EWM21758.1, cds8916 (CDS) Nannochloropsis gaditana

Overview
NameEWM21758.1
Unique Namecds8916
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:540356..540388 +
Alignment locationKK037250.1:540527..541279 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21758.1
Product26s proteasome non-atpase regulatory subunit 9
Orig transcript idgnl|cribi|Naga_100213g2.9992.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:540356..540388 +
KK037250.1supercontigKK037250.1:540527..541279 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
Homology
BLAST of EWM21758.1 vs. NCBI_GenBank
Match: gi|585102090|gb|EWM21758.1| (26s proteasome non-atpase regulatory subunit 9 [Nannochloropsis gaditana])

HSP 1 Score: 535.413 bits (1378), Expect = 0.000e+0
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0
Query:    1 MHYDARSELEELIKERDNLETEAAVIKDFLTSPGPGGAAPPGLGGVPLVDAEGFPRADIDVWDVRVKRNRLACIDTDHAELMKRIEELVQRLHQEAKTSAGVRGMSNNWSTSSSTGRDIGALSYTRTEESQVETVPKPTACMEVENRSMEEGGGPSRQQPFAVIDQVFRASPAEEAGLKNGDLLVSLGTVNAQNHNNFAAIVALVQENEGRVLRVEVQRPQEASAGGPSSAPRKETVVMSLIPHAWSGRGLLGCHLTAVSS 261
            MHYDARSELEELIKERDNLETEAAVIKDFLTSPGPGGAAPPGLGGVPLVDAEGFPRADIDVWDVRVKRNRLACIDTDHAELMKRIEELVQRLHQEAKTSAGVRGMSNNWSTSSSTGRDIGALSYTRTEESQVETVPKPTACMEVENRSMEEGGGPSRQQPFAVIDQVFRASPAEEAGLKNGDLLVSLGTVNAQNHNNFAAIVALVQENEGRVLRVEVQRPQEASAGGPSSAPRKETVVMSLIPHAWSGRGLLGCHLTAVSS
Sbjct:    1 MHYDARSELEELIKERDNLETEAAVIKDFLTSPGPGGAAPPGLGGVPLVDAEGFPRADIDVWDVRVKRNRLACIDTDHAELMKRIEELVQRLHQEAKTSAGVRGMSNNWSTSSSTGRDIGALSYTRTEESQVETVPKPTACMEVENRSMEEGGGPSRQQPFAVIDQVFRASPAEEAGLKNGDLLVSLGTVNAQNHNNFAAIVALVQENEGRVLRVEVQRPQEASAGGPSSAPRKETVVMSLIPHAWSGRGLLGCHLTAVSS 261          
BLAST of EWM21758.1 vs. NCBI_GenBank
Match: gi|553191114|ref|XP_005855324.1| (26s proteasome non-atpase regulatory subunit [Nannochloropsis gaditana CCMP526] >gi|422293743|gb|EKU21043.1| 26s proteasome non-atpase regulatory subunit [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 230.335 bits (586), Expect = 4.590e-74
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
Query:  149 MEEGGGPSRQQPFAVIDQVFRASPAEEAGLKNGDLLVSLGTVNAQNHNNFAAIVALVQENEGRVLRVEVQRPQEASAGGPSSAPRKETVVMSLIPHAWSGRGLLGCHLTAVSS 261
            MEEGGGPSRQQPFAVIDQVFRASPAEEAGLKNGDLLVSLGTVNAQNHNNFAAIVALVQENEGRVLRVEVQRPQEASAGGPSSAPRKETVVMSLIPHAWSGRGLLGCHLTAVSS
Sbjct:    1 MEEGGGPSRQQPFAVIDQVFRASPAEEAGLKNGDLLVSLGTVNAQNHNNFAAIVALVQENEGRVLRVEVQRPQEASAGGPSSAPRKETVVMSLIPHAWSGRGLLGCHLTAVSS 113          
BLAST of EWM21758.1 vs. NCBI_GenBank
Match: gi|403361144|gb|EJY80269.1| (Proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 139.043 bits (349), Expect = 1.142e-36
Identity = 92/251 (36.65%), Postives = 137/251 (54.58%), Query Frame = 0
Query:    6 RSELEELIKERDNLETEAAVIKDFLTSPGPGGAAPPGLGGVPLVDAEGFPRADIDVWDVRVKRNRLACIDTDHAELMKRIEELVQRLHQEAKTSAGVRGMSNNWSTSSSTGRDIGALSYTRTEESQVETVPKPTACMEVENRSMEEGGGPSRQQPFAVIDQVFRASPAEEAGLKNGDLLVSLGTVNAQNHNNFAAIVALVQENEGRVLRVEVQRPQEASAGGPSSAPRKETVVMSLIPHAWSGRGLLGCHL 256
            R  L +++KE+D +E +   I++FL +P       PG+ G  LVDAEGFPRADID+++VR  RNRLAC+ TDH  +MK+IEE +  LH + KT           +  +  G +I + S    E+ ++ET+ + ++  + +    E       + PFA I  V   SPA+++GLK GD +   G +N  NH N  AIV LV+ +    ++V+V R  +   GG       E   +S +P  W GRG LGC L
Sbjct:   14 REALMKIMKEKDEIEKQIFDIREFLETP-----PMPGVKGT-LVDAEGFPRADIDLFEVRKFRNRLACLQTDHCTVMKQIEEGLLNLHDDYKT-----------NNINEPGEEIKSSS---NEDVKMETMSQTSSASQSQMMQNE------VKIPFAWISDVIEGSPAQDSGLKMGDAIYRFGNINHDNHENLNAIVELVKSSLNNPIQVKVLR--KNLFGG------SEDKEISFVPREWGGRGYLGCAL 230          
BLAST of EWM21758.1 vs. NCBI_GenBank
Match: gi|673053505|ref|XP_008880713.1| (hypothetical protein H310_14601 [Aphanomyces invadans] >gi|574463578|gb|ETV90643.1| hypothetical protein H310_14601 [Aphanomyces invadans])

HSP 1 Score: 132.494 bits (332), Expect = 2.878e-34
Identity = 89/249 (35.74%), Postives = 127/249 (51.00%), Query Frame = 0
Query:    9 LEELIKERDNLETEAAVIKDFLTSPGPGGAAPPGLGGVPLVDAEGFPRADIDVWDVRVKRNRLACIDTDHAELMKRIEELVQRLHQEAKTSAGVRGMSNNWSTSSSTGRDIGALSYTRTEESQVETVPKPTACMEVENRSMEEGGGPSRQQPFAVIDQVFRASPAEEAGLKNGDLLVSLGTVNAQNHNNFAAIVALVQENEGRVLRVEVQRPQEASAGGPSSAPRKETVVMSLIPHAWSGRGLLGCHLT 257
             +EL KER  ++ E  +I + LTS    G  P GL G PLVD EGFPR+DIDV+ VR KR+R AC+  D    MK IE+++  ++ E K               +ST +  G LS++     +     K TA        +    G     PFA ++ +   SP+ EAGL+ GDL++  GT  A+NH   AAI  +V  N    + V VQR            P  +  ++SL+PH+W+G G+LGCH+ 
Sbjct:    4 FQELDKERAAIDAEIQLIAEELTS----GPNPIGLKG-PLVDEEGFPRSDIDVYTVRHKRHRFACLQNDLKWKMKEIEDVMTSIYAEQKAQ-----QPPTLKQPNSTAK--GTLSHSTVHAIEAN---KGTAL----PVKLLGNSGVDSAIPFARVESIQDGSPSSEAGLQVGDLILQFGTAKAENHRELAAIRDIVGRNINTTIEVIVQR-----------QPTADLYLLSLVPHSWNGPGVLGCHIV 222          
BLAST of EWM21758.1 vs. NCBI_GenBank
Match: gi|570338021|gb|ETO85969.1| (hypothetical protein F444_00427 [Phytophthora parasitica P1976])

HSP 1 Score: 131.724 bits (330), Expect = 5.322e-34
Identity = 96/253 (37.94%), Postives = 132/253 (52.17%), Query Frame = 0
Query:    4 DARSELEELIKERDNLETEAAVIKDFLTSPGPGGAAPPGLGGVPLVDAEGFPRADIDVWDVRVKRNRLACIDTDHAELMKRIEELVQRLHQEAKTSAGVRGMSNNWSTSSSTGRDIGALSYTRTEESQVETVPKPTACMEVENRSMEEGGGPSRQQPFAVIDQVFRASPAEEAGLKNGDLLVSLGTVNAQNHNNFAAIVALVQENEGRVLRVEVQRPQEASAGGPSSAPRKETVVMSLIPHAWSGRGLLGCHL 256
            D  SE E  +K ++ +E E   +   LTS        PGL G PLVDAEGFPRADIDV+ VR  R+ LA   TDH   MK+IEEL+ R+  EA++S   R + N+ +T+     D  A    R  ES+ +   +  + +  E R +          PFAV++ V R SPAE AGL+  D ++  GT +A NH   AA+  +VQ N G  +RV V+R             + E + + L P  W G G+LGC L
Sbjct:    3 DVVSEYEAAVKTKEAIEAEIEAVVAELTS-----GNNPGLDG-PLVDAEGFPRADIDVYRVRQLRHTLALKQTDHQTTMKKIEELLPRVF-EARSSGKQREVKNSTTTTDPQVND--ATERMRKLESEWK---QKMSEVTPEERDL---------LPFAVVESVQRESPAELAGLQAQDHVLRFGTADASNHRELAAVRDIVQRNIGSGIRVVVRR-------------QTEILALELTPQTWRGPGVLGCLL 221          
BLAST of EWM21758.1 vs. NCBI_GenBank
Match: gi|568029468|gb|ETM03394.1| (hypothetical protein L917_00376 [Phytophthora parasitica])

HSP 1 Score: 131.724 bits (330), Expect = 6.248e-34
Identity = 95/253 (37.55%), Postives = 133/253 (52.57%), Query Frame = 0
Query:    4 DARSELEELIKERDNLETEAAVIKDFLTSPGPGGAAPPGLGGVPLVDAEGFPRADIDVWDVRVKRNRLACIDTDHAELMKRIEELVQRLHQEAKTSAGVRGMSNNWSTSSSTGRDIGALSYTRTEESQVETVPKPTACMEVENRSMEEGGGPSRQQPFAVIDQVFRASPAEEAGLKNGDLLVSLGTVNAQNHNNFAAIVALVQENEGRVLRVEVQRPQEASAGGPSSAPRKETVVMSLIPHAWSGRGLLGCHL 256
            D  SE E  +K ++ +E E   +   LTS        PGL G PLVDAEGFPRADIDV+ VR  R+ LA   TDH   MK+IEEL+ R+  EA++S   + + N+ +T+     D  A    R  ES+ +   +  + ++ E R +          PFAV++ V R SPAE AGL+  D ++  GT +A NH   AA+  +VQ N G  +RV V+R             + E + + L P  W G G+LGC L
Sbjct:    3 DVVSEYEAAVKTKEAIEAEIEAVVAELTS-----GNNPGLDG-PLVDAEGFPRADIDVYRVRQLRHTLALKQTDHQTTMKKIEELLPRVF-EARSSGKQQEVKNSTTTTDPQVND--ATERMRKLESEWK---QKMSEVKPEERDL---------LPFAVVESVQRESPAELAGLQAQDHVLRFGTADASNHRELAAVRDIVQRNIGSSIRVVVRR-------------QTEILALELTPQTWRGPGVLGCLL 221          
BLAST of EWM21758.1 vs. NCBI_GenBank
Match: gi|1025032051|ref|XP_016325202.1| (PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 isoform X2 [Sinocyclocheilus anshuiensis])

HSP 1 Score: 130.183 bits (326), Expect = 1.462e-33
Identity = 84/245 (34.29%), Postives = 123/245 (50.20%), Query Frame = 0
Query:   12 LIKERDNLETEAAVIKDFLTSPGPGGAAPPGLGGVPLVDAEGFPRADIDVWDVRVKRNRLACIDTDHAELMKRIEELVQRLHQEAKTSAGVRGMSNNWSTSSSTGRDIGALSYTRTEESQVETVPKPTACMEVENRSMEEGGGPSRQQPFAVIDQVFRASPAEEAGLKNGDLLVSLGTVNAQNHNNFAAIVALVQENEGRVLRVEVQRPQEASAGGPSSAPRKETVVMSLIPHAWSGRGLLGCHL 256
            LIK + ++E +     D L + G G  AP       LVD EGFPRAD+D++ VR  R+ ++C+  DH  +M  IEE + +LH  A               S    +D+     T+TE      V +PTA +            P+   PFA++D V + SPA +AGL+ GD ++  G+VN QN  N   + ++VQ +EG+ LRV + R               + V ++L P  WSGRGLLGC+L
Sbjct:   22 LIKRKGDIEEQIKAYHDMLQTAGVGMDAP-------LVDVEGFPRADVDLYKVRTARHNISCLQNDHKAIMVEIEEALHKLHATA---------------SVKPEKDV-----TKTE------VTEPTASL------------PA---PFALVDTVTQGSPAFQAGLRVGDEIIEFGSVNTQNFRNLHDVASVVQHSEGKSLRVGLLRS-------------GQEVHLNLTPKQWSGRGLLGCNL 205          
BLAST of EWM21758.1 vs. NCBI_GenBank
Match: gi|566034322|gb|ETI57233.1| (hypothetical protein F443_00431 [Phytophthora parasitica P1569])

HSP 1 Score: 130.568 bits (327), Expect = 1.567e-33
Identity = 95/253 (37.55%), Postives = 133/253 (52.57%), Query Frame = 0
Query:    4 DARSELEELIKERDNLETEAAVIKDFLTSPGPGGAAPPGLGGVPLVDAEGFPRADIDVWDVRVKRNRLACIDTDHAELMKRIEELVQRLHQEAKTSAGVRGMSNNWSTSSSTGRDIGALSYTRTEESQVETVPKPTACMEVENRSMEEGGGPSRQQPFAVIDQVFRASPAEEAGLKNGDLLVSLGTVNAQNHNNFAAIVALVQENEGRVLRVEVQRPQEASAGGPSSAPRKETVVMSLIPHAWSGRGLLGCHL 256
            D  SE E  +K ++ +E E   +   LTS        PGL G PLVDAEGFPRADIDV+ VR  R+ LA   TDH   MK+IEEL+ R+  EA++S   + + N+ +T+     D  A    R  ES+ +   +  + ++ E R +          PFAV++ V R SPAE AGL+  D ++  GT +A NH   AA+  +VQ N G  +RV V+R             + E + + L P  W G G+LGC L
Sbjct:    3 DVVSEYEAAVKAKEAIEAEIEAVVAELTS-----GNNPGLDG-PLVDAEGFPRADIDVYRVRQLRHTLALKQTDHQTTMKKIEELLPRVF-EARSSGKQQEVKNSTTTTDPQVND--ATERMRKLESEWK---QKMSEVKPEERDL---------LPFAVVESVQRESPAELAGLQAQDHVLRFGTADASNHRELAAVRDIVQRNIGSGIRVVVRR-------------QTEILALELTPQTWRGPGVLGCLL 221          
BLAST of EWM21758.1 vs. NCBI_GenBank
Match: gi|970662300|gb|KUF99700.1| (hypothetical protein AM588_10010148 [Phytophthora nicotianae])

HSP 1 Score: 130.183 bits (326), Expect = 2.113e-33
Identity = 94/253 (37.15%), Postives = 133/253 (52.57%), Query Frame = 0
Query:    4 DARSELEELIKERDNLETEAAVIKDFLTSPGPGGAAPPGLGGVPLVDAEGFPRADIDVWDVRVKRNRLACIDTDHAELMKRIEELVQRLHQEAKTSAGVRGMSNNWSTSSSTGRDIGALSYTRTEESQVETVPKPTACMEVENRSMEEGGGPSRQQPFAVIDQVFRASPAEEAGLKNGDLLVSLGTVNAQNHNNFAAIVALVQENEGRVLRVEVQRPQEASAGGPSSAPRKETVVMSLIPHAWSGRGLLGCHL 256
            D  SE E  +K ++ +E E   +   LTS        PGL G PLVDAEGFPRADIDV+ VR  R+ LA   TDH   MK+IEEL+ R+  +A++S   + + N+ +T+     D  A    R  ES+ +   +  + ++ E R +          PFAV++ V R SPAE AGL+  D ++  GT +A NH   AA+  +VQ N G  +RV V+R             + E + + L P  W G G+LGC L
Sbjct:    3 DVVSEYEAAVKAKEAIEAEIEAVVAELTS-----GNNPGLDG-PLVDAEGFPRADIDVYRVRQLRHTLALKQTDHQTTMKKIEELLPRVF-DARSSGKQQEVKNSTTTTDPQVND--ATERMRKLESEWK---QKMSEVKPEERDL---------LPFAVVESVQRESPAELAGLQAQDHVLRFGTADASNHRELAAVRDIVQRNIGSSIRVVVRR-------------QTEILALELTPQTWRGPGVLGCLL 221          
BLAST of EWM21758.1 vs. NCBI_GenBank
Match: gi|570998842|gb|ETP54967.1| (hypothetical protein F442_00422 [Phytophthora parasitica P10297])

HSP 1 Score: 130.183 bits (326), Expect = 2.229e-33
Identity = 94/253 (37.15%), Postives = 133/253 (52.57%), Query Frame = 0
Query:    4 DARSELEELIKERDNLETEAAVIKDFLTSPGPGGAAPPGLGGVPLVDAEGFPRADIDVWDVRVKRNRLACIDTDHAELMKRIEELVQRLHQEAKTSAGVRGMSNNWSTSSSTGRDIGALSYTRTEESQVETVPKPTACMEVENRSMEEGGGPSRQQPFAVIDQVFRASPAEEAGLKNGDLLVSLGTVNAQNHNNFAAIVALVQENEGRVLRVEVQRPQEASAGGPSSAPRKETVVMSLIPHAWSGRGLLGCHL 256
            D  SE E  +K ++ +E E   +   LTS        PGL G PLVDAEGFPRADIDV+ VR  R+ LA   TDH   MK+IEEL+ R+  +A++S   + + N+ +T+     D  A    R  ES+ +   +  + ++ E R +          PFAV++ V R SPAE AGL+  D ++  GT +A NH   AA+  +VQ N G  +RV V+R             + E + + L P  W G G+LGC L
Sbjct:    3 DVVSEYEAAVKTKEAIEAEIEAVVAELTS-----GNNPGLDG-PLVDAEGFPRADIDVYRVRQLRHTLALKQTDHQTTMKKIEELLPRVF-DARSSGKQQEVKNSTTTTDPQVND--ATERMRKLESEWK---QKMSEVKPEERDL---------LPFAVVESVQRESPAELAGLQAQDHVLRFGTADATNHRELAAVRDIVQRNIGSSIRVVVRR-------------QTEILALELTPQTWRGPGVLGCLL 221          
The following BLAST results are available for this feature:
BLAST of EWM21758.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102090|gb|EWM21758.1|0.000e+0100.0026s proteasome non-atpase regulatory subunit 9 [Na... [more]
gi|553191114|ref|XP_005855324.1|4.590e-74100.0026s proteasome non-atpase regulatory subunit [Nann... [more]
gi|403361144|gb|EJY80269.1|1.142e-3636.65Proteasome (prosome, macropain) 26S subunit, non-A... [more]
gi|673053505|ref|XP_008880713.1|2.878e-3435.74hypothetical protein H310_14601 [Aphanomyces invad... [more]
gi|570338021|gb|ETO85969.1|5.322e-3437.94hypothetical protein F444_00427 [Phytophthora para... [more]
gi|568029468|gb|ETM03394.1|6.248e-3437.55hypothetical protein L917_00376 [Phytophthora para... [more]
gi|1025032051|ref|XP_016325202.1|1.462e-3334.29PREDICTED: 26S proteasome non-ATPase regulatory su... [more]
gi|566034322|gb|ETI57233.1|1.567e-3337.55hypothetical protein F443_00431 [Phytophthora para... [more]
gi|970662300|gb|KUF99700.1|2.113e-3337.15hypothetical protein AM588_10010148 [Phytophthora ... [more]
gi|570998842|gb|ETP54967.1|2.229e-3337.15hypothetical protein F442_00422 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8946rna8946Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications