EWM21754.1, cds8915 (CDS) Nannochloropsis gaditana

Overview
NameEWM21754.1
Unique Namecds8915
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:539198..540061 -

Link to JBrowse

Properties
Property NameValue
Start range539198
Start range.
Protein idEWM21754.1
Productperoxisomal biogenesis factor 1
Partialtrue
Orig transcript idgnl|cribi|Naga_100213g1.9988.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:539198..540061 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0042623ATPase activity, coupled
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0016043cellular component organization
GO:0006625protein targeting to peroxisome
GO:0007031peroxisome organization
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005778peroxisomal membrane
GO:0005777peroxisome
Vocabulary: INTERPRO
TermDefinition
IPR009010Asp_de-COase-like_dom
IPR025653Pex1
IPR029067CDC48_domain_2-like
IPR015342PEX-1N
Homology
BLAST of EWM21754.1 vs. NCBI_GenBank
Match: gi|585102086|gb|EWM21754.1| (peroxisomal biogenesis factor 1, partial [Nannochloropsis gaditana])

HSP 1 Score: 582.408 bits (1500), Expect = 0.000e+0
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0
Query:    1 MRLRVKPGLRHCFVALPSSFTHRLREDAAVSSGTVVLELQWTGLDGENCRAFVCWNGAVSGGKIRGSDAGNAEVLEMDEAFARCLGLGPMLAVYRNVQLRVQRALVVEFPRRVELEPCTPDDWELVELHAGYLEAEILRQIAVVYAGQTLPIWIHAQKLVQLRVVNVSSRAPQRLSTSTEVVVAPCLRPPPVAHAHPFPEDDAPPVFLASPPLRVQPQPARRQHWPFQAQTVIALHPSTYRAALRNPAPATDQALARISQRVRGRGNREGQREGCGSLVTGFEEVGPR 288
            MRLRVKPGLRHCFVALPSSFTHRLREDAAVSSGTVVLELQWTGLDGENCRAFVCWNGAVSGGKIRGSDAGNAEVLEMDEAFARCLGLGPMLAVYRNVQLRVQRALVVEFPRRVELEPCTPDDWELVELHAGYLEAEILRQIAVVYAGQTLPIWIHAQKLVQLRVVNVSSRAPQRLSTSTEVVVAPCLRPPPVAHAHPFPEDDAPPVFLASPPLRVQPQPARRQHWPFQAQTVIALHPSTYRAALRNPAPATDQALARISQRVRGRGNREGQREGCGSLVTGFEEVGPR
Sbjct:    1 MRLRVKPGLRHCFVALPSSFTHRLREDAAVSSGTVVLELQWTGLDGENCRAFVCWNGAVSGGKIRGSDAGNAEVLEMDEAFARCLGLGPMLAVYRNVQLRVQRALVVEFPRRVELEPCTPDDWELVELHAGYLEAEILRQIAVVYAGQTLPIWIHAQKLVQLRVVNVSSRAPQRLSTSTEVVVAPCLRPPPVAHAHPFPEDDAPPVFLASPPLRVQPQPARRQHWPFQAQTVIALHPSTYRAALRNPAPATDQALARISQRVRGRGNREGQREGCGSLVTGFEEVGPR 288          
BLAST of EWM21754.1 vs. NCBI_GenBank
Match: gi|1026967237|ref|XP_016610534.1| (hypothetical protein SPPG_02954 [Spizellomyces punctatus DAOM BR117] >gi|907096966|gb|KND02495.1| hypothetical protein SPPG_02954 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 123.635 bits (309), Expect = 6.354e-28
Identity = 81/223 (36.32%), Postives = 118/223 (52.91%), Query Frame = 0
Query:    8 GLRHCFVALPSSFTHRLRED-AAVSSGTVVLELQWTGLD-GENCRAFVCWNGAVSGGKIRGSDAG------NAEVLEMDEAFARCLGLGPMLAVYRNVQLRVQRALVVEFPR------RVELEPCTPDDWELVELHAGYLEAEILRQIAVVYAGQTLPIWIHAQKLVQLRVVNVSSRAP-QRLSTSTEVVVAPCLRPPPVAHAHPFPEDDAPPVFLASPPLRV 215
             L  CFV LP S+++ L +   A+ +G VVLEL W     G   +AFV W G   G   R S  G      ++E LE+D  + R LGL            R  + + VEF +       V +EP T DDWE++ELHAGYLE + L Q+ +V+  Q + IW+H+Q L++L+VV  +  A   +L T  EV+VAP  R  P +++ P    D  P+  A+P ++ 
Sbjct:   11 NLHSCFVHLPPSWSNALWDRLKALKAGEVVLELLWADKSTGSGGKAFVGWAG---GATTRTSQNGPLSSSPDSEYLELDAQYGRALGL------------REGQVVNVEFCKDVVSGTSVHVEPLTADDWEILELHAGYLEEQFLNQVRIVWKDQIITIWVHSQTLIKLKVVETNPNARCIKLDTDAEVIVAPKQRWKPSSNSKP----DNAPLESAAPKIKT 214          
BLAST of EWM21754.1 vs. NCBI_GenBank
Match: gi|1183334087|gb|ORX63604.1| (AAA-domain-containing protein [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 122.479 bits (306), Expect = 1.498e-27
Identity = 76/187 (40.64%), Postives = 105/187 (56.15%), Query Frame = 0
Query:    9 LRHCFVALPSSFTHRLREDAAVSSGTVVLELQWTGLDGENCR-AFVCWNGAVSGGKIRG---SDAGNAEVLEMDEAFARCLGLGPMLAVYRNVQLRVQRALVVEFPR--RVELEPCTPDDWELVELHAGYLEAEILRQIAVVYAGQTLPIWIHAQKLVQLRVVNVSSRAP-QRLSTSTEVVVAPCLR 188
            LR+CFV LP S+TH + E    S+ +VVLEL W      + R  +V W G  S  +  G   +   NAE+LEMD  F   +GL       ++ Q  V+ A   + P    VE+EP + DDWE+VELHAG +E + L QI +V+  QT+  WIH Q +VQLRVVN   +A   +L  + EV + P +R
Sbjct:   11 LRNCFVNLPPSWTHIILEQG-YSATSVVLELSWHDASLNSVRKTYVGWAGGSSNARQAGHPRTHKKNAEILEMDTQFGLAMGL-------KDGQ-EVEIAFKHDVPNGNSVEVEPFSADDWEIVELHAGLIEQQFLNQIQIVHRDQTINFWIHGQTIVQLRVVNTDPKASCIKLGANAEVYIKPKVR 188          
BLAST of EWM21754.1 vs. NCBI_GenBank
Match: gi|1183379753|gb|ORY05217.1| (AAA-domain-containing protein [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 120.939 bits (302), Expect = 5.406e-27
Identity = 76/187 (40.64%), Postives = 105/187 (56.15%), Query Frame = 0
Query:    9 LRHCFVALPSSFTHRLREDAAVSSGTVVLELQWTGLDGENCR-AFVCWNGAVSGGKIRG---SDAGNAEVLEMDEAFARCLGLGPMLAVYRNVQLRVQRALVVEFPR--RVELEPCTPDDWELVELHAGYLEAEILRQIAVVYAGQTLPIWIHAQKLVQLRVVNVSSRAP-QRLSTSTEVVVAPCLR 188
            LR+CFV LP S+TH + E    S+ +VVLEL W      + R  +V W G  S  +  G   +   NAE+LEMD  F   +GL       ++ Q  V+ A   + P    VE+EP + DDWE+VELHAG +E + L QI +V+  QT+  WIH Q +VQLRVVN   +A   +L  + EV + P +R
Sbjct:   11 LRNCFVNLPPSWTHIILEQG-YSATSVVLELSWHDASLNSVRKTYVGWAGGSSNARQAGHPRTHKKNAEILEMDTQFGLAMGL-------KDGQ-EVEIAFKHDVPNGNSVEVEPFSADDWEIVELHAGLIEQQFLNQIQIVHRDQTINFWIHGQTIVQLRVVNTDPKASCIKLGANAEVYIKPKVR 188          
BLAST of EWM21754.1 vs. NCBI_GenBank
Match: gi|1173928688|gb|OQR82220.1| (peroxisome biogenesis factor [Thraustotheca clavata])

HSP 1 Score: 117.857 bits (294), Expect = 4.780e-26
Identity = 85/209 (40.67%), Postives = 110/209 (52.63%), Query Frame = 0
Query:   12 CFVALPSSFTHRLREDAAVSSGTVVLELQWTGLDGENCRAFVCWNGAVSGGKIRGSDAGNAEVLEMDEAFARCLGLGPMLAVYRNVQLRVQRALVVEFPR--RVELEPCTPDDWELVELHAGYLEAEILRQIAVVYAGQTLPIWIHAQKLVQLRVVNVSSRAP-QRLSTSTEVVVAPCLRPPPVAHAHPFPEDDAPPVFLASPPLRVQP 217
            CFVALP  F       A  + G  VLEL W    G    AFV W G ++           ++ LEM   F RCLGL  + A+ R   LRV  ++    P    V +EPCTPDDWE+++LHAGYLE EILRQI VV   Q +P+ I    LV L +V +    P  RLS++ E+ +AP  R    A+      D++   FLAS PL +QP
Sbjct:   18 CFVALPEPFVRMYLGHANPNLGATVLELNWHSPSGTET-AFVGWVGELAA----------SDTLEMSLEFGRCLGL--VEAMERVPGLRVGVSISNAVPAVPMVHMEPCTPDDWEIIQLHAGYLENEILRQICVVKHDQVIPVRIQQHILVHL-IVTLPPDVPFARLSSNCEIAIAPKSRTTDSAN------DESS--FLASHPLMLQP 204          
BLAST of EWM21754.1 vs. NCBI_GenBank
Match: gi|66804599|ref|XP_636032.1| (peroxisomal biogenesis factor 1 [Dictyostelium discoideum AX4] >gi|74996619|sp|Q54GX5.1|PEX1_DICDI RecName: Full=Peroxisome biogenesis factor 1; AltName: Full=Peroxin-1 >gi|60464386|gb|EAL62534.1| peroxisomal biogenesis factor 1 [Dictyostelium discoideum AX4])

HSP 1 Score: 115.931 bits (289), Expect = 2.736e-25
Identity = 64/198 (32.32%), Postives = 109/198 (55.05%), Query Frame = 0
Query:    1 MRLRVKPGLRH---CFVALPSSFTHRL---REDAAVSSGTVVLELQW-TGLDGENCRAFVCWNGAVSGGKIRGSDAGNAEVLEMDEAFARCLGLGPMLAVYRNVQLRVQRALVVEFPRRVELEPCTPDDWELVELHAGYLEAEILRQIAVVYAGQTLPIWIHAQKLVQLRVVNVSSRAPQRLSTSTEVVVAPCLRPPP 191
            M L V+  L+H   CFV+LP    H L    E  + S GT+ LE+ W   ++ +  + +V W G         +D    + +EM +  A+CLG      +    +L+++    +E    V++EP T DDWE++E+H  YLE ++L Q+ ++Y+GQ +PIWIH + +++L+V         +LS+++E++VAP  R  P
Sbjct:    1 MELHVQ--LKHSTDCFVSLPPKIVHSLLLLSEKQSKSLGTLGLEITWYDKINKKENKGYVGWAGG-------STDPRFTDSIEMSQEMAQCLG-----GIKNEQKLKLKALNNIELAHSVQVEPLTSDDWEIMEVHQQYLEEQLLNQVNILYSGQIVPIWIHHKTIIKLKVTETLPTPVVKLSSNSEIIVAPKPRNLP 184          
BLAST of EWM21754.1 vs. NCBI_GenBank
Match: gi|1214696804|gb|OWZ10233.1| (Peroxisome biogenesis factor [Phytophthora megakarya])

HSP 1 Score: 115.546 bits (288), Expect = 3.522e-25
Identity = 76/212 (35.85%), Postives = 110/212 (51.89%), Query Frame = 0
Query:   12 CFVALPSSFTHRLREDAAVSSGTVVLELQWTGLDGENCRAFVCW-NGAVSGGKIRGSDAGNAEVLEMDEAFARCLGLGPMLAVYR----NVQLRVQRALVVEFPRRVELEPCTPDDWELVELHAGYLEAEILRQIAVVYAGQTLPIWIHAQKLVQLRVVNVSSRAPQRLSTSTEVVVAPCLRPPPVAHAHPFPEDDAPPVFLASPPLRVQPQ 218
            CFV LP +F         +  G+ +LEL W  ++G   RA V W  G V  G +R       +V+E+   FARC+G+   +  +      V + VQ    +   R+V +EPCTPDDWEL++LHAG +E E+LRQ+ VV   Q  PIWI+   L+++RV   +     R++  +EV+VAP  R       H    D     +  SPPL VQ +
Sbjct:   18 CFVNLPPAFVQTFLGGPELVPGSTILELSWETVEGYVQRACVGWIGGIVKDGALR------RDVIEVPAEFARCVGIVRCVLYHLEKAPQVFIGVQVVEALPIARQVNVEPCTPDDWELIQLHAGTIETELLRQMCVVNDKQVSPIWINQSTLIRIRVSLPTGMEHARVTPISEVIVAPNERQ---TQEHGLCPD---LYYEQSPPLYVQEE 217          
BLAST of EWM21754.1 vs. NCBI_GenBank
Match: gi|301113936|ref|XP_002998738.1| (peroxisome biogenesis factor, putative [Phytophthora infestans T30-4] >gi|262112039|gb|EEY70091.1| peroxisome biogenesis factor, putative [Phytophthora infestans T30-4])

HSP 1 Score: 115.161 bits (287), Expect = 3.982e-25
Identity = 73/207 (35.27%), Postives = 108/207 (52.17%), Query Frame = 0
Query:   12 CFVALPSSFTHR-LREDAAVSSGTVVLELQWTGLDGENCRAFVCWNGAVS-GGKIRGSDAGNAEVLEMDEAFARCLGLGPMLAVYRNVQLRVQRALVVEFPRRVELEPCTPDDWELVELHAGYLEAEILRQIAVVYAGQTLPIWIHAQKLVQLRVVNVSSRAPQRLSTSTEVVVAPCLRPPPVAHAHPFPEDDAPPVFLASPPLRVQ 216
            CFV LP +F    L     +++G+ +LEL W  LDG   R  V W G ++  G +R      ++++E+    ARC+G+   L       + V     +   R+V +EPCT DDWEL++LHAG +E E+LRQ+ VV   Q  PIWI+   L+++R    +     RL+ ++EV+VAP  R    A  H    D     +  SPP  VQ
Sbjct:   18 CFVNLPPAFVQAFLGGPELMNAGSTILELSWETLDGYVQRVCVGWIGGIAKDGALR------SDIVEIPAELARCVGIQDHLEKMPQAFIGVHVVEALSIARQVNVEPCTADDWELIQLHAGAIETELLRQMCVVNDKQVSPIWINQNTLIRIRASLPAGMEHARLTPASEVIVAPKERQVETAE-HALSPD---LYYEQSPPFIVQ 214          
BLAST of EWM21754.1 vs. NCBI_GenBank
Match: gi|669147812|ref|XP_008609468.1| (hypothetical protein SDRG_05527 [Saprolegnia diclina VS20] >gi|530739064|gb|EQC37306.1| hypothetical protein SDRG_05527 [Saprolegnia diclina VS20])

HSP 1 Score: 114.775 bits (286), Expect = 5.671e-25
Identity = 81/209 (38.76%), Postives = 107/209 (51.20%), Query Frame = 0
Query:   12 CFVALPSSFTHRLREDAAVSSGTVVLELQWTGLDG-ENCRAFVCWNGAVSGGKIRGSDAGNAEVLEMDEAFARCLGLGPMLAVYRNVQLRVQRALVVEFPR--RVELEPCTPDDWELVELHAGYLEAEILRQIAVVYAGQTLPIWIHAQKLVQLRVVNVSSRAPQRLSTSTEVVVAPCLRPPPVAHAHPFPEDDAPPVFLASPPLRVQP 217
            CF+ALP +F       A  ++G  VL+L W   DG E   A V W G  S    +      AE LE+   F RCLGL    A+ R+  LR+  A+    P    V +EPCT DDWE+++LHAG+LE+E+LRQI VV  GQ +P+ I    +V L V         RLS + E+ +AP  R           +D  P  + ASPPL  QP
Sbjct:   18 CFIALPEAFVRSHLHHANPNAGATVLQLSWH--DGPEPMMAHVGWVGEFS----QRYAMHLAEALEVPMEFGRCLGLAD--AMERSPGLRISVAVAAFTPTVPMVHMEPCTADDWEIIQLHAGHLESEVLRQICVVQNGQEIPVRIQQHMVVHLLVTLPPDVPCARLSANCEIAIAPKTR--------TVLDDPTPAYYDASPPLARQP 210          
BLAST of EWM21754.1 vs. NCBI_GenBank
Match: gi|570995714|gb|ETP52510.1| (hypothetical protein F442_02492 [Phytophthora parasitica P10297])

HSP 1 Score: 114.005 bits (284), Expect = 1.245e-24
Identity = 74/208 (35.58%), Postives = 104/208 (50.00%), Query Frame = 0
Query:   12 CFVALPSSFTHRLREDAAVSS--GTVVLELQWTGLDGENCRAFVCW-NGAVSGGKIRGSDAGNAEVLEMDEAFARCLGLGPMLAVYRNVQLRVQRALVVEFPRRVELEPCTPDDWELVELHAGYLEAEILRQIAVVYAGQTLPIWIHAQKLVQLRVVNVSSRAPQRLSTSTEVVVAPCLRPPPVAHAHPFPEDDAPPVFLASPPLRVQ 216
            CFV LP +F         + S  G  +LEL W  LDG   R  V W  G V  G +R      ++++EM    ARC+G+   L       + V     +   R+V +EPCTPDDWEL++LHAG +E E+LRQ+ VV   Q  PIWI+   L+++R          RL+ ++EV+VAP  R      +   P+      +  SP L VQ
Sbjct:   18 CFVNLPPAFVQAFVGGPELMSVAGATILELSWETLDGYVQRVCVGWIGGIVKDGALR------SDIIEMPIELARCVGIQDHLEKMPQAFIGVHVVEALPIARQVSVEPCTPDDWELIQLHAGAVETELLRQMCVVNDKQVSPIWINQNTLIRIRASLPVGMEHARLTPASEVIVAPKERQVQTTESGMSPD----LYYEQSPSLLVQ 215          
The following BLAST results are available for this feature:
BLAST of EWM21754.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102086|gb|EWM21754.1|0.000e+0100.00peroxisomal biogenesis factor 1, partial [Nannochl... [more]
gi|1026967237|ref|XP_016610534.1|6.354e-2836.32hypothetical protein SPPG_02954 [Spizellomyces pun... [more]
gi|1183334087|gb|ORX63604.1|1.498e-2740.64AAA-domain-containing protein [Basidiobolus merist... [more]
gi|1183379753|gb|ORY05217.1|5.406e-2740.64AAA-domain-containing protein [Basidiobolus merist... [more]
gi|1173928688|gb|OQR82220.1|4.780e-2640.67peroxisome biogenesis factor [Thraustotheca clavat... [more]
gi|66804599|ref|XP_636032.1|2.736e-2532.32peroxisomal biogenesis factor 1 [Dictyostelium dis... [more]
gi|1214696804|gb|OWZ10233.1|3.522e-2535.85Peroxisome biogenesis factor [Phytophthora megakar... [more]
gi|301113936|ref|XP_002998738.1|3.982e-2535.27peroxisome biogenesis factor, putative [Phytophtho... [more]
gi|669147812|ref|XP_008609468.1|5.671e-2538.76hypothetical protein SDRG_05527 [Saprolegnia dicli... [more]
gi|570995714|gb|ETP52510.1|1.245e-2435.58hypothetical protein F442_02492 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8945rna8945Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications