EWM21754.1, cds8915 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21754.1 vs. NCBI_GenBank
Match: gi|585102086|gb|EWM21754.1| (peroxisomal biogenesis factor 1, partial [Nannochloropsis gaditana]) HSP 1 Score: 582.408 bits (1500), Expect = 0.000e+0 Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0
Query: 1 MRLRVKPGLRHCFVALPSSFTHRLREDAAVSSGTVVLELQWTGLDGENCRAFVCWNGAVSGGKIRGSDAGNAEVLEMDEAFARCLGLGPMLAVYRNVQLRVQRALVVEFPRRVELEPCTPDDWELVELHAGYLEAEILRQIAVVYAGQTLPIWIHAQKLVQLRVVNVSSRAPQRLSTSTEVVVAPCLRPPPVAHAHPFPEDDAPPVFLASPPLRVQPQPARRQHWPFQAQTVIALHPSTYRAALRNPAPATDQALARISQRVRGRGNREGQREGCGSLVTGFEEVGPR 288
MRLRVKPGLRHCFVALPSSFTHRLREDAAVSSGTVVLELQWTGLDGENCRAFVCWNGAVSGGKIRGSDAGNAEVLEMDEAFARCLGLGPMLAVYRNVQLRVQRALVVEFPRRVELEPCTPDDWELVELHAGYLEAEILRQIAVVYAGQTLPIWIHAQKLVQLRVVNVSSRAPQRLSTSTEVVVAPCLRPPPVAHAHPFPEDDAPPVFLASPPLRVQPQPARRQHWPFQAQTVIALHPSTYRAALRNPAPATDQALARISQRVRGRGNREGQREGCGSLVTGFEEVGPR
Sbjct: 1 MRLRVKPGLRHCFVALPSSFTHRLREDAAVSSGTVVLELQWTGLDGENCRAFVCWNGAVSGGKIRGSDAGNAEVLEMDEAFARCLGLGPMLAVYRNVQLRVQRALVVEFPRRVELEPCTPDDWELVELHAGYLEAEILRQIAVVYAGQTLPIWIHAQKLVQLRVVNVSSRAPQRLSTSTEVVVAPCLRPPPVAHAHPFPEDDAPPVFLASPPLRVQPQPARRQHWPFQAQTVIALHPSTYRAALRNPAPATDQALARISQRVRGRGNREGQREGCGSLVTGFEEVGPR 288
BLAST of EWM21754.1 vs. NCBI_GenBank
Match: gi|1026967237|ref|XP_016610534.1| (hypothetical protein SPPG_02954 [Spizellomyces punctatus DAOM BR117] >gi|907096966|gb|KND02495.1| hypothetical protein SPPG_02954 [Spizellomyces punctatus DAOM BR117]) HSP 1 Score: 123.635 bits (309), Expect = 6.354e-28 Identity = 81/223 (36.32%), Postives = 118/223 (52.91%), Query Frame = 0
Query: 8 GLRHCFVALPSSFTHRLRED-AAVSSGTVVLELQWTGLD-GENCRAFVCWNGAVSGGKIRGSDAG------NAEVLEMDEAFARCLGLGPMLAVYRNVQLRVQRALVVEFPR------RVELEPCTPDDWELVELHAGYLEAEILRQIAVVYAGQTLPIWIHAQKLVQLRVVNVSSRAP-QRLSTSTEVVVAPCLRPPPVAHAHPFPEDDAPPVFLASPPLRV 215
L CFV LP S+++ L + A+ +G VVLEL W G +AFV W G G R S G ++E LE+D + R LGL R + + VEF + V +EP T DDWE++ELHAGYLE + L Q+ +V+ Q + IW+H+Q L++L+VV + A +L T EV+VAP R P +++ P D P+ A+P ++
Sbjct: 11 NLHSCFVHLPPSWSNALWDRLKALKAGEVVLELLWADKSTGSGGKAFVGWAG---GATTRTSQNGPLSSSPDSEYLELDAQYGRALGL------------REGQVVNVEFCKDVVSGTSVHVEPLTADDWEILELHAGYLEEQFLNQVRIVWKDQIITIWVHSQTLIKLKVVETNPNARCIKLDTDAEVIVAPKQRWKPSSNSKP----DNAPLESAAPKIKT 214
BLAST of EWM21754.1 vs. NCBI_GenBank
Match: gi|1183334087|gb|ORX63604.1| (AAA-domain-containing protein [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 122.479 bits (306), Expect = 1.498e-27 Identity = 76/187 (40.64%), Postives = 105/187 (56.15%), Query Frame = 0
Query: 9 LRHCFVALPSSFTHRLREDAAVSSGTVVLELQWTGLDGENCR-AFVCWNGAVSGGKIRG---SDAGNAEVLEMDEAFARCLGLGPMLAVYRNVQLRVQRALVVEFPR--RVELEPCTPDDWELVELHAGYLEAEILRQIAVVYAGQTLPIWIHAQKLVQLRVVNVSSRAP-QRLSTSTEVVVAPCLR 188
LR+CFV LP S+TH + E S+ +VVLEL W + R +V W G S + G + NAE+LEMD F +GL ++ Q V+ A + P VE+EP + DDWE+VELHAG +E + L QI +V+ QT+ WIH Q +VQLRVVN +A +L + EV + P +R
Sbjct: 11 LRNCFVNLPPSWTHIILEQG-YSATSVVLELSWHDASLNSVRKTYVGWAGGSSNARQAGHPRTHKKNAEILEMDTQFGLAMGL-------KDGQ-EVEIAFKHDVPNGNSVEVEPFSADDWEIVELHAGLIEQQFLNQIQIVHRDQTINFWIHGQTIVQLRVVNTDPKASCIKLGANAEVYIKPKVR 188
BLAST of EWM21754.1 vs. NCBI_GenBank
Match: gi|1183379753|gb|ORY05217.1| (AAA-domain-containing protein [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 120.939 bits (302), Expect = 5.406e-27 Identity = 76/187 (40.64%), Postives = 105/187 (56.15%), Query Frame = 0
Query: 9 LRHCFVALPSSFTHRLREDAAVSSGTVVLELQWTGLDGENCR-AFVCWNGAVSGGKIRG---SDAGNAEVLEMDEAFARCLGLGPMLAVYRNVQLRVQRALVVEFPR--RVELEPCTPDDWELVELHAGYLEAEILRQIAVVYAGQTLPIWIHAQKLVQLRVVNVSSRAP-QRLSTSTEVVVAPCLR 188
LR+CFV LP S+TH + E S+ +VVLEL W + R +V W G S + G + NAE+LEMD F +GL ++ Q V+ A + P VE+EP + DDWE+VELHAG +E + L QI +V+ QT+ WIH Q +VQLRVVN +A +L + EV + P +R
Sbjct: 11 LRNCFVNLPPSWTHIILEQG-YSATSVVLELSWHDASLNSVRKTYVGWAGGSSNARQAGHPRTHKKNAEILEMDTQFGLAMGL-------KDGQ-EVEIAFKHDVPNGNSVEVEPFSADDWEIVELHAGLIEQQFLNQIQIVHRDQTINFWIHGQTIVQLRVVNTDPKASCIKLGANAEVYIKPKVR 188
BLAST of EWM21754.1 vs. NCBI_GenBank
Match: gi|1173928688|gb|OQR82220.1| (peroxisome biogenesis factor [Thraustotheca clavata]) HSP 1 Score: 117.857 bits (294), Expect = 4.780e-26 Identity = 85/209 (40.67%), Postives = 110/209 (52.63%), Query Frame = 0
Query: 12 CFVALPSSFTHRLREDAAVSSGTVVLELQWTGLDGENCRAFVCWNGAVSGGKIRGSDAGNAEVLEMDEAFARCLGLGPMLAVYRNVQLRVQRALVVEFPR--RVELEPCTPDDWELVELHAGYLEAEILRQIAVVYAGQTLPIWIHAQKLVQLRVVNVSSRAP-QRLSTSTEVVVAPCLRPPPVAHAHPFPEDDAPPVFLASPPLRVQP 217
CFVALP F A + G VLEL W G AFV W G ++ ++ LEM F RCLGL + A+ R LRV ++ P V +EPCTPDDWE+++LHAGYLE EILRQI VV Q +P+ I LV L +V + P RLS++ E+ +AP R A+ D++ FLAS PL +QP
Sbjct: 18 CFVALPEPFVRMYLGHANPNLGATVLELNWHSPSGTET-AFVGWVGELAA----------SDTLEMSLEFGRCLGL--VEAMERVPGLRVGVSISNAVPAVPMVHMEPCTPDDWEIIQLHAGYLENEILRQICVVKHDQVIPVRIQQHILVHL-IVTLPPDVPFARLSSNCEIAIAPKSRTTDSAN------DESS--FLASHPLMLQP 204
BLAST of EWM21754.1 vs. NCBI_GenBank
Match: gi|66804599|ref|XP_636032.1| (peroxisomal biogenesis factor 1 [Dictyostelium discoideum AX4] >gi|74996619|sp|Q54GX5.1|PEX1_DICDI RecName: Full=Peroxisome biogenesis factor 1; AltName: Full=Peroxin-1 >gi|60464386|gb|EAL62534.1| peroxisomal biogenesis factor 1 [Dictyostelium discoideum AX4]) HSP 1 Score: 115.931 bits (289), Expect = 2.736e-25 Identity = 64/198 (32.32%), Postives = 109/198 (55.05%), Query Frame = 0
Query: 1 MRLRVKPGLRH---CFVALPSSFTHRL---REDAAVSSGTVVLELQW-TGLDGENCRAFVCWNGAVSGGKIRGSDAGNAEVLEMDEAFARCLGLGPMLAVYRNVQLRVQRALVVEFPRRVELEPCTPDDWELVELHAGYLEAEILRQIAVVYAGQTLPIWIHAQKLVQLRVVNVSSRAPQRLSTSTEVVVAPCLRPPP 191
M L V+ L+H CFV+LP H L E + S GT+ LE+ W ++ + + +V W G +D + +EM + A+CLG + +L+++ +E V++EP T DDWE++E+H YLE ++L Q+ ++Y+GQ +PIWIH + +++L+V +LS+++E++VAP R P
Sbjct: 1 MELHVQ--LKHSTDCFVSLPPKIVHSLLLLSEKQSKSLGTLGLEITWYDKINKKENKGYVGWAGG-------STDPRFTDSIEMSQEMAQCLG-----GIKNEQKLKLKALNNIELAHSVQVEPLTSDDWEIMEVHQQYLEEQLLNQVNILYSGQIVPIWIHHKTIIKLKVTETLPTPVVKLSSNSEIIVAPKPRNLP 184
BLAST of EWM21754.1 vs. NCBI_GenBank
Match: gi|1214696804|gb|OWZ10233.1| (Peroxisome biogenesis factor [Phytophthora megakarya]) HSP 1 Score: 115.546 bits (288), Expect = 3.522e-25 Identity = 76/212 (35.85%), Postives = 110/212 (51.89%), Query Frame = 0
Query: 12 CFVALPSSFTHRLREDAAVSSGTVVLELQWTGLDGENCRAFVCW-NGAVSGGKIRGSDAGNAEVLEMDEAFARCLGLGPMLAVYR----NVQLRVQRALVVEFPRRVELEPCTPDDWELVELHAGYLEAEILRQIAVVYAGQTLPIWIHAQKLVQLRVVNVSSRAPQRLSTSTEVVVAPCLRPPPVAHAHPFPEDDAPPVFLASPPLRVQPQ 218
CFV LP +F + G+ +LEL W ++G RA V W G V G +R +V+E+ FARC+G+ + + V + VQ + R+V +EPCTPDDWEL++LHAG +E E+LRQ+ VV Q PIWI+ L+++RV + R++ +EV+VAP R H D + SPPL VQ +
Sbjct: 18 CFVNLPPAFVQTFLGGPELVPGSTILELSWETVEGYVQRACVGWIGGIVKDGALR------RDVIEVPAEFARCVGIVRCVLYHLEKAPQVFIGVQVVEALPIARQVNVEPCTPDDWELIQLHAGTIETELLRQMCVVNDKQVSPIWINQSTLIRIRVSLPTGMEHARVTPISEVIVAPNERQ---TQEHGLCPD---LYYEQSPPLYVQEE 217
BLAST of EWM21754.1 vs. NCBI_GenBank
Match: gi|301113936|ref|XP_002998738.1| (peroxisome biogenesis factor, putative [Phytophthora infestans T30-4] >gi|262112039|gb|EEY70091.1| peroxisome biogenesis factor, putative [Phytophthora infestans T30-4]) HSP 1 Score: 115.161 bits (287), Expect = 3.982e-25 Identity = 73/207 (35.27%), Postives = 108/207 (52.17%), Query Frame = 0
Query: 12 CFVALPSSFTHR-LREDAAVSSGTVVLELQWTGLDGENCRAFVCWNGAVS-GGKIRGSDAGNAEVLEMDEAFARCLGLGPMLAVYRNVQLRVQRALVVEFPRRVELEPCTPDDWELVELHAGYLEAEILRQIAVVYAGQTLPIWIHAQKLVQLRVVNVSSRAPQRLSTSTEVVVAPCLRPPPVAHAHPFPEDDAPPVFLASPPLRVQ 216
CFV LP +F L +++G+ +LEL W LDG R V W G ++ G +R ++++E+ ARC+G+ L + V + R+V +EPCT DDWEL++LHAG +E E+LRQ+ VV Q PIWI+ L+++R + RL+ ++EV+VAP R A H D + SPP VQ
Sbjct: 18 CFVNLPPAFVQAFLGGPELMNAGSTILELSWETLDGYVQRVCVGWIGGIAKDGALR------SDIVEIPAELARCVGIQDHLEKMPQAFIGVHVVEALSIARQVNVEPCTADDWELIQLHAGAIETELLRQMCVVNDKQVSPIWINQNTLIRIRASLPAGMEHARLTPASEVIVAPKERQVETAE-HALSPD---LYYEQSPPFIVQ 214
BLAST of EWM21754.1 vs. NCBI_GenBank
Match: gi|669147812|ref|XP_008609468.1| (hypothetical protein SDRG_05527 [Saprolegnia diclina VS20] >gi|530739064|gb|EQC37306.1| hypothetical protein SDRG_05527 [Saprolegnia diclina VS20]) HSP 1 Score: 114.775 bits (286), Expect = 5.671e-25 Identity = 81/209 (38.76%), Postives = 107/209 (51.20%), Query Frame = 0
Query: 12 CFVALPSSFTHRLREDAAVSSGTVVLELQWTGLDG-ENCRAFVCWNGAVSGGKIRGSDAGNAEVLEMDEAFARCLGLGPMLAVYRNVQLRVQRALVVEFPR--RVELEPCTPDDWELVELHAGYLEAEILRQIAVVYAGQTLPIWIHAQKLVQLRVVNVSSRAPQRLSTSTEVVVAPCLRPPPVAHAHPFPEDDAPPVFLASPPLRVQP 217
CF+ALP +F A ++G VL+L W DG E A V W G S + AE LE+ F RCLGL A+ R+ LR+ A+ P V +EPCT DDWE+++LHAG+LE+E+LRQI VV GQ +P+ I +V L V RLS + E+ +AP R +D P + ASPPL QP
Sbjct: 18 CFIALPEAFVRSHLHHANPNAGATVLQLSWH--DGPEPMMAHVGWVGEFS----QRYAMHLAEALEVPMEFGRCLGLAD--AMERSPGLRISVAVAAFTPTVPMVHMEPCTADDWEIIQLHAGHLESEVLRQICVVQNGQEIPVRIQQHMVVHLLVTLPPDVPCARLSANCEIAIAPKTR--------TVLDDPTPAYYDASPPLARQP 210
BLAST of EWM21754.1 vs. NCBI_GenBank
Match: gi|570995714|gb|ETP52510.1| (hypothetical protein F442_02492 [Phytophthora parasitica P10297]) HSP 1 Score: 114.005 bits (284), Expect = 1.245e-24 Identity = 74/208 (35.58%), Postives = 104/208 (50.00%), Query Frame = 0
Query: 12 CFVALPSSFTHRLREDAAVSS--GTVVLELQWTGLDGENCRAFVCW-NGAVSGGKIRGSDAGNAEVLEMDEAFARCLGLGPMLAVYRNVQLRVQRALVVEFPRRVELEPCTPDDWELVELHAGYLEAEILRQIAVVYAGQTLPIWIHAQKLVQLRVVNVSSRAPQRLSTSTEVVVAPCLRPPPVAHAHPFPEDDAPPVFLASPPLRVQ 216
CFV LP +F + S G +LEL W LDG R V W G V G +R ++++EM ARC+G+ L + V + R+V +EPCTPDDWEL++LHAG +E E+LRQ+ VV Q PIWI+ L+++R RL+ ++EV+VAP R + P+ + SP L VQ
Sbjct: 18 CFVNLPPAFVQAFVGGPELMSVAGATILELSWETLDGYVQRVCVGWIGGIVKDGALR------SDIIEMPIELARCVGIQDHLEKMPQAFIGVHVVEALPIARQVSVEPCTPDDWELIQLHAGAVETELLRQMCVVNDKQVSPIWINQNTLIRIRASLPVGMEHARLTPASEVIVAPKERQVQTTESGMSPD----LYYEQSPSLLVQ 215 The following BLAST results are available for this feature:
BLAST of EWM21754.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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