EWM21782.1, cds8901 (CDS) Nannochloropsis gaditana

Overview
NameEWM21782.1
Unique Namecds8901
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:514949..514993 -
Alignment locationKK037250.1:514660..514881 -
Alignment locationKK037250.1:513433..514326 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21782.1
ProductPhosducin, thioredoxin-like domain protein
Orig transcript idgnl|cribi|Naga_100188g12.2465.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:514949..514993 -
KK037250.1supercontigKK037250.1:514660..514881 -
KK037250.1supercontigKK037250.1:513433..514326 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR024253Phosducin_thioredoxin-like_dom
IPR012336Thioredoxin-like_fold
IPR023196Phosducin_N_dom
Homology
BLAST of EWM21782.1 vs. NCBI_GenBank
Match: gi|585102117|gb|EWM21782.1| (Phosducin, thioredoxin-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 804.668 bits (2077), Expect = 0.000e+0
Identity = 386/386 (100.00%), Postives = 386/386 (100.00%), Query Frame = 0
Query:    1 MSVILGSKKGDHDAHRYDHRSEQPAHKHRHIANLDILGIIRLEEAHAGCKKGGGLRRRDWRAASLRDRGGKHRPKQRRGSGNDMAIFLFDDNSSMNGKGATLENTFFQSNVPGRYTSWTEDGHHAVSDGFEKGEDEQPWSFNAEDCIMEMRCPPNRHGDRFGSKTGPKGVLADYKAHAKAMQDLKREENEHRQYVLFRIADGGTSKSKTRIESSSWPNILDSKDEDSPSINAGDDDFVELQRVRWLADMKQLSVQQAAVRPRILFGEVEETSGTDMVDKIDALLESSPTTKVVVHVYEPHLPACRLLNSILPYLARNYPAVCFLRLHQGLNLPRSNLRLDTAALPMLLVYEKGEVQECVAQVDACLGAAFLCEDVEGLLEEKGVLG 386
            MSVILGSKKGDHDAHRYDHRSEQPAHKHRHIANLDILGIIRLEEAHAGCKKGGGLRRRDWRAASLRDRGGKHRPKQRRGSGNDMAIFLFDDNSSMNGKGATLENTFFQSNVPGRYTSWTEDGHHAVSDGFEKGEDEQPWSFNAEDCIMEMRCPPNRHGDRFGSKTGPKGVLADYKAHAKAMQDLKREENEHRQYVLFRIADGGTSKSKTRIESSSWPNILDSKDEDSPSINAGDDDFVELQRVRWLADMKQLSVQQAAVRPRILFGEVEETSGTDMVDKIDALLESSPTTKVVVHVYEPHLPACRLLNSILPYLARNYPAVCFLRLHQGLNLPRSNLRLDTAALPMLLVYEKGEVQECVAQVDACLGAAFLCEDVEGLLEEKGVLG
Sbjct:    1 MSVILGSKKGDHDAHRYDHRSEQPAHKHRHIANLDILGIIRLEEAHAGCKKGGGLRRRDWRAASLRDRGGKHRPKQRRGSGNDMAIFLFDDNSSMNGKGATLENTFFQSNVPGRYTSWTEDGHHAVSDGFEKGEDEQPWSFNAEDCIMEMRCPPNRHGDRFGSKTGPKGVLADYKAHAKAMQDLKREENEHRQYVLFRIADGGTSKSKTRIESSSWPNILDSKDEDSPSINAGDDDFVELQRVRWLADMKQLSVQQAAVRPRILFGEVEETSGTDMVDKIDALLESSPTTKVVVHVYEPHLPACRLLNSILPYLARNYPAVCFLRLHQGLNLPRSNLRLDTAALPMLLVYEKGEVQECVAQVDACLGAAFLCEDVEGLLEEKGVLG 386          
BLAST of EWM21782.1 vs. NCBI_GenBank
Match: gi|358341101|dbj|GAA27679.2| (phosducin-like protein [Clonorchis sinensis])

HSP 1 Score: 101.293 bits (251), Expect = 7.211e-21
Identity = 76/225 (33.78%), Postives = 119/225 (52.89%), Query Frame = 0
Query:  164 KTGPKGVLADYKAHAKAMQDLKREENEHRQYVLFRIADGGTSKSKTRI---ESSSWPNILDSKDEDSPSINAGDDDFVELQRVRWLADMKQLSVQQAAVRPRILFGEVEETSGTDMVDKIDALLESSPTTKVVVHVYEPHLPACRLLNSILPYLARNYPAVCFLRLHQGLNLPRSNLRLDTAALPMLLVYEKGEVQECVAQVDACLGAAFLCEDVEGLLEEKGVL 385
            +TGPKGVL+DYK + KA++ LK  + E     L   A   T  S+T +     SS   +L+S D+D        D+F+ + R   + ++K +S+++  V     FG V   + ++ V +ID+   + P+  VVVH+YEP   ACR +N  L  L   YP V F R+ Q  N   S  +   + +P ++VY++GEV   + ++D  LG  F   D+E  L E+G L
Sbjct:   57 QTGPKGVLSDYKQY-KALERLKEAQKEQE---LIEAAKKNTLTSQTHVCFDIVSSEFEVLESLDDD--------DEFIAMYRQNRMRELK-MSLERLPV-----FGTVCTLTSSNFVQEIDS---TDPSVTVVVHIYEPDNSACRKVNDYLETLCTEYPHVRFCRI-QASNAHLS-YQFSRSGVPAIVVYKRGEVIGNMLRIDRDLGNEFYASDLENFLVERGFL 258          
BLAST of EWM21782.1 vs. NCBI_GenBank
Match: gi|684374618|ref|XP_009164800.1| (hypothetical protein T265_02322 [Opisthorchis viverrini] >gi|663055493|gb|KER31409.1| hypothetical protein T265_02322 [Opisthorchis viverrini])

HSP 1 Score: 100.138 bits (248), Expect = 2.452e-20
Identity = 75/229 (32.75%), Postives = 120/229 (52.40%), Query Frame = 0
Query:  164 KTGPKGVLADYKAHAKAMQDLKREENEHRQYVLFRIADGGTSKSKT-------RIESSSWPNILDSKDEDSPSINAGDDDFVELQRVRWLADMKQLSVQQAAVRPRILFGEVEETSGTDMVDKIDALLESSPTTKVVVHVYEPHLPACRLLNSILPYLARNYPAVCFLRLHQGLNLPRSNLRLDTAALPMLLVYEKGEVQECVAQVDACLGAAFLCEDVEGLLEEKGVL 385
            +TGPKGVL+DYK + KA++ LK  + E     L   A   T  S+T       +++  +   +L+S D+D        D+F+ L R   + ++K +S+++  V     FG V   + ++ V +ID+   + P+  VVVH+YEP   ACR +N  L  L   YP V F R+ Q  N   S  +   + +P ++VY++GEV   + ++D  LG  F   D+E  L E+G L
Sbjct:   73 QTGPKGVLSDYKQY-KALERLKEAQKEEE---LIDAAKKNTLISQTHAEECVTKMQDLAVSEVLESLDDD--------DEFIALYRQNRMRELK-MSLERLPV-----FGTVYTLTSSNFVQEIDS---TDPSVTVVVHIYEPDNSACRKVNDYLETLCTEYPHVRFCRI-QASNAHLS-YQFSRSGVPAIVVYKRGEVIGNMLRIDRDLGNEFYASDLENFLVERGFL 278          
BLAST of EWM21782.1 vs. NCBI_GenBank
Match: gi|695448669|ref|XP_009535041.1| (hypothetical protein PHYSODRAFT_549383 [Phytophthora sojae] >gi|348670358|gb|EGZ10180.1| hypothetical protein PHYSODRAFT_549383 [Phytophthora sojae])

HSP 1 Score: 90.1225 bits (222), Expect = 8.345e-17
Identity = 78/253 (30.83%), Postives = 113/253 (44.66%), Query Frame = 0
Query:  138 PWSFNAEDCIMEMRCPPNR-----HGDRFGS-KTGPKGVLADYKAHAKAMQDLKREENEHRQYVLFRIADGGTSKSKTRIESSSWPNILDSKDEDSPSINAGDDDFVELQRVRWLADMKQLSVQQA--AVRPRILFGEVEETSGTDMVDKIDALLESSPTTKVVVHVYEPHLPACRLLNSILPYLARNYPAVCFLRLHQGLNLPRSNLRLDTAALPMLLVYEKGEVQECVAQVDACLGAAFLCEDVEGLLEEK 382
            PW   A D   E    P R      G  F S  TGPKGV+ DYKAH +  ++ +  +   RQ VL RIA G T  S    +  +    L+ K E        D D V+     +LA   +L V+Q   AV+ R +FG++E  +  + V        + P   +VVH+Y     AC LLN+ L  LAR    + F      +    ++  ++ A LP++L+    + QE V  V   L   F  E VE  + E+
Sbjct:   49 PWRQKAVDG--ETWGKPTRGFRGGKGRDFASANTGPKGVINDYKAHKRHQKEERLRKEAERQAVLNRIAKGATVSSTAATQDPTAH--LECKCEGGSDCECDDSDLVDDA---FLAQYAELRVKQMQEAVKKRKVFGQLEFITPEEFVALTSKKESAEPGNDMVVHLYHSENYACGLLNTQLELLARKLVHIKFA----AMVAKEADASIEMADLPVILICRGQQQQEAVVDVARRLDGEFTLERVEAFIREQ 290          
BLAST of EWM21782.1 vs. NCBI_GenBank
Match: gi|397643542|gb|EJK75931.1| (hypothetical protein THAOC_02330 [Thalassiosira oceanica])

HSP 1 Score: 90.1225 bits (222), Expect = 8.715e-17
Identity = 84/290 (28.97%), Postives = 133/290 (45.86%), Query Frame = 0
Query:  100 ATLENTFFQSNVPGRYTSWTED----GHHAVSDGFEKGEDEQPWSFNAEDCIMEMRCPPNRHGDRFGSKTGPKGVLADYKAHAKAMQDLKREENEHRQYVLFRIADGGTSKSKTRIESSSWPNILDSKDEDSPSINAGDDDFVELQRVRWLADMKQLSVQQAAVRPRILFGEVEETSGTDMVDKIDALLESSPTTKVVVHVYEPHLPACRLLNSILPYLARNYPAVCFLRLHQGLNLPRSNLRLDTAALPMLLVYEKGEVQECVAQVDACLGAAFLCEDVEGLLEEKGVL 385
            A LE++F +SNVPGRY++W +D    G+    DG  + +DE  +S +A D              R G+ TG KGV+ADY   A+  + L   E    +  + R   G T  ++   +    P    +  ED    +  DD+FV+  R R ++ ++      A +    ++         D+ D ID      P   ++VH+ E  +  CR L+S L  LA   P   F+R    ++   +N  LD   LP +LVY+ GE++  + +    L   F  EDV  +LE  GV+
Sbjct:    2 ADLEDSFLKSNVPGRYSTWADDAEGGGNKRKIDGDSETDDEYYFS-DAPDVPGPQLPLQPPSMRRTGN-TGVKGVIADYN-EARQRKALDEAEERLERLEILR---GATDPAR---QGRHSPRDSAADREDDGQRSGDDDEFVKKYRSRRMSQLR----DNATLPSYGVYSRATPEEYCDLTDSID------PRCHLIVHLCEGSILPCRRLDSALDKLALCMPHAKFIR----VDALEANPNLDAICLPAVLVYKGGELKHNLVRFTDELPRDFTVEDVREVLEGIGVI 268          
BLAST of EWM21782.1 vs. NCBI_GenBank
Match: gi|570323395|gb|ETO71343.1| (hypothetical protein F444_12351 [Phytophthora parasitica P1976])

HSP 1 Score: 89.7373 bits (221), Expect = 9.679e-17
Identity = 72/225 (32.00%), Postives = 108/225 (48.00%), Query Frame = 0
Query:  159 DRFGSKTGPKGVLADYKAHAKAMQDLKREENEHRQYVLFRIADGGTSKSKTRIESSSWPNILDSKDEDSPSINAGDDDFVELQRVRWLADMKQLSVQQAAVRPRILFGEVEETSGTDMVDKIDALLESSPTTK-VVVHVYEPHLPACRLLNSILPYLARNYPAVCFLRLHQGLNLPRSNLRLDTAALPMLLVYEKGEVQECVAQVDACLGAAFLCEDVEGLLEEK 382
            D   + TGPKGV+ DYK H +  +  ++ +   R+ VL RIA G T  S      S+    LD + +        D D V+   +   A+M+   +Q AA R R ++GE+E  +    V    AL   + T + ++VH+Y P   AC LLNS L  LAR    V F      +    ++  ++ A LP++LV+ +G  QE V  V   L   F  E VE  + E+
Sbjct:   73 DFASANTGPKGVINDYKTHKRYQKQERQRKEAEREAVLTRIAKGATVSSTPSTRDSTAH--LDCECDGGSDCECDDSDLVDDAFLAQYAEMRVKQMQDAA-RNRKVYGELEYITPEQFV----ALTSKADTDRSMLVHLYHPENYACGLLNSQLELLARKLVHVKFT----AMLAKEADASIEMADLPVVLVF-RGHQQEVVVDVTRRLDGEFTLERVEAFVREQ 285          
BLAST of EWM21782.1 vs. NCBI_GenBank
Match: gi|1139818729|ref|XP_019926610.1| (PREDICTED: phosducin-like protein isoform X1 [Crassostrea gigas] >gi|1139818733|ref|XP_019926612.1| PREDICTED: phosducin-like protein isoform X1 [Crassostrea gigas] >gi|1139818735|ref|XP_019926613.1| PREDICTED: phosducin-like protein isoform X1 [Crassostrea gigas])

HSP 1 Score: 90.1225 bits (222), Expect = 1.010e-16
Identity = 70/266 (26.32%), Postives = 135/266 (50.75%), Query Frame = 0
Query:  123 HHAVSDGFEKGEDEQPWSFNAE---DCIMEMRCPPNRHGDRFGSKTGPKGVLADYKAHAKAMQDLKREENEHRQYVLFRIADGGTSKSKTRIESSSWPNILDSKDEDSPSINAGDDDFVELQRVRWLADMKQLSVQQAAVRPRILFGEVEETSGTDMVDKIDALLESSPTTKVVVHVYEPHLPACRLLNSILPYLARNYPAVCFLRLHQGLNLPRSNLRLDTAALPMLLVYEKGEVQECVAQVDACLGAAFLCEDVEGLLEEKGVL 385
            ++  SD  E+ E+++P    AE    CI E   P  +  ++F + TGPKGV+ D++   +   + + E+ + +Q +  +++    S      E  +   +L         + + +D+F++  R + + +M+ +++Q     P+  FG V E S ++ VD+ID   +  P   +++H+YE ++ AC  +N  L  LA+ YP V F ++    +   S+ +  T+ +P LL+Y+ GE+     ++   LG  F   D+EG L E  +L
Sbjct:   16 NYCSSDEGEQEEEDKPKK-EAEPKASCIPE---PQLKDYNKFSTNTGPKGVINDWREFKRLETERRAEQEKEKQALAKKLSMTCRSHLDDEREKENDDKLLQE-------LESFEDEFLKEYRQKRIEEMR-IALQNV---PK--FGRVVELSSSNFVDEID---KEKPQVTIIIHLYENNVEACEAMNGCLSCLAQEYPTVKFCKIRAS-DTSLSH-KFSTSGVPALLIYKGGELIGNFVRLSDELGEDFYVTDIEGFLHEHSLL 259          
BLAST of EWM21782.1 vs. NCBI_GenBank
Match: gi|1139818731|ref|XP_019926611.1| (PREDICTED: phosducin-like protein isoform X2 [Crassostrea gigas])

HSP 1 Score: 89.3521 bits (220), Expect = 1.778e-16
Identity = 70/266 (26.32%), Postives = 134/266 (50.38%), Query Frame = 0
Query:  123 HHAVSDGFEKGEDEQPWSFNAE---DCIMEMRCPPNRHGDRFGSKTGPKGVLADYKAHAKAMQDLKREENEHRQYVLFRIADGGTSKSKTRIESSSWPNILDSKDEDSPSINAGDDDFVELQRVRWLADMKQLSVQQAAVRPRILFGEVEETSGTDMVDKIDALLESSPTTKVVVHVYEPHLPACRLLNSILPYLARNYPAVCFLRLHQGLNLPRSNLRLDTAALPMLLVYEKGEVQECVAQVDACLGAAFLCEDVEGLLEEKGVL 385
            ++  SD  E+ E+++P    AE    CI E   P  +  ++F + TGPKGV+ D++   +   + + E+ + +Q +  +++    S      E  +   +L         + + +D+F++  R + + +M+ +++Q     P+  FG V E S  + VD+ID   +  P   +++H+YE ++ AC  +N  L  LA+ YP V F ++    +   S+ +  T+ +P LL+Y+ GE+     ++   LG  F   D+EG L E  +L
Sbjct:   16 NYCSSDEGEQEEEDKPKK-EAEPKASCIPE---PQLKDYNKFSTNTGPKGVINDWREFKRLETERRAEQEKEKQALAKKLSMTCRSHLDDEREKENDDKLLQE-------LESFEDEFLKEYRQKRIEEMR-IALQNV---PK--FGRVVELSSANFVDEID---KEKPQVTIIIHLYENNVEACEAMNGCLSCLAQEYPTVKFCKIRAS-DTSLSH-KFSTSGVPALLIYKGGELIGNFVRLSDELGEDFYVTDIEGFLHEHSLL 259          
BLAST of EWM21782.1 vs. NCBI_GenBank
Match: gi|397628791|gb|EJK69054.1| (hypothetical protein THAOC_09728 [Thalassiosira oceanica])

HSP 1 Score: 88.9669 bits (219), Expect = 2.137e-16
Identity = 82/290 (28.28%), Postives = 131/290 (45.17%), Query Frame = 0
Query:  100 ATLENTFFQSNVPGRYTSWTED----GHHAVSDGFEKGEDEQPWSFNAEDCIMEMRCPPNRHGDRFGSKTGPKGVLADYKAHAKAMQDLKREENEHRQYVLFRIADGGTSKSKTRIESSSWPNILDSKDEDSPSINAGDDDFVELQRVRWLADMKQLSVQQAAVRPRILFGEVEETSGTDMVDKIDALLESSPTTKVVVHVYEPHLPACRLLNSILPYLARNYPAVCFLRLHQGLNLPRSNLRLDTAALPMLLVYEKGEVQECVAQVDACLGAAFLCEDVEGLLEEKGVL 385
            A LE++F +SNVPGRY++W +D    G+    D   + +DE  + F     +   R P      R    TG KGV+ADY   A+  + L   E    +  + R A G   + +     S+     D +D      ++ DD+FV+  R R ++ ++      A +    ++         D+ D ID      P   ++VH+ E  +  CR L+S L  LA   P   F+R    ++   +N  LD   LP +LVY+ GE++  + +    L   F  EDV  +LE  GV+
Sbjct:    2 ADLEDSFLKSNVPGRYSTWADDAEGGGNKREIDDDSETDDE--YYFRDAPDVPGPRLPLQPPSMRRTGNTGVKGVIADYN-EARQRKALDEAEERLERLEILRGATGPARQGRHSPRDSAA----DRED----GQHSDDDEFVKNYRTRRMSQLR----DNATLPSYGVYSRATPEEYCDLTDSID------PRCHLIVHLCEGSILPCRRLDSALDKLALCMPRAKFIR----VDALEANPNLDAICLPAVLVYKSGELKHNLVRFTDELPRDFTVEDVREVLEGIGVI 266          
BLAST of EWM21782.1 vs. NCBI_GenBank
Match: gi|570979665|gb|ETP40575.1| (hypothetical protein F442_12160 [Phytophthora parasitica P10297])

HSP 1 Score: 88.1965 bits (217), Expect = 3.794e-16
Identity = 73/225 (32.44%), Postives = 108/225 (48.00%), Query Frame = 0
Query:  159 DRFGSKTGPKGVLADYKAHAKAMQDLKREENEHRQYVLFRIADGGTSKSKTRIESSSWPNILDSKDEDSPSINAGDDDFVELQRVRWLADMKQLSVQQAAVRPRILFGEVEETSGTDMVDKIDALLESSPTTK-VVVHVYEPHLPACRLLNSILPYLARNYPAVCFLRLHQGLNLPRSNLRLDTAALPMLLVYEKGEVQECVAQVDACLGAAFLCEDVEGLLEEK 382
            D   + TGPKGV+ DYKAH +  +  ++ +   R+ VL RIA G T  S      S+    LD + +        D D V+   +   A+M+   +Q AA R R ++GE+E  +    V    AL   + T + ++VH+Y P   AC LLNS L  LAR    V F      +    ++  ++ A LP++LV+  G  QE V  V   L   F  E VE  + E+
Sbjct:   73 DFASANTGPKGVINDYKAHKRYQKQERQWKEAEREAVLTRIAKGATVSSTPSTRDSTAH--LDCECDGGSDCECDDSDLVDDAFLAQYAEMRVKQMQDAA-RNRKVYGELEYITPEQFV----ALTSKADTDRSMLVHLYHPENYACGLLNSQLELLARKLVHVKF----TAMLAKEADASIEMADLPVVLVF-CGHQQEVVVDVTRRLDGEFTLERVEAFVREQ 285          
The following BLAST results are available for this feature:
BLAST of EWM21782.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102117|gb|EWM21782.1|0.000e+0100.00Phosducin, thioredoxin-like domain protein [Nannoc... [more]
gi|358341101|dbj|GAA27679.2|7.211e-2133.78phosducin-like protein [Clonorchis sinensis][more]
gi|684374618|ref|XP_009164800.1|2.452e-2032.75hypothetical protein T265_02322 [Opisthorchis vive... [more]
gi|695448669|ref|XP_009535041.1|8.345e-1730.83hypothetical protein PHYSODRAFT_549383 [Phytophtho... [more]
gi|397643542|gb|EJK75931.1|8.715e-1728.97hypothetical protein THAOC_02330 [Thalassiosira oc... [more]
gi|570323395|gb|ETO71343.1|9.679e-1732.00hypothetical protein F444_12351 [Phytophthora para... [more]
gi|1139818729|ref|XP_019926610.1|1.010e-1626.32PREDICTED: phosducin-like protein isoform X1 [Cras... [more]
gi|1139818731|ref|XP_019926611.1|1.778e-1626.32PREDICTED: phosducin-like protein isoform X2 [Cras... [more]
gi|397628791|gb|EJK69054.1|2.137e-1628.28hypothetical protein THAOC_09728 [Thalassiosira oc... [more]
gi|570979665|gb|ETP40575.1|3.794e-1632.44hypothetical protein F442_12160 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8931rna8931Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications