EWM21830.1, cds8829 (CDS) Nannochloropsis gaditana

Overview
NameEWM21830.1
Unique Namecds8829
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:328094..329278 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21830.1
Productcyclin-like protein
Orig transcript idgnl|cribi|Naga_100051g13.8869.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:328094..329278 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR006671Cyclin_N
IPR004367Cyclin_C-dom
IPR013763Cyclin-like
Homology
BLAST of EWM21830.1 vs. NCBI_GenBank
Match: gi|585102172|gb|EWM21830.1| (cyclin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 809.675 bits (2090), Expect = 0.000e+0
Identity = 394/394 (100.00%), Postives = 394/394 (100.00%), Query Frame = 0
Query:    1 MEEISGSPDRRPTDEPVALPSSASQSSDSEVNAGLEHHLSDATSFPFSSSLSSSTLPVGIIDIDETQGSSQHPRSHLLPHQVGKASHKQSNNVIVPRSSNLALTDGTPQRLASYSRDYFAYLREREREQQDRPLPDYMSRIQGGALTQDMRALLVDWLVTVCEECELMPSTLYHCVELIDRALSKLQVPKEQLQCMGCACLFIACKFEETTVPSLEEFTYMAAESFSKKQLTDLELRVVEALSFRLSTVTAYNFLSRFTLAAGSGPRETALVYYFSELSLLHYEFLGFSPSIRAAAALYLARQTLAVSNTDSARRAAEERNIWTPTIAFYTGYSPATTLPLQECVRLLRRAHAGVEYSPYEALKLKYGAPALLHVGDIACVEEKDLGATILNLN 394
            MEEISGSPDRRPTDEPVALPSSASQSSDSEVNAGLEHHLSDATSFPFSSSLSSSTLPVGIIDIDETQGSSQHPRSHLLPHQVGKASHKQSNNVIVPRSSNLALTDGTPQRLASYSRDYFAYLREREREQQDRPLPDYMSRIQGGALTQDMRALLVDWLVTVCEECELMPSTLYHCVELIDRALSKLQVPKEQLQCMGCACLFIACKFEETTVPSLEEFTYMAAESFSKKQLTDLELRVVEALSFRLSTVTAYNFLSRFTLAAGSGPRETALVYYFSELSLLHYEFLGFSPSIRAAAALYLARQTLAVSNTDSARRAAEERNIWTPTIAFYTGYSPATTLPLQECVRLLRRAHAGVEYSPYEALKLKYGAPALLHVGDIACVEEKDLGATILNLN
Sbjct:    1 MEEISGSPDRRPTDEPVALPSSASQSSDSEVNAGLEHHLSDATSFPFSSSLSSSTLPVGIIDIDETQGSSQHPRSHLLPHQVGKASHKQSNNVIVPRSSNLALTDGTPQRLASYSRDYFAYLREREREQQDRPLPDYMSRIQGGALTQDMRALLVDWLVTVCEECELMPSTLYHCVELIDRALSKLQVPKEQLQCMGCACLFIACKFEETTVPSLEEFTYMAAESFSKKQLTDLELRVVEALSFRLSTVTAYNFLSRFTLAAGSGPRETALVYYFSELSLLHYEFLGFSPSIRAAAALYLARQTLAVSNTDSARRAAEERNIWTPTIAFYTGYSPATTLPLQECVRLLRRAHAGVEYSPYEALKLKYGAPALLHVGDIACVEEKDLGATILNLN 394          
BLAST of EWM21830.1 vs. NCBI_GenBank
Match: gi|1173934894|gb|OQR86098.1| (cyclin-like protein [Achlya hypogyna])

HSP 1 Score: 182.57 bits (462), Expect = 5.236e-50
Identity = 94/242 (38.84%), Postives = 154/242 (63.64%), Query Frame = 0
Query:  115 SRDYFAYLREREREQQDRPLPDYMSRIQGGA--LTQDMRALLVDWLVTVCEECELMPSTLYHCVELIDRALSKLQVPKEQLQCMGCACLFIACKFEETTVPSLEEFTYMAAESFSKKQLTDLELRVVEALSFRLSTVTAYNFLSRFTLAAGSGPRETALVYYFSELSLLHYEFL-GFSPSIRAAAALYLARQTLAVSNTDSARRAAEERNIWTPTIAFYTGYSPATTLPLQECVRLLRRAHA 353
            +R+  AY   R+ E++ R + +Y   IQ G+  LT  MR +L+DWLV V EE ++ P  L+  + L+DR L+ + +P+ +LQ MGCAC+  ACK+EE   P++E+F Y++  +++ +++ ++E +V+EAL FR+S+   Y+FL RF LA  +   +    +Y +EL+LL Y  +  ++PS+ AAAA+YL+R    V+N         E+N+WTPT+ +YT Y+    L   +CV+LL +AHA
Sbjct:  138 AREIDAY--HRKHEEKYRLVTNY---IQEGSRELTARMRMILMDWLVEVGEEYKISPKALHLAISLVDRCLAAMTIPRGELQLMGCACMMTACKYEEVQCPTIEDFVYISDHTYTGERMLEMESKVLEALEFRISSTHVYHFLERFVLAGCTTDVQNHFAHYITELALLDYVIVQSYAPSVIAAAAVYLSR---VVTN---------EQNVWTPTLHYYTKYNAVQVL---DCVKLLHKAHA 359          
BLAST of EWM21830.1 vs. NCBI_GenBank
Match: gi|953485872|emb|CEG50050.1| (cyclin-like protein [Plasmopara halstedii])

HSP 1 Score: 179.489 bits (454), Expect = 1.238e-47
Identity = 88/229 (38.43%), Postives = 138/229 (60.26%), Query Frame = 0
Query:  125 REREQQDRPLPDYMSRIQGGALTQDMRALLVDWLVTVCEECELMPSTLYHCVELIDRALSKLQVPKEQLQCMGCACLFIACKFEETTVPSLEEFTYMAAESFSKKQLTDLELRVVEALSFRLSTVTAYNFLSRFTLAAGSGPRETALVYYFSELSLLHYEFLGFSPSIRAAAALYLARQTLAVSNTDSARRAAEERNIWTPTIAFYTGYSPATTLPLQECVRLLRRAHA 353
            R+ E +  P  DY+  +Q   + + MR +L+DWLV VCEE EL   T +  V L+DR L K+++ ++Q Q +GCAC+ IA KFEE   P++EEF Y++ ++++  ++ ++E++V+ AL +R+++ T Y F+ R+T A  +  ++ +LV Y  + +LL    + F PSI  A+A+YLAR T  VS+             WTPT+   T Y+P   L  QECV  L R HA
Sbjct:  257 RKHEIKYLPEADYIGTVQMD-INEKMRTILIDWLVEVCEEYELDSQTFHKAVNLVDRCLKKIKINRKQFQLLGCACMMIAAKFEEVFGPNVEEFVYISDQTYTAVEMLNMEVQVLNALQYRVASTTCYGFIHRYTEAGCTTDKQRSLVLYLCDFALLFLHMVRFKPSILVASAVYLARLTTGVSDP------------WTPTLHHATKYNP---LDFQECVEELHRLHA 469          
BLAST of EWM21830.1 vs. NCBI_GenBank
Match: gi|470113056|ref|XP_004292743.1| (PREDICTED: cyclin-A3-2-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 175.252 bits (443), Expect = 1.308e-47
Identity = 98/285 (34.39%), Postives = 152/285 (53.33%), Query Frame = 0
Query:  102 ALTDGTPQRLASYSRDYFAYLREREREQQDRPLPDYMSRIQGGALTQDMRALLVDWLVTVCEECELMPSTLYHCVELIDRALSKLQVPKEQLQCMGCACLFIACKFEETTVPSLEEFTYMAAESFSKKQLTDLELRVVEALSFRLSTVTAYNFLSRFTLAAGSGPRETA------LVYYFSELSLLHYEFLGFSPSIRAAAALYLARQTLAVSNTDSARRAAEERNIWTPTIAFYTGYSPATTLPLQECVRLLRRAHAGVEYSPYEALKLKYGAPALLHVGDIAC 380
            A  D  PQ    Y+ D +AYLR  E E + RPLPDYM +IQ  ++  +MR +LVDW V V +E EL+P TL+  V  +D+ LS   VP+ +LQ +G A +FIA K+EE   P+++E + +   +F+K+Q+  +E  ++ +L F +       FL +F   A     +T       L++Y ++LSL+ Y+ + F PS+ AA+A++LAR  +  S            N W P +  YTGY  A    L+ECV ++   + G       A++ KY       V  + C
Sbjct:   78 ARDDEDPQLCGPYAADIYAYLRRMEVEPKRRPLPDYMEKIQKDSINANMRGVLVDWFVEVADEYELLPETLHLAVSYVDKYLSMNVVPRSELQLVGVASIFIASKYEEIDPPNVDELSDITENTFTKQQVIKMEANILLSLKFEMGNPNVRTFLRKFIDLAQESYYKTPSVQFEYLIHYLTDLSLVDYKLVKFLPSMIAASAVFLARVIITRSKV----------NAWCPALQEYTGYKAAD---LRECVLIIHDLYLGRRGGSLVAVREKYKQTKFKCVAKMHC 349          
BLAST of EWM21830.1 vs. NCBI_GenBank
Match: gi|1109250302|ref|XP_019199920.1| (PREDICTED: putative cyclin-A3-1 [Ipomoea nil] >gi|1109250484|ref|XP_019200013.1| PREDICTED: putative cyclin-A3-1 [Ipomoea nil])

HSP 1 Score: 174.481 bits (441), Expect = 2.686e-47
Identity = 98/270 (36.30%), Postives = 152/270 (56.30%), Query Frame = 0
Query:  108 PQRLASYSRDYFAYLREREREQQDRPLPDYMSRIQGGALTQDMRALLVDWLVTVCEECELMPSTLYHCVELIDRALSKLQVPKEQLQCMGCACLFIACKFEETTVPSLEEFTYMAAESFSKKQLTDLELRVVEALSFRLSTVTAYNFLSRFTLAAGSGPRETALV-----YYFSELSLLHYEFLGFSPSIRAAAALYLARQTLAVSNTDSARRAAEERNIWTPTIAFYTGYSPATTLPLQECVRLLRRAHAGVEYSPYEALKLKYGAPAL 372
            PQ  ++Y  D + YLR+ E +++ RPL DY+ ++Q   +T +MR +LVDWLV V EE +L+  TLY  ++ IDR LSK  +P+++LQ +G + + IA K+EE + P++E+F Y+   +++K+++  +E  V+ AL F L   T   FL +FT  A    +   L      YY +ELSLL Y  + F PS+ AAA ++L+R TL             E + W+ ++  YTGY PA    L+ECV ++             AL+ KY  P  
Sbjct:   91 PQMCSAYVSDIYEYLRQMEAQEKRRPLCDYLEKVQKD-ITANMRGILVDWLVEVAEEYKLLSDTLYLTIDYIDRFLSKNPIPRQKLQLLGVSSMLIASKYEEISPPNVEDFRYITDNTYTKQEVVKMEGDVLNALKFELGNPTIKTFLGKFTQIAQQDYKSENLQLEFLGYYLAELSLLDYSCIKFLPSMVAAAVVFLSRFTL-----------KPEVHPWSQSLQDYTGYKPAD---LKECVSVIHDLQLSRRRGSLVALREKYKQPKF 345          
BLAST of EWM21830.1 vs. NCBI_GenBank
Match: gi|1179533851|ref|XP_020688019.1| (cyclin-A3-1-like [Dendrobium catenatum])

HSP 1 Score: 170.244 bits (430), Expect = 7.752e-46
Identity = 92/269 (34.20%), Postives = 149/269 (55.39%), Query Frame = 0
Query:   99 SNLALTDGTPQRLASYSRDYFAYLREREREQQDRPLPDYMSRIQGGALTQDMRALLVDWLVTVCEECELMPSTLYHCVELIDRALSKLQVPKEQLQCMGCACLFIACKFEETTVPSLEEFTYMAAESFSKKQLTDLELRVVEALSFRLSTVTAYNFLSRFTLAAGSGPRETALVYYFSELSLLHYEFLGFSPSIRAAAALYLARQTLAVSNTDSARRAAEERNIWTPTIAFYTGYSPATTLPLQECVRLLRRAHAGVEYSPYEALKLKY 367
            SN    +  PQ    Y+ D  AYLR  E EQ+ RP+ +YM ++Q   ++ +MR +LVDWLV V EE +L+P TLY  V  +DR LS   V K++LQ +G + L IA K+EE   P++E+F  +   +++KK++ ++E  +++ L+F +   T  +FL  F  A     +   L  Y +ELSLL Y+ + F PS+ AA+ L+L R ++  +           R  W   +  +TGYS +    L++C+  L      +++S   A++ KY
Sbjct:   69 SNNDNGEDDPQLCVPYAADILAYLRFMEAEQKRRPMGNYMEKVQKNNISANMRGILVDWLVEVAEEYKLVPDTLYLAVSYVDRFLSCYTVDKQKLQLLGISSLLIASKYEEIEPPNVEDFCDITDNTYTKKEVVEMEANILKFLNFEMGNPTVKSFLRNFIKAGAEDKKSDLLANYLAELSLLDYDCIRFLPSMIAASILFLVRFSMNPN-----------RQPWNSKLQEHTGYSSSD---LKDCIFALHNMQMNLKFSSLTAIREKY 323          
BLAST of EWM21830.1 vs. NCBI_GenBank
Match: gi|1109250486|ref|XP_019200014.1| (PREDICTED: putative cyclin-A3-1 [Ipomoea nil])

HSP 1 Score: 170.244 bits (430), Expect = 1.153e-45
Identity = 100/285 (35.09%), Postives = 153/285 (53.68%), Query Frame = 0
Query:   99 SNLALTDGT------PQRLASYSRDYFAYLREREREQQDRPLPDYMSRIQGGALTQDMRALLVDWLVTVCEECELMPSTLYHCVELIDRALSKLQVPKEQLQCMGCACLFIACKFEETTVPSLEEFTYMAAESFSKKQLTDLELRVVEALSFRLSTVTAYNFLSRFTLAAGSGPRETALV-----YYFSELSLLHYEFLGFSPSIRAAAALYLARQTLAVSNTDSARRAAEERNIWTPTIAFYTGYSPATTLPLQECVRLLRRAHAGVEYSPYEALKLKYGAPAL 372
            +N+   DG       PQ  ++Y  D + YLR+ E +++ RPL DY+ ++Q   +T +MR +LVDWLV V EE +L+  TLY  ++ IDR LSK  + +++LQ +G + + IA K+EE + P++E+F Y+   +++K+++  +E  V+ AL F L   T   FL RFT  A    +   L      YY +ELSLL Y  + F PS+ AAA ++L+R TL             E + W   +  YTGY PA     +ECV ++             AL+ KY  P  
Sbjct:   76 TNVVEEDGIDSKSDDPQMCSAYVSDIYEYLRQMEAQEKRRPLCDYLEKVQKD-ITANMRGILVDWLVEVAEEYKLLSDTLYLTIDYIDRFLSKNLISRQKLQLLGVSSMLIASKYEEISPPNVEDFRYITDNTYTKQEVVKMEGDVLNALKFELGNPTIKTFLGRFTQIAQQDYKSENLQLEFLDYYLAELSLLDYSCIKFLPSMVAAAVVFLSRFTL-----------KPEVHPWNRALQDYTGYKPAD---FKECVSVIHDLQLSRRRGSLVALREKYKQPKF 345          
BLAST of EWM21830.1 vs. NCBI_GenBank
Match: gi|1175879986|ref|XP_020593600.1| (cyclin-A3-1-like [Phalaenopsis equestris])

HSP 1 Score: 169.859 bits (429), Expect = 1.195e-45
Identity = 96/280 (34.29%), Postives = 151/280 (53.93%), Query Frame = 0
Query:   99 SNLALTDGTPQRLASYSRDYFAYLREREREQQDRPLPDYMSRIQGGALTQDMRALLVDWLVTVCEECELMPSTLYHCVELIDRALSKLQVPKEQLQCMGCACLFIACKFEETTVPSLEEFTYMAAESFSKKQLTDLELRVVEALSFRLSTVTAYNFLSRFTLAAGSGPRETALVYYFSELSLLHYEFLGFSPSIRAAAALYLARQTLAVSNTDSARRAAEERNI--WTPTIAFYTGYSPATTLPLQECVRLLRRAHAGVEYSPYEALKLKYGAPALLHVG 376
            SN+A  +  PQ    Y+ D  AYLR  E E++ RP+ +YM ++Q   ++ +MR +LVDWLV V EE +L+  TLY  V  +DR LS   V K++LQ +G + + IA K+EE   P +++F Y+   +++KK+L  +E  ++++L F +   TA  FL  F  A         L  + +ELSLL Y+ + F PS+ AA+ ++LAR T+               N+  W+  +  YTGYS +    L++CV  L       ++S   A++ KY  P    V 
Sbjct:   66 SNIANEEDDPQLCLPYAADVLAYLRFLEGEERRRPMRNYMEKVQKKVISANMRGILVDWLVEVAEEYKLLSDTLYLAVSYVDRFLSCNAVDKQKLQLLGVSSVLIASKYEEIEPPKVKDFCYITDNTYTKKELVQMEANILKSLHFEMGNPTAKTFLRNFINAGVENKNSELLANFLAELSLLDYDCIRFLPSLIAASVVFLARFTM-------------NPNVHPWSSKLQQYTGYSSSD---LKDCVLALHNMQMNRKFSSLTAIREKYKQPKFKAVS 329          
BLAST of EWM21830.1 vs. NCBI_GenBank
Match: gi|657972387|ref|XP_008377992.1| (PREDICTED: cyclin-A3-2-like [Malus domestica] >gi|658043482|ref|XP_008357378.1| PREDICTED: cyclin-A3-2-like [Malus domestica])

HSP 1 Score: 169.859 bits (429), Expect = 1.384e-45
Identity = 101/281 (35.94%), Postives = 152/281 (54.09%), Query Frame = 0
Query:  108 PQRLASYSRDYFAYLREREREQQDRPLPDYMSRIQGGALTQDMRALLVDWLVTVCEECELMPSTLYHCVELIDRALSKLQVPKEQLQCMGCACLFIACKFEETTVPSLEEFTYMAAESFSKKQLTDLELRVVEALSFRLSTVTAYNFLSRFTLAAGSGPRETA-----LVYYFSELSLLHYEFLGFSPSIRAAAALYLARQTLAVSNTDSARRAAEERNIWTPTIAFYTGYSPATTLPLQECVRLLRRAHAGVEYSPYEALKLKYGAPALLHVGDIACVEE 383
            PQ    Y+ D +AYLR  E E + RP+PDYM ++Q  A   +MRA+LVDWLV V EE +L+P TLY  +  IDR LS   V K++LQ +G + +FIA K+EE   P+++E   +   ++ K+++  +E  ++++L F +   T   FL +FT  A    +        LV Y +ELSLL Y+ + F PS+ AA+A++LAR    ++ T +        + W P +  YTGY  A    L+ECV  +     G        ++ KY  P    V  I C +E
Sbjct:   85 PQLCGPYASDIYAYLRRMEAEPRRRPMPDYMEKVQKDA-NANMRAVLVDWLVEVSEEYKLLPETLYLSISHIDRFLSMNVVHKQKLQLLGVSSIFIASKYEEIDPPNVDELCDITENTYKKEEVIKMEADILKSLKFEMGNPTTRTFLRKFTDVAQXSYKTPIVQLEFLVAYLAELSLLDYKLVKFLPSLVAASAVFLAR---FMTQTKT--------HPWCPELQQYTGYKAAD---LKECVLAIHDMCLGRRARNLNVIQEKYKQPKFKQVAHIPCPQE 350          
BLAST of EWM21830.1 vs. NCBI_GenBank
Match: gi|1098826843|ref|XP_018819830.1| (PREDICTED: putative cyclin-A3-1 [Juglans regia])

HSP 1 Score: 169.474 bits (428), Expect = 2.496e-45
Identity = 95/276 (34.42%), Postives = 150/276 (54.35%), Query Frame = 0
Query:  108 PQRLASYSRDYFAYLREREREQQDRPLPDYMSRIQGGALTQDMRALLVDWLVTVCEECELMPSTLYHCVELIDRALSKLQVPKEQLQCMGCACLFIACKFEETTVPSLEEFTYMAAESFSKKQLTDLELRVVEALSFRLSTVTAYNFLSRFTLAAGS-----GPRETALVYYFSELSLLHYEFLGFSPSIRAAAALYLARQTLAVSNTDSARRAAEERNIWTPTIAFYTGYSPATTLPLQECVRLLRRAHAGVEYSPYEALKLKYGAPALLHVGDI 378
            PQ   +Y+ D + YLR+ E E + RPLP+Y+  +Q   +T +MR +LVDWLV V EE +L+P TLY  +  IDR LS   + +++LQ +G + + IA K+EE T P ++EF  +   +FSK ++  +E  +++ L F +   T   FL  F   A         +   L YY +ELSLL Y  + FSPS+ AA+ +++AR  +             + + W+P +  YTGY P     L+EC+ L+R  H   +    +A++ KY      +VG +
Sbjct:   94 PQLCVAYASDIYEYLRQMEMESKRRPLPNYLEEVQKD-VTANMRGILVDWLVDVAEEYKLLPDTLYLSISYIDRFLSLNVLNRQKLQLLGVSSMLIASKYEEITPPKVDEFCSITDNTFSKAEVVKMEADILKLLMFEMGNPTIKTFLRIFNSVAQEYYKTPNSKLEFLGYYLAELSLLDYNCVKFSPSLVAASVIFIARFII-----------QPKMHPWSPKLQEYTGYKPVD---LKECIHLIRDLHLRKKGGSLQAIRDKYKQHKFKYVGSL 354          
The following BLAST results are available for this feature:
BLAST of EWM21830.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102172|gb|EWM21830.1|0.000e+0100.00cyclin-like protein [Nannochloropsis gaditana][more]
gi|1173934894|gb|OQR86098.1|5.236e-5038.84cyclin-like protein [Achlya hypogyna][more]
gi|953485872|emb|CEG50050.1|1.238e-4738.43cyclin-like protein [Plasmopara halstedii][more]
gi|470113056|ref|XP_004292743.1|1.308e-4734.39PREDICTED: cyclin-A3-2-like [Fragaria vesca subsp.... [more]
gi|1109250302|ref|XP_019199920.1|2.686e-4736.30PREDICTED: putative cyclin-A3-1 [Ipomoea nil] >gi|... [more]
gi|1179533851|ref|XP_020688019.1|7.752e-4634.20cyclin-A3-1-like [Dendrobium catenatum][more]
gi|1109250486|ref|XP_019200014.1|1.153e-4535.09PREDICTED: putative cyclin-A3-1 [Ipomoea nil][more]
gi|1175879986|ref|XP_020593600.1|1.195e-4534.29cyclin-A3-1-like [Phalaenopsis equestris][more]
gi|657972387|ref|XP_008377992.1|1.384e-4535.94PREDICTED: cyclin-A3-2-like [Malus domestica] >gi|... [more]
gi|1098826843|ref|XP_018819830.1|2.496e-4534.42PREDICTED: putative cyclin-A3-1 [Juglans regia][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8859rna8859Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications