EWM21794.1, cds8870 (CDS) Nannochloropsis gaditana

Overview
NameEWM21794.1
Unique Namecds8870
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:424418..424506 -
Alignment locationKK037250.1:423839..424307 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21794.1
Productselw selh selenoprotein
Orig transcript idgnl|cribi|Naga_100065g22.7385.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:424418..424506 -
KK037250.1supercontigKK037250.1:423839..424307 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0008430selenium binding
Vocabulary: Biological Process
TermDefinition
GO:0019725cellular homeostasis
GO:0045454cell redox homeostasis
Vocabulary: INTERPRO
TermDefinition
IPR012336Thioredoxin-like_fold
IPR011893Selenoprotein_Rdx-typ
Homology
BLAST of EWM21794.1 vs. NCBI_GenBank
Match: gi|585102130|gb|EWM21794.1| (selw selh selenoprotein [Nannochloropsis gaditana])

HSP 1 Score: 385.185 bits (988), Expect = 1.571e-135
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0
Query:    1 MAEMVLRHFSKRVVTGFFPLLIFYNLPQLSAFLTPGLSACTHFGKRPDGRGINTVLNLPLVLYSYSSTDLEQAPQQASRDRVSLSLPPDYNRVEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDKKESAF 185
            MAEMVLRHFSKRVVTGFFPLLIFYNLPQLSAFLTPGLSACTHFGKRPDGRGINTVLNLPLVLYSYSSTDLEQAPQQASRDRVSLSLPPDYNRVEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDKKESAF
Sbjct:    1 MAEMVLRHFSKRVVTGFFPLLIFYNLPQLSAFLTPGLSACTHFGKRPDGRGINTVLNLPLVLYSYSSTDLEQAPQQASRDRVSLSLPPDYNRVEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDKKESAF 185          
BLAST of EWM21794.1 vs. NCBI_GenBank
Match: gi|1175949690|gb|OQW69344.1| (selenoprotein [Proteobacteria bacterium ST_bin12])

HSP 1 Score: 136.732 bits (343), Expect = 1.109e-38
Identity = 63/91 (69.23%), Postives = 74/91 (81.32%), Query Frame = 0
Query:   93 VEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDKKES 183
            V I YCT CRW+LRAAWLAQELLTTF+DE++ V++QP     G FEV LN+  LF+RK  GRFPE KE+KQL+RDV+DP RNLGHSDKKES
Sbjct:    6 VTIEYCTQCRWLLRAAWLAQELLTTFEDELKAVSLQP--GTGGIFEVSLNDAALFNRKEYGRFPESKELKQLIRDVIDPTRNLGHSDKKES 94          
BLAST of EWM21794.1 vs. NCBI_GenBank
Match: gi|738349724|ref|WP_036302074.1| (selenoprotein [Methylotenera sp. L2L1])

HSP 1 Score: 129.798 bits (325), Expect = 8.010e-36
Identity = 60/88 (68.18%), Postives = 71/88 (80.68%), Query Frame = 0
Query:   93 VEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDK 180
            VEI+YCT CRW+LRAAWLAQELLTTF+ ++  VA++P     G FEV LN+ ++F RK  GRFPE KEIKQLVRD VDPAR+LGHSDK
Sbjct:    6 VEITYCTQCRWLLRAAWLAQELLTTFEQDLYSVALKP--GTGGVFEVTLNDELIFSRKEAGRFPEAKEIKQLVRDKVDPARHLGHSDK 91          
BLAST of EWM21794.1 vs. NCBI_GenBank
Match: gi|1180302613|ref|WP_083821416.1| (selT/selW/selH selenoprotein domain-containing protein [Methylophaga aminisulfidivorans])

HSP 1 Score: 129.413 bits (324), Expect = 1.113e-35
Identity = 57/101 (56.44%), Postives = 74/101 (73.27%), Query Frame = 0
Query:   84 LSLPPDYNRVEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDKKESA 184
            + L   +N + ISYCT CRW+LRA+W+AQELLTTF DE+  + + P     G FEVR N+ +L+ RK QGRFPE+ E+KQLVRD + P R+LGHSDKK S+
Sbjct:    1 MDLTTKHNHISISYCTQCRWLLRASWMAQELLTTFDDEITSLTLIPAT--GGLFEVRANDELLWSRKEQGRFPEITELKQLVRDTIAPDRSLGHSDKKPSS 99          
BLAST of EWM21794.1 vs. NCBI_GenBank
Match: gi|91708727|gb|ABE48655.1| (SelT/selW/selH selenoprotein [Methylobacillus flagellatus KT])

HSP 1 Score: 128.257 bits (321), Expect = 3.036e-35
Identity = 59/94 (62.77%), Postives = 73/94 (77.66%), Query Frame = 0
Query:   88 PDYNRVEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDKK 181
            P    VEI YCT CRW+LRAAW+AQELLTTF+ +++ V++ P     G FEVRL+  +LF RK QGRFPE KE+KQLVRD +DPAR+LGHSD+K
Sbjct:    4 PKLPEVEIEYCTQCRWLLRAAWMAQELLTTFESDIRCVSLVP--GTGGIFEVRLDGELLFSRKEQGRFPESKELKQLVRDRIDPARDLGHSDRK 95          
BLAST of EWM21794.1 vs. NCBI_GenBank
Match: gi|888998794|ref|WP_048811811.1| (selenoprotein [Methylobacillus flagellatus])

HSP 1 Score: 127.872 bits (320), Expect = 4.282e-35
Identity = 59/94 (62.77%), Postives = 73/94 (77.66%), Query Frame = 0
Query:   88 PDYNRVEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDKK 181
            P    VEI YCT CRW+LRAAW+AQELLTTF+ +++ V++ P     G FEVRL+  +LF RK QGRFPE KE+KQLVRD +DPAR+LGHSD+K
Sbjct:    2 PKLPEVEIEYCTQCRWLLRAAWMAQELLTTFESDIRCVSLVP--GTGGIFEVRLDGELLFSRKEQGRFPESKELKQLVRDRIDPARDLGHSDRK 93          
BLAST of EWM21794.1 vs. NCBI_GenBank
Match: gi|506311615|ref|WP_015831390.1| (hypothetical protein [Methylotenera mobilis] >gi|253982494|gb|ACT47352.1| conserved hypothetical protein [Methylotenera mobilis JLW8])

HSP 1 Score: 127.872 bits (320), Expect = 4.384e-35
Identity = 60/88 (68.18%), Postives = 71/88 (80.68%), Query Frame = 0
Query:   93 VEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDK 180
            VEI+YCT CRW+LRAAWLAQELLTTF+ ++  VA++P     G FEVRLN+ ++F RK  GRFPE KEIKQLVRD VDP R+LGHSDK
Sbjct:    6 VEITYCTQCRWLLRAAWLAQELLTTFEQDLYSVALRP--GTGGIFEVRLNDALIFSRKEAGRFPESKEIKQLVRDRVDPDRHLGHSDK 91          
BLAST of EWM21794.1 vs. NCBI_GenBank
Match: gi|521973027|ref|WP_020484298.1| (hypothetical protein [Methylomonas sp. MK1])

HSP 1 Score: 127.102 bits (318), Expect = 7.477e-35
Identity = 56/91 (61.54%), Postives = 72/91 (79.12%), Query Frame = 0
Query:   91 NRVEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDKK 181
            NRVEI YCT CRW+LRAAW+AQELL+TF+ E+ E+ +QP  D  G FEVR N  +++ RK QGRFPE+ E+KQLVRD + P R+LGH+D+K
Sbjct:    3 NRVEIRYCTQCRWLLRAAWMAQELLSTFEQEMDELVLQP--DTGGIFEVRANGELVWSRKQQGRFPEINELKQLVRDQIAPERDLGHADRK 91          
BLAST of EWM21794.1 vs. NCBI_GenBank
Match: gi|697080166|ref|WP_033158228.1| (selenoprotein [Methylomonas sp. LW13])

HSP 1 Score: 127.102 bits (318), Expect = 9.224e-35
Identity = 56/91 (61.54%), Postives = 72/91 (79.12%), Query Frame = 0
Query:   91 NRVEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDKK 181
            NRVEI YCT CRW+LRAAW+AQELL+TF+ E+ E+ +QP  D  G FEVR N  +++ RK QGRFPE+ E+KQLVRD + P R+LGH+D+K
Sbjct:    2 NRVEIRYCTQCRWLLRAAWMAQELLSTFEQELDELVLQP--DTGGIFEVRANGELVWSRKQQGRFPEITELKQLVRDQIAPERDLGHADRK 90          
BLAST of EWM21794.1 vs. NCBI_GenBank
Match: gi|1085177685|gb|OGT66471.1| (selenoprotein [Gammaproteobacteria bacterium RIFCSPLOWO2_01_FULL_47_190] >gi|1085189666|gb|OGT77049.1| selenoprotein [Gammaproteobacteria bacterium RIFCSPLOWO2_12_47_11] >gi|1085191296|gb|OGT78453.1| selenoprotein [Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_47_50] >gi|1085197701|gb|OGT84021.1| selenoprotein [Gammaproteobacteria bacterium RIFCSPLOWO2_12_FULL_47_76])

HSP 1 Score: 126.331 bits (316), Expect = 1.959e-34
Identity = 58/93 (62.37%), Postives = 71/93 (76.34%), Query Frame = 0
Query:   89 DYNRVEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDKK 181
            + +RVEI YCT CR++LRA W+AQELL TF  E+ EVA+ P     G FE+RLN ++LF RKA GRFPE KEIKQLVRDV+ P ++LGHSD K
Sbjct:    6 NSHRVEIEYCTQCRFILRAGWMAQELLMTFAGELGEVALIP--GQGGIFEIRLNGKLLFSRKAAGRFPESKEIKQLVRDVIAPGKDLGHSDNK 96          
The following BLAST results are available for this feature:
BLAST of EWM21794.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102130|gb|EWM21794.1|1.571e-135100.00selw selh selenoprotein [Nannochloropsis gaditana][more]
gi|1175949690|gb|OQW69344.1|1.109e-3869.23selenoprotein [Proteobacteria bacterium ST_bin12][more]
gi|738349724|ref|WP_036302074.1|8.010e-3668.18selenoprotein [Methylotenera sp. L2L1][more]
gi|1180302613|ref|WP_083821416.1|1.113e-3556.44selT/selW/selH selenoprotein domain-containing pro... [more]
gi|91708727|gb|ABE48655.1|3.036e-3562.77SelT/selW/selH selenoprotein [Methylobacillus flag... [more]
gi|888998794|ref|WP_048811811.1|4.282e-3562.77selenoprotein [Methylobacillus flagellatus][more]
gi|506311615|ref|WP_015831390.1|4.384e-3568.18hypothetical protein [Methylotenera mobilis] >gi|2... [more]
gi|521973027|ref|WP_020484298.1|7.477e-3561.54hypothetical protein [Methylomonas sp. MK1][more]
gi|697080166|ref|WP_033158228.1|9.224e-3561.54selenoprotein [Methylomonas sp. LW13][more]
gi|1085177685|gb|OGT66471.1|1.959e-3462.37selenoprotein [Gammaproteobacteria bacterium RIFCS... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8900rna8900Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications