38%), Postives = 84/145 (57.93%), Query Frame = 0
Query:   42 LAGPIAYSKALSLFHWLVGFTMIGSVGAVLQAQQVKGKE-KGVWMHRHKSLGLLAGMLVAPRFIFRLTSKVPAPMKEWSTMEQLASKFTHLSLYGLMVGMPATGIAMGYYGGKGLPFFWTKF-DGAATANGEVAKQAFSIHKTMG 184
            +A P+AYS+A+S  HW +G  M+G +G V  +Q  + K  K  +M+ HKSL ++    V  R   R  SK+PA +     + Q A    H++LYG M+GMPA+G+AMGYY G G+PFF   F  GA T N  +  Q +  H  MG
Sbjct:    1 MAAPLAYSRAMSAMHWGIGGLMLGCIGTVKASQNTQDKALKAKYMNWHKSLAVIVAFAVPARIGLRFASKIPAHIPGPKVI-QWAGDAGHIALYGFMIGMPASGLAMGYYSGYGVPFFSGTFLKGAETPNKALGGQLYFAHNIMG 144          
The following BLAST results are available for this feature:
BLAST of EWM21751.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102083|gb|EWM21751.1|6.903e-153100.00cytochrome b561 [Nannochloropsis gaditana][more]
gi|553191094|ref|XP_005855319.1|4.763e-111100.001,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
gi|1072236047|gb|OEU20775.1|1.200e-4250.33Ni_hydr_CYTB-domain-containing protein [Fragilario... [more]
gi|929771268|ref|XP_014160567.1|2.026e-4050.62hypothetical protein SARC_01202 [Sphaeroforma arct... [more]
gi|224008779|ref|XP_002293348.1|2.108e-4051.32predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210514497|dbj|GAX26606.1|4.774e-4050.67hypothetical protein FisN_21Lh073 [Fistulifera sol... [more]
gi|1210517842|dbj|GAX23243.1|1.042e-3950.00hypothetical protein FisN_21Hh073 [Fistulifera sol... [more]
gi|514681116|ref|XP_004988144.1|1.890e-3047.83hypothetical protein PTSG_10608 [Salpingoeca roset... [more]
gi|255081294|ref|XP_002507869.1|9.545e-2740.24predicted protein [Micromonas commoda] >gi|2265231... [more]
gi|1183426229|gb|ORY50533.1|1.943e-2441.38hypothetical protein BCR33DRAFT_846987 [Rhizoclosm... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8949rna8949Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications