EWM21798.1, cds8888 (CDS) Nannochloropsis gaditana

Overview
NameEWM21798.1
Unique Namecds8888
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:478212..478303 +
Alignment locationKK037250.1:478431..478812 +
Alignment locationKK037250.1:478988..479137 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21798.1
ProductProtein of unknown function DUF3119
Orig transcript idgnl|cribi|Naga_100065g2.7389.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:478212..478303 +
KK037250.1supercontigKK037250.1:478431..478812 +
KK037250.1supercontigKK037250.1:478988..479137 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR021467DUF3119
Homology
BLAST of EWM21798.1 vs. NCBI_GenBank
Match: gi|585102134|gb|EWM21798.1| (Protein of unknown function DUF3119 [Nannochloropsis gaditana])

HSP 1 Score: 416.387 bits (1069), Expect = 3.811e-147
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0
Query:    1 MLALRTAFFILLPALAAGFLMPTPSLSKPFSIITRSRGVPARLPVTALNSWGGKKQKTTRVAVEPEVIAPDYRVAAGFFLGGVGLALPPLSNPGAGLPLALIGAFLASRTQKVRFVFDEEAMEVMTVGADGQSLSMERENFAVGGRNRWTYTSFTNWEFYPSEQVPVLVYFKETQTKPEGQIHFFPVIGNPARLLENFRKYVPLPGK 207
            MLALRTAFFILLPALAAGFLMPTPSLSKPFSIITRSRGVPARLPVTALNSWGGKKQKTTRVAVEPEVIAPDYRVAAGFFLGGVGLALPPLSNPGAGLPLALIGAFLASRTQKVRFVFDEEAMEVMTVGADGQSLSMERENFAVGGRNRWTYTSFTNWEFYPSEQVPVLVYFKETQTKPEGQIHFFPVIGNPARLLENFRKYVPLPGK
Sbjct:    1 MLALRTAFFILLPALAAGFLMPTPSLSKPFSIITRSRGVPARLPVTALNSWGGKKQKTTRVAVEPEVIAPDYRVAAGFFLGGVGLALPPLSNPGAGLPLALIGAFLASRTQKVRFVFDEEAMEVMTVGADGQSLSMERENFAVGGRNRWTYTSFTNWEFYPSEQVPVLVYFKETQTKPEGQIHFFPVIGNPARLLENFRKYVPLPGK 207          
BLAST of EWM21798.1 vs. NCBI_GenBank
Match: gi|553179449|ref|XP_005852703.1| (hypothetical protein NGA_0681310 [Nannochloropsis gaditana CCMP526] >gi|422295829|gb|EKU23128.1| hypothetical protein NGA_0681310 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 414.461 bits (1064), Expect = 2.205e-146
Identity = 206/207 (99.52%), Postives = 206/207 (99.52%), Query Frame = 0
Query:    1 MLALRTAFFILLPALAAGFLMPTPSLSKPFSIITRSRGVPARLPVTALNSWGGKKQKTTRVAVEPEVIAPDYRVAAGFFLGGVGLALPPLSNPGAGLPLALIGAFLASRTQKVRFVFDEEAMEVMTVGADGQSLSMERENFAVGGRNRWTYTSFTNWEFYPSEQVPVLVYFKETQTKPEGQIHFFPVIGNPARLLENFRKYVPLPGK 207
            MLALRTAFFILLPALAAGFLMPTPSLSKPFSIITRSRGVPARLPVTALNSWGGKKQKTTRVAVEPEVIAPDYRVAAGFFLGGVGLALPPLSNPGAGLPLALIGAFLASRTQKVRFVFDEEAMEVMTVGADGQSLSMERENFAVGGRNRWTY SFTNWEFYPSEQVPVLVYFKETQTKPEGQIHFFPVIGNPARLLENFRKYVPLPGK
Sbjct:    1 MLALRTAFFILLPALAAGFLMPTPSLSKPFSIITRSRGVPARLPVTALNSWGGKKQKTTRVAVEPEVIAPDYRVAAGFFLGGVGLALPPLSNPGAGLPLALIGAFLASRTQKVRFVFDEEAMEVMTVGADGQSLSMERENFAVGGRNRWTYASFTNWEFYPSEQVPVLVYFKETQTKPEGQIHFFPVIGNPARLLENFRKYVPLPGK 207          
BLAST of EWM21798.1 vs. NCBI_GenBank
Match: gi|873227988|emb|CEM17412.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 145.206 bits (365), Expect = 5.778e-40
Identity = 93/205 (45.37%), Postives = 123/205 (60.00%), Query Frame = 0
Query:    1 MLALRTAFFILLPALAAGFLMPTPSLSKPFSIITRSRGVPARLPVTALNSWGGKKQKTTRVAVEPEVIAPDYRVAAGFFLGGVGLALPPLSNPGAGLPLALIGAFLASRTQKVRFVFDEEAMEVMTVGADG--QSLSMERENFAVGGRNRWTYTSFTNWEFYPSEQVPVLVYFKETQTKPEGQIHFFPVIGNPARLLENFRKYVP 203
            ML L +AF  ++P   +      PSLS       RS G  +   +    +   KK   ++   E  V+ PD+R+AAGF  GG  L L   +N  AG+P+ LIGAFLA +T +VRF FD +++EV  +  DG  ++L+   +NFAVGG NRW Y +FTNWE YPS  +P+LVYFKETQT PEGQIHFFPVI N  +L E   +  P
Sbjct:   15 MLQLSSAFTSVIPEPTSMIPSRQPSLSLRNMRARRSGGASSLSMLGNFFNSDPKKAAVSKAKYETVVVPPDFRLAAGFVAGGAALCLA-ANNYAAGVPIGLIGAFLALQTTRVRFEFDADSLEVKILKKDGDAETLADSGDNFAVGGANRWKYDTFTNWEMYPSPSLPILVYFKETQTIPEGQIHFFPVIMNGRKLYEIMEERCP 218          
BLAST of EWM21798.1 vs. NCBI_GenBank
Match: gi|298710251|emb|CBJ26326.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 138.272 bits (347), Expect = 1.616e-37
Identity = 71/165 (43.03%), Postives = 103/165 (62.42%), Query Frame = 0
Query:   39 VPARLPVTALNSWGGKKQKTTRVAVEPEVIAPDYRVAAGFFLGGVGLALPPLSNPGAGLPLALIGAFLASRTQKVRFVFDEEAMEVMTVGADGQSLSMERENFAVGGRNRWTYTSFTNWEFYPSEQVPVLVYFKETQTKPEGQIHFFPVIGNPARLLENFRKYVP 203
            +P+R   TA      +++++  + +   V+  D+++  G  +   GLA+  L N GAG P++++G  LA +  +V+F FD+ AMEV  +G     L    EN  VGG +RW Y ++TNWE YPSE++P+L+YFKETQTKPEGQIHFFP I  P  LL+  R  VP
Sbjct:   48 IPSRCVATA-----ERRRRSGDLGMSTVVVPSDFKLPIG--IAAFGLAITGLGNVGAGFPVSVVGLLLAFQATRVKFEFDDVAMEV-KIGETPDELESSGENAFVGGESRWNYDTWTNWEVYPSEKLPILMYFKETQTKPEGQIHFFPFIMEPDVLLQEVRARVP 204          
BLAST of EWM21798.1 vs. NCBI_GenBank
Match: gi|125552271|gb|EAY97980.1| (hypothetical protein OsI_19899 [Oryza sativa Indica Group] >gi|222631531|gb|EEE63663.1| hypothetical protein OsJ_18481 [Oryza sativa Japonica Group])

HSP 1 Score: 125.946 bits (315), Expect = 5.714e-33
Identity = 80/183 (43.72%), Postives = 104/183 (56.83%), Query Frame = 0
Query:   20 LMPTPSLSKPFSIIT--RSRGVPARLPVTALNSWG----GKKQKTTRVAVEPEVIAPDYRVAAGFFLGGVGLALPPLSNPGAGLPLALIGAFLASRTQKVRFVFDEEAMEVMTVGADGQSLSMERENFAVGGRNRWTYTSFTNWEFYPSEQVPVLVYFKETQTKPEGQIHFFPVIGNPARLLE 196
            +M T SLS P  +    + +GV +     A  SW     G+K KT R  + P+   PDYR+     + G+  A     N  A  P+ L+G  L  +T +VRFVFD+EA+EV      G  L    EN  VGG+NRW Y++F NWE +   Q P+LVYFKETQTKPEGQIHFFPVI N  +L +
Sbjct:    1 MMSTLSLSSPLFLAAPPKVQGVISCRAALASASWNSVMLGRKSKT-RETIVPD---PDYRLP--IVILGIAGAFAYADNLLAAAPVGLLGCLLLFQTTRVRFVFDDEALEVKV----GDQLEESGENVFVGGKNRWRYSTFVNWELW-WPQFPILVYFKETQTKPEGQIHFFPVIFNGRQLYD 172          
BLAST of EWM21798.1 vs. NCBI_GenBank
Match: gi|1002267152|ref|XP_015637902.1| (PREDICTED: uncharacterized protein LOC4338730 [Oryza sativa Japonica Group] >gi|937919001|dbj|BAS93919.1| Os05g0401200 [Oryza sativa Japonica Group])

HSP 1 Score: 124.79 bits (312), Expect = 2.362e-32
Identity = 81/193 (41.97%), Postives = 106/193 (54.92%), Query Frame = 0
Query:   20 LMPTPSLSKPFSIIT--RSRGVPARLPVTALNSW------GGKKQKTTRVAV--------EPEVIAPDYRVAAGFFLGGVGLALPPLSNPGAGLPLALIGAFLASRTQKVRFVFDEEAMEVMTVGADGQSLSMERENFAVGGRNRWTYTSFTNWEFYPSEQVPVLVYFKETQTKPEGQIHFFPVIGNPARLLE 196
            +M T SLS P  +    + +GV +     A  SW      GG++++ T V V        E  V  PDYR+     + G+  A     N  A  P+ L+G  L  +T +VRFVFD+EA+EV      G  L    EN  VGG+NRW Y++F NWE +   Q P+LVYFKETQTKPEGQIHFFPVI N  +L +
Sbjct:    1 MMSTLSLSSPLFLAAPPKVQGVISCRAALASASWNSVMVHGGRQRRATIVNVLGRKSKTRETIVPDPDYRLP--IVILGIAGAFAYADNLLAAAPVGLLGCLLLFQTTRVRFVFDDEALEVKV----GDQLEESGENVFVGGKNRWRYSTFVNWELW-WPQFPILVYFKETQTKPEGQIHFFPVIFNGRQLYD 186          
BLAST of EWM21798.1 vs. NCBI_GenBank
Match: gi|224000848|ref|XP_002290096.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973518|gb|EED91848.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 122.865 bits (307), Expect = 2.558e-31
Identity = 74/184 (40.22%), Postives = 103/184 (55.98%), Query Frame = 0
Query:   25 SLSKPFSIITRSRGVPARLPVTALNSWGGKKQKTTRVAVEPEVIAP-DYRVAAGFFLGGVGLALPPLSNPGA---GLPLALIGAFLASRTQKVRFVFDEEAMEVMTVGADGQSLSMERENFAVGGRNRWTYTSFTNWEFYPSEQVPVLVYFKETQT-KPE----GQIHFFPVIGNPARLLENFR 199
            +L KP +    + G P       L+  GG  +    V   P+V+   DY++AA F    V + +   ++ G    G  +AL+G+  A +  ++RFVFD++  E+  V AD + L+   EN  VGG NRW+Y SF NW+FYPS   P+LVYFKETQT KP+    GQIHFFP I N  +L E F 
Sbjct:   33 TLVKPLA----ADGNPFNFFKDVLSPSGGDAEVAAPVPAIPDVVVDSDYKLAAAFGAAAVSIVIATDASVGGSIFGGLIALLGSLFAVQATRIRFVFDQDCFELKAVDADTKQLADSGENIVVGGANRWSYDSFVNWDFYPSVDFPILVYFKETQTPKPDGGEPGQIHFFPAIANCKQLEEQFE 212          
BLAST of EWM21798.1 vs. NCBI_GenBank
Match: gi|573944040|ref|XP_006654375.1| (PREDICTED: uncharacterized protein LOC102721274 [Oryza brachyantha] >gi|1002855650|ref|XP_015692811.1| PREDICTED: uncharacterized protein LOC102721274 [Oryza brachyantha])

HSP 1 Score: 120.553 bits (301), Expect = 1.260e-30
Identity = 77/195 (39.49%), Postives = 102/195 (52.31%), Query Frame = 0
Query:    2 LALRTAFFILLPALAAGFLMPTPSLSKPFSIITRSRGVPARLPVTALNSWGGKKQKTTRVAVEPEVIAPDYRVAAGFFLGGVGLALPPLSNPGAGLPLALIGAFLASRTQKVRFVFDEEAMEVMTVGADGQSLSMERENFAVGGRNRWTYTSFTNWEFYPSEQVPVLVYFKETQTKPEGQIHFFPVIGNPARLLE 196
            L+L +  F+       G +     L  P     R  G       T +N  G K +  TR  + P+   PDYR+     + G+  A     N  A  P+ L+G  L  +T +VRFVFD++A+EV      G  L    EN  VGG+NRW Y++F NWE +   Q P+LVYFKETQTKPEGQIHFFPVI N  +L +
Sbjct:    5 LSLSSPLFLAALPKVRGVISCRADLGSPSRNSVRVHGGRQLRRATIVNVIGRKSK--TRETIVPD---PDYRLP--IVILGIAGAFAYADNLLAAAPVGLLGCLLLFQTTRVRFVFDDQALEVKV----GDQLESSGENVFVGGKNRWKYSTFVNWELW-WPQFPILVYFKETQTKPEGQIHFFPVIFNGRQLYD 187          
BLAST of EWM21798.1 vs. NCBI_GenBank
Match: gi|242061310|ref|XP_002451944.1| (uncharacterized protein LOC8059104 [Sorghum bicolor] >gi|241931775|gb|EES04920.1| hypothetical protein SORBI_3004G124400 [Sorghum bicolor])

HSP 1 Score: 119.783 bits (299), Expect = 3.055e-30
Identity = 83/204 (40.69%), Postives = 114/204 (55.88%), Query Frame = 0
Query:    2 LALRTAFFILLPALA---AGFLMPTPSLSKPFSIITRSRGVPARLPV------TALNSWGGKKQKTTRVAVEPEVIAPDYRVAAGFFLGGVGLALPPLSNPGAGLPLALIGAFLASRTQKVRFVFDEEAMEVMTVGADGQSLSMERENFAVGGRNRWTYTSFTNWEFYPSEQVPVLVYFKETQTKPEGQIHFFPVIGNPARLLE 196
            L+L +  F+  PA A     + + + S+S P ++    +G  +R+PV       A+ S  G+K+ T +  V P+   PDYR+       G+  A     N  A  P+ L+G  L  +T +VRFVFD EA+EV      G  L    EN  VGG+NRW Y++F NWE +   Q P+LVYFKETQTKPEGQIHFFPVI N  +L +
Sbjct:    5 LSLSSPLFLGAPARARDAISYGVASASIS-PTTVNVLGKGYTSRVPVREQQRRMAIVSVLGRKKSTAKETVVPD---PDYRLPIAIL--GIASAFAYADNLLAAAPVGLLGLLLLFQTTRVRFVFDNEALEVKV----GDQLQESGENVFVGGKNRWKYSTFVNWELW-WPQFPILVYFKETQTKPEGQIHFFPVIFNGRQLYD 197          
BLAST of EWM21798.1 vs. NCBI_GenBank
Match: gi|470101728|ref|XP_004287321.1| (PREDICTED: uncharacterized protein LOC101296996 [Fragaria vesca subsp. vesca])

HSP 1 Score: 117.087 bits (292), Expect = 2.606e-29
Identity = 74/151 (49.01%), Postives = 94/151 (62.25%), Query Frame = 0
Query:   47 ALNSWGGKKQKTTRVAVEPEVIAPDYRVAAGFFLGGVGLALPPLSNPGAGLPLALIGAFLASRTQKVRFVFDEEAMEVMTVGADGQSLSMERENFAVGGRNRWTYTSFTNWE-FYPSEQVPVLVYFKETQTKPEGQIHFFPVIGNPARLLE 196
             + S  G+K KTTR  V PE   PDYR+     L G+   L   +N     P+ L+G  L  +T +VRFVFDEEA+EV      G+ L    EN  VGG+NRW Y+SF NWE ++P+   P+LVYFKETQTKPEGQ+HFFPVI N  +L +
Sbjct:   50 VVTSVSGRKVKTTRETVIPE---PDYRIP--IVLLGLSGGLAYTNNLLPAAPVGLLGLLLLFQTTRVRFVFDEEALEVKV----GEELENSGENVFVGGKNRWKYSSFVNWELWWPN--FPILVYFKETQTKPEGQVHFFPVIFNGKQLYD 189          
The following BLAST results are available for this feature:
BLAST of EWM21798.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102134|gb|EWM21798.1|3.811e-147100.00Protein of unknown function DUF3119 [Nannochlorops... [more]
gi|553179449|ref|XP_005852703.1|2.205e-14699.52hypothetical protein NGA_0681310 [Nannochloropsis ... [more]
gi|873227988|emb|CEM17412.1|5.778e-4045.37unnamed protein product [Vitrella brassicaformis C... [more]
gi|298710251|emb|CBJ26326.1|1.616e-3743.03conserved unknown protein [Ectocarpus siliculosus][more]
gi|125552271|gb|EAY97980.1|5.714e-3343.72hypothetical protein OsI_19899 [Oryza sativa Indic... [more]
gi|1002267152|ref|XP_015637902.1|2.362e-3241.97PREDICTED: uncharacterized protein LOC4338730 [Ory... [more]
gi|224000848|ref|XP_002290096.1|2.558e-3140.22predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|573944040|ref|XP_006654375.1|1.260e-3039.49PREDICTED: uncharacterized protein LOC102721274 [O... [more]
gi|242061310|ref|XP_002451944.1|3.055e-3040.69uncharacterized protein LOC8059104 [Sorghum bicolo... [more]
gi|470101728|ref|XP_004287321.1|2.606e-2949.01PREDICTED: uncharacterized protein LOC101296996 [F... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8918rna8918Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications