EWM21794.1, cds8870 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21794.1 vs. NCBI_GenBank
Match: gi|585102130|gb|EWM21794.1| (selw selh selenoprotein [Nannochloropsis gaditana]) HSP 1 Score: 385.185 bits (988), Expect = 1.571e-135 Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0 Query: 1 MAEMVLRHFSKRVVTGFFPLLIFYNLPQLSAFLTPGLSACTHFGKRPDGRGINTVLNLPLVLYSYSSTDLEQAPQQASRDRVSLSLPPDYNRVEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDKKESAF 185 MAEMVLRHFSKRVVTGFFPLLIFYNLPQLSAFLTPGLSACTHFGKRPDGRGINTVLNLPLVLYSYSSTDLEQAPQQASRDRVSLSLPPDYNRVEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDKKESAF Sbjct: 1 MAEMVLRHFSKRVVTGFFPLLIFYNLPQLSAFLTPGLSACTHFGKRPDGRGINTVLNLPLVLYSYSSTDLEQAPQQASRDRVSLSLPPDYNRVEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDKKESAF 185
BLAST of EWM21794.1 vs. NCBI_GenBank
Match: gi|1175949690|gb|OQW69344.1| (selenoprotein [Proteobacteria bacterium ST_bin12]) HSP 1 Score: 136.732 bits (343), Expect = 1.109e-38 Identity = 63/91 (69.23%), Postives = 74/91 (81.32%), Query Frame = 0 Query: 93 VEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDKKES 183 V I YCT CRW+LRAAWLAQELLTTF+DE++ V++QP G FEV LN+ LF+RK GRFPE KE+KQL+RDV+DP RNLGHSDKKES Sbjct: 6 VTIEYCTQCRWLLRAAWLAQELLTTFEDELKAVSLQP--GTGGIFEVSLNDAALFNRKEYGRFPESKELKQLIRDVIDPTRNLGHSDKKES 94
BLAST of EWM21794.1 vs. NCBI_GenBank
Match: gi|738349724|ref|WP_036302074.1| (selenoprotein [Methylotenera sp. L2L1]) HSP 1 Score: 129.798 bits (325), Expect = 8.010e-36 Identity = 60/88 (68.18%), Postives = 71/88 (80.68%), Query Frame = 0 Query: 93 VEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDK 180 VEI+YCT CRW+LRAAWLAQELLTTF+ ++ VA++P G FEV LN+ ++F RK GRFPE KEIKQLVRD VDPAR+LGHSDK Sbjct: 6 VEITYCTQCRWLLRAAWLAQELLTTFEQDLYSVALKP--GTGGVFEVTLNDELIFSRKEAGRFPEAKEIKQLVRDKVDPARHLGHSDK 91
BLAST of EWM21794.1 vs. NCBI_GenBank
Match: gi|1180302613|ref|WP_083821416.1| (selT/selW/selH selenoprotein domain-containing protein [Methylophaga aminisulfidivorans]) HSP 1 Score: 129.413 bits (324), Expect = 1.113e-35 Identity = 57/101 (56.44%), Postives = 74/101 (73.27%), Query Frame = 0 Query: 84 LSLPPDYNRVEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDKKESA 184 + L +N + ISYCT CRW+LRA+W+AQELLTTF DE+ + + P G FEVR N+ +L+ RK QGRFPE+ E+KQLVRD + P R+LGHSDKK S+ Sbjct: 1 MDLTTKHNHISISYCTQCRWLLRASWMAQELLTTFDDEITSLTLIPAT--GGLFEVRANDELLWSRKEQGRFPEITELKQLVRDTIAPDRSLGHSDKKPSS 99
BLAST of EWM21794.1 vs. NCBI_GenBank
Match: gi|91708727|gb|ABE48655.1| (SelT/selW/selH selenoprotein [Methylobacillus flagellatus KT]) HSP 1 Score: 128.257 bits (321), Expect = 3.036e-35 Identity = 59/94 (62.77%), Postives = 73/94 (77.66%), Query Frame = 0 Query: 88 PDYNRVEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDKK 181 P VEI YCT CRW+LRAAW+AQELLTTF+ +++ V++ P G FEVRL+ +LF RK QGRFPE KE+KQLVRD +DPAR+LGHSD+K Sbjct: 4 PKLPEVEIEYCTQCRWLLRAAWMAQELLTTFESDIRCVSLVP--GTGGIFEVRLDGELLFSRKEQGRFPESKELKQLVRDRIDPARDLGHSDRK 95
BLAST of EWM21794.1 vs. NCBI_GenBank
Match: gi|888998794|ref|WP_048811811.1| (selenoprotein [Methylobacillus flagellatus]) HSP 1 Score: 127.872 bits (320), Expect = 4.282e-35 Identity = 59/94 (62.77%), Postives = 73/94 (77.66%), Query Frame = 0 Query: 88 PDYNRVEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDKK 181 P VEI YCT CRW+LRAAW+AQELLTTF+ +++ V++ P G FEVRL+ +LF RK QGRFPE KE+KQLVRD +DPAR+LGHSD+K Sbjct: 2 PKLPEVEIEYCTQCRWLLRAAWMAQELLTTFESDIRCVSLVP--GTGGIFEVRLDGELLFSRKEQGRFPESKELKQLVRDRIDPARDLGHSDRK 93
BLAST of EWM21794.1 vs. NCBI_GenBank
Match: gi|506311615|ref|WP_015831390.1| (hypothetical protein [Methylotenera mobilis] >gi|253982494|gb|ACT47352.1| conserved hypothetical protein [Methylotenera mobilis JLW8]) HSP 1 Score: 127.872 bits (320), Expect = 4.384e-35 Identity = 60/88 (68.18%), Postives = 71/88 (80.68%), Query Frame = 0 Query: 93 VEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDK 180 VEI+YCT CRW+LRAAWLAQELLTTF+ ++ VA++P G FEVRLN+ ++F RK GRFPE KEIKQLVRD VDP R+LGHSDK Sbjct: 6 VEITYCTQCRWLLRAAWLAQELLTTFEQDLYSVALRP--GTGGIFEVRLNDALIFSRKEAGRFPESKEIKQLVRDRVDPDRHLGHSDK 91
BLAST of EWM21794.1 vs. NCBI_GenBank
Match: gi|521973027|ref|WP_020484298.1| (hypothetical protein [Methylomonas sp. MK1]) HSP 1 Score: 127.102 bits (318), Expect = 7.477e-35 Identity = 56/91 (61.54%), Postives = 72/91 (79.12%), Query Frame = 0 Query: 91 NRVEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDKK 181 NRVEI YCT CRW+LRAAW+AQELL+TF+ E+ E+ +QP D G FEVR N +++ RK QGRFPE+ E+KQLVRD + P R+LGH+D+K Sbjct: 3 NRVEIRYCTQCRWLLRAAWMAQELLSTFEQEMDELVLQP--DTGGIFEVRANGELVWSRKQQGRFPEINELKQLVRDQIAPERDLGHADRK 91
BLAST of EWM21794.1 vs. NCBI_GenBank
Match: gi|697080166|ref|WP_033158228.1| (selenoprotein [Methylomonas sp. LW13]) HSP 1 Score: 127.102 bits (318), Expect = 9.224e-35 Identity = 56/91 (61.54%), Postives = 72/91 (79.12%), Query Frame = 0 Query: 91 NRVEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDKK 181 NRVEI YCT CRW+LRAAW+AQELL+TF+ E+ E+ +QP D G FEVR N +++ RK QGRFPE+ E+KQLVRD + P R+LGH+D+K Sbjct: 2 NRVEIRYCTQCRWLLRAAWMAQELLSTFEQELDELVLQP--DTGGIFEVRANGELVWSRKQQGRFPEITELKQLVRDQIAPERDLGHADRK 90
BLAST of EWM21794.1 vs. NCBI_GenBank
Match: gi|1085177685|gb|OGT66471.1| (selenoprotein [Gammaproteobacteria bacterium RIFCSPLOWO2_01_FULL_47_190] >gi|1085189666|gb|OGT77049.1| selenoprotein [Gammaproteobacteria bacterium RIFCSPLOWO2_12_47_11] >gi|1085191296|gb|OGT78453.1| selenoprotein [Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_47_50] >gi|1085197701|gb|OGT84021.1| selenoprotein [Gammaproteobacteria bacterium RIFCSPLOWO2_12_FULL_47_76]) HSP 1 Score: 126.331 bits (316), Expect = 1.959e-34 Identity = 58/93 (62.37%), Postives = 71/93 (76.34%), Query Frame = 0 Query: 89 DYNRVEISYCTGCRWMLRAAWLAQELLTTFQDEVQEVAIQPVKDPAGTFEVRLNNRILFDRKAQGRFPEVKEIKQLVRDVVDPARNLGHSDKK 181 + +RVEI YCT CR++LRA W+AQELL TF E+ EVA+ P G FE+RLN ++LF RKA GRFPE KEIKQLVRDV+ P ++LGHSD K Sbjct: 6 NSHRVEIEYCTQCRFILRAGWMAQELLMTFAGELGEVALIP--GQGGIFEIRLNGKLLFSRKAAGRFPESKEIKQLVRDVIAPGKDLGHSDNK 96 The following BLAST results are available for this feature:
BLAST of EWM21794.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|