EWM21846.1, cds8827 (CDS) Nannochloropsis gaditana

Overview
NameEWM21846.1
Unique Namecds8827
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:323906..324730 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21846.1
Productsnf7 family protein
Orig transcript idgnl|cribi|Naga_100051g11.8885.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:323906..324730 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0007034vacuolar transport
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Homology
BLAST of EWM21846.1 vs. NCBI_GenBank
Match: gi|585102188|gb|EWM21846.1| (snf7 family protein [Nannochloropsis gaditana])

HSP 1 Score: 552.362 bits (1422), Expect = 0.000e+0
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0
Query:    1 MGGLFSRHGRHHGGKSPKKPVQITDHDRAVLDLKVAKDRLKRYQMKMHSEKMRLTEKAKELVTAGRKDRALLVLKMRRLREDEQAKAAGQLLNVEQLITQIEWEREQLQVFDALKSGNQALEAIHKIVSLEEVDKLMADTADSIAYEQEISRLLSNNLSAGAEEEVLREFDELQALIEAPEHTPVEAAPGAPTVVSADMASKDASEQAEITEATEAGSSLPDLPEVPKHEILTKTNVDVRRDKISKETTSGNARGAGTEEVHVQEKKAKVAVSG 274
            MGGLFSRHGRHHGGKSPKKPVQITDHDRAVLDLKVAKDRLKRYQMKMHSEKMRLTEKAKELVTAGRKDRALLVLKMRRLREDEQAKAAGQLLNVEQLITQIEWEREQLQVFDALKSGNQALEAIHKIVSLEEVDKLMADTADSIAYEQEISRLLSNNLSAGAEEEVLREFDELQALIEAPEHTPVEAAPGAPTVVSADMASKDASEQAEITEATEAGSSLPDLPEVPKHEILTKTNVDVRRDKISKETTSGNARGAGTEEVHVQEKKAKVAVSG
Sbjct:    1 MGGLFSRHGRHHGGKSPKKPVQITDHDRAVLDLKVAKDRLKRYQMKMHSEKMRLTEKAKELVTAGRKDRALLVLKMRRLREDEQAKAAGQLLNVEQLITQIEWEREQLQVFDALKSGNQALEAIHKIVSLEEVDKLMADTADSIAYEQEISRLLSNNLSAGAEEEVLREFDELQALIEAPEHTPVEAAPGAPTVVSADMASKDASEQAEITEATEAGSSLPDLPEVPKHEILTKTNVDVRRDKISKETTSGNARGAGTEEVHVQEKKAKVAVSG 274          
BLAST of EWM21846.1 vs. NCBI_GenBank
Match: gi|298711299|emb|CBJ26544.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 142.124 bits (357), Expect = 1.811e-37
Identity = 91/201 (45.27%), Postives = 130/201 (64.68%), Query Frame = 0
Query:    1 MGGLFSRHGRHHGGKSPKKPVQITDHDRAVLDLKVAKDRLKRYQMKMHSEKMRLTEKAKELVTAGRKDRALLVLKMRRLREDEQAKAAGQLLNVEQLITQIEWEREQLQVFDALKSGNQALEAIHKIVSLEEVDKLMADTADSIAYEQEISRLLSNNLSAGAEEEVLREFDELQALIEAPEHTPV---EAAPG-APTVVSA 197
            MG L SR  +            +TD DRAVLDLK ++DRL RYQ K+  E  +L  +A  +V   RKDRALL+LK+++L++D+  KA+ QLL+V Q++  I+WE +QLQVF+ALK GN AL  +H+ + L++V++LMADTA+SIA E+EIS+ +  + +   EE++L E  EL++   APE  P    E  P  AP  V A
Sbjct:    1 MGNLMSRKKKRERD-------HVTDQDRAVLDLKNSRDRLTRYQKKLDLECAKLQAQAAAMVKEKRKDRALLLLKIKKLKQDQADKASSQLLSVHQMMDTIDWETQQLQVFNALKEGNVALNKLHEEMPLDKVEELMADTAESIAMEEEISKAIGGSWTDANEEDLLAELAELESEA-APEPVPATVPEPVPATAPEPVPA 193          
BLAST of EWM21846.1 vs. NCBI_GenBank
Match: gi|857971759|emb|CEP02253.1| (hypothetical protein PBRA_002518 [Plasmodiophora brassicae])

HSP 1 Score: 137.502 bits (345), Expect = 4.142e-36
Identity = 72/174 (41.38%), Postives = 117/174 (67.24%), Query Frame = 0
Query:    1 MGGLFSRHGRHHGGKSPKKPVQITDHDRAVLDLKVAKDRLKRYQMKMHSEKMRLTEKAKELVTAGRKDRALLVLKMRRLREDEQAKAAGQLLNVEQLITQIEWEREQLQVFDALKSGNQALEAIHKIVSLEEVDKLMADTADSIAYEQEISRLLSNNLSAGAEEEVLREFDELQ 174
            MGG+F++         PK    I+D D+AV DLKV +DRLK++ +K  +  +R TE A+ELV A +K++A LVL+ +RL E    K+  ++ N+E+L+  I++     QVF ALK GN+AL++I+  + +++VDKLM DTA+++AY+++IS +LS  ++A  +E  LRE D ++
Sbjct:    1 MGGIFTKKAARRPAPPPK--AAISDRDKAVYDLKVQRDRLKKFIVKNDALVVRETEVARELVKAKQKEKAKLVLRKKRLHESMIEKSMAKMANIEELVNSIQFAEITAQVFAALKEGNEALQSINAQMDIDDVDKLMEDTAEAVAYQEQISEMLSGQMTAQDDEAALRELDMIE 172          
BLAST of EWM21846.1 vs. NCBI_GenBank
Match: gi|470373698|ref|XP_004333037.1| (charged multivesicular body protein, putative [Acanthamoeba castellanii str. Neff] >gi|440789725|gb|ELR11024.1| charged multivesicular body protein, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 136.346 bits (342), Expect = 8.738e-36
Identity = 83/203 (40.89%), Postives = 125/203 (61.58%), Query Frame = 0
Query:    1 MGGLFSRHGRHHGGKSPKKPVQITDHDRAVLDLKVAKDRLKRYQMKMHSEKMRLTEKAKELVTAGRKDRALLVLKMRRLREDEQAKAAGQLLNVEQLITQIEWEREQLQVFDALKSGNQALEAIHKIVSLEEVDKLMADTADSIAYEQEISRLLSNNLSAGAEEEVLREFDEL--QALIEAPEHTPVEAAPGAPTVVSADMAS 201
            MGGLFS         + KK  +++ HD+AVLDLKV +D+L +YQ KM +   + TE A+EL+  G++ +ALL LK +R +E   AK+  QL N++++I  +E+ + + +VFD LK+GN+ L+ I   +SL  V++LMADT ++IA++QEI  +L+  L+   EE +L E DEL  QA  E     P E   G PT      A+
Sbjct:    1 MGGLFS-------SSATKKAPRVSSHDKAVLDLKVQRDKLTQYQKKMRAVVEKETEMARELLRKGQRPKALLALKKKRFQEQLLAKSEAQLSNLQEMIDSVEFAQMEKRVFDGLKAGNEVLKEIQAEMSLNAVEELMADTQEAIAHQQEIENILAGKLTDEDEEAILAELDELVQQAEQEGVPQMP-EVPAGEPTATDPQKAT 195          
BLAST of EWM21846.1 vs. NCBI_GenBank
Match: gi|669165740|ref|XP_008618432.1| (hypothetical protein SDRG_14103 [Saprolegnia diclina VS20] >gi|530729904|gb|EQC28146.1| hypothetical protein SDRG_14103 [Saprolegnia diclina VS20])

HSP 1 Score: 134.806 bits (338), Expect = 5.966e-35
Identity = 71/175 (40.57%), Postives = 109/175 (62.29%), Query Frame = 0
Query:    1 MGGLFSRHGR---------HHGGKSPKKPVQITDHDRAVLDLKVAKDRLKRYQMKMHSEKMRLTEKAKELVTAGRKDRALLVLKMRRLREDEQAKAAGQLLNVEQLITQIEWEREQLQVFDALKSGNQALEAIHKIVSLEEVDKLMADTADSIAYEQEISRLLSNNLSAGAEEEV 166
            MGG+FS+             H     K   Q++  D+A+L+LK ++DRLK+YQ  + +E   L  KA++L+   +KDRA+L LKMR+ +  +  +A   LLNV Q+I  +EWE +QLQ+F+ LK+GN  L+AIHK +++E V+ LM +T ++ A+  EISR+L   LS   E+ V
Sbjct:    1 MGGVFSKKTPAPATNAAAERHAANRAKAQQQVSSKDKAMLELKASRDRLKKYQKALEAESATLESKARQLLAKKQKDRAMLCLKMRKFKLQQIEQADTHLLNVHQMIGSVEWESQQLQIFEGLKAGNSVLDAIHKEMTIEAVEDLMLETQEAQAHADEISRILGGALSTQDEDAV 175          
BLAST of EWM21846.1 vs. NCBI_GenBank
Match: gi|358054374|dbj|GAA99300.1| (hypothetical protein E5Q_05995 [Mixia osmundae IAM 14324])

HSP 1 Score: 133.265 bits (334), Expect = 1.268e-34
Identity = 83/198 (41.92%), Postives = 119/198 (60.10%), Query Frame = 0
Query:   21 VQITDHDRAVLDLKVAKDRLKRYQMKMHSEKMRLTEKAKELVTAGRKDRALLVLKMRRLREDEQAKAAGQLLNVEQLITQIEWEREQLQVFDALKSGNQALEAIHKIVSLEEVDKLMADTADSIAYEQEISRLLSNNLSAGAEEEVLREFDELQ---------ALIEAPE---HTPVEAAPGAPTVVSADMASKDASE 206
            V+IT  DRA+LDLK+ +D+LKRYQ+K+ S   R  E A+E +  G K RALL L+ R+ +E    K   QL  ++QL++ IE+   +  V   L+ GN  L+ IHK +++E V+KLM +TAD+IAY+ EI  +LS+ +SA  EE V  E   LQ         AL  AP+     P+E  PG PT V A++  + A+E
Sbjct:    8 VKITPQDRAILDLKLQRDKLKRYQVKIESILQREKEIAREALQNGNKSRALLALRRRKYQEGLLGKTDEQLSTLQQLVSSIEYSLIEKSVLFGLEQGNAVLKEIHKEMNIESVEKLMGETADAIAYQNEIDEMLSSTMSAADEEAVQAELAALQAEQIGQAAPALPSAPQGELRRPIE-LPGVPTAVPAEVQEQPANE 204          
BLAST of EWM21846.1 vs. NCBI_GenBank
Match: gi|919031159|ref|XP_013399205.1| (PREDICTED: charged multivesicular body protein 6-B-like [Lingula anatina])

HSP 1 Score: 132.109 bits (331), Expect = 3.158e-34
Identity = 78/204 (38.24%), Postives = 125/204 (61.27%), Query Frame = 0
Query:    1 MGGLFSRHGRHHGGKSPKKPVQITDHDRAVLDLKVAKDRLKRYQMKMHSEKMRLTEKAKELVTAGRKDRALLVLKMRRLREDEQAKAAGQLLNVEQLITQIEWEREQLQVFDALKSGNQALEAIHKIVSLEEVDKLMADTADSIAYEQEISRLLSNNLSAGAEEEVLREFDELQALIEAPEHTPVEAAPGAPTVVSADMASKDA 204
            MGGLFS        KS KK  ++T+ D+AVL LK  +D+LK+YQ K+  +  +    AK+L+  G+K+RA L+L+ +R +E    K   QL N+++++  IE+ + + QV D LK GN +L+ +H+I+S+E V+K+M +T +++ Y+QEI  LL+  LS   E++VL E +E+    E+    P E  P  P V  AD+  + A
Sbjct:    1 MGGLFS--------KSKKKESRVTEQDKAVLQLKQQRDKLKQYQKKITVQLEKDRNVAKQLLKDGKKERAKLLLRKKRFQEGLIEKTDNQLDNIDKMVHDIEFAQIETQVIDGLKQGNDSLKKLHEILSIENVEKIMEETQEAVQYQQEIDDLLAGGLSQEDEDDVLAELEEITK--ESLPEVPQEEVPAMPEVPKADIEEEKA 194          
BLAST of EWM21846.1 vs. NCBI_GenBank
Match: gi|813127202|ref|XP_012197271.1| (hypothetical protein SPRG_03304 [Saprolegnia parasitica CBS 223.65] >gi|641538250|gb|KDO32084.1| hypothetical protein SPRG_03304 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 132.109 bits (331), Expect = 5.868e-34
Identity = 83/207 (40.10%), Postives = 123/207 (59.42%), Query Frame = 0
Query:    1 MGGLFSRHG--------RHHGGKSPKKPVQITDHDRAVLDLKVAKDRLKRYQMKMHSEKMRLTEKAKELVTAGRKDRALLVLKMRRLREDEQAKAAGQLLNVEQLITQIEWEREQLQVFDALKSGNQALEAIHKIVSLEEVDKLMADTADSIAYEQEISRLLSNNLSAGAEEEVLREFDELQA------LIEAPEHTPVEAAPGAPT 193
            MGG+FS+            H     K   Q++  D+A+L+LK ++DRLK+YQ  +  E   L  KA++L+   +KDRA+L LKMR+ +  +  +A   LLNV Q+I  +EWE +QLQ+F+ LK+GN  L+AIHK +++E V+ LM +T ++ A+  EISR+L   LS   E+ VL E  E++A      L  AP+   V   P APT
Sbjct:    1 MGGVFSKKTPAPANAAAERHAANRAKAQQQVSSKDKAMLELKASRDRLKKYQKALEVESATLESKARQLLAKKQKDRAMLCLKMRKFKLQQIEQADTHLLNVHQMIGSVEWESQQLQIFEGLKAGNSVLDAIHKEMTIEAVEDLMLETQEAQAHADEISRILGGALSTQDEDAVLAELAEIEAAAFEAQLPIAPDDVLVAPLPEAPT 207          
BLAST of EWM21846.1 vs. NCBI_GenBank
Match: gi|953449983|ref|XP_014568544.1| (hypothetical protein L969DRAFT_86532 [Mixia osmundae IAM 14324] >gi|658165220|gb|KEI39932.1| hypothetical protein L969DRAFT_86532 [Mixia osmundae IAM 14324])

HSP 1 Score: 131.339 bits (329), Expect = 6.832e-34
Identity = 81/191 (42.41%), Postives = 115/191 (60.21%), Query Frame = 0
Query:   21 VQITDHDRAVLDLKVAKDRLKRYQMKMHSEKMRLTEKAKELVTAGRKDRALLVLKMRRLREDEQAKAAGQLLNVEQLITQIEWEREQLQVFDALKSGNQALEAIHKIVSLEEVDKLMADTADSIAYEQEISRLLSNNLSAGAEEEVLREFDELQ---------ALIEAPE---HTPVEAAPGAPTVVSADM 199
            V+IT  DRA+LDLK+ +D+LKRYQ+K+ S   R  E A+E +  G K RALL L+ R+ +E    K   QL  ++QL++ IE+   +  V   L+ GN  L+ IHK +++E V+KLM +TAD+IAY+ EI  +LS+ +SA  EE V  E   LQ         AL  AP+     P+E  PG PT V A++
Sbjct:    8 VKITPQDRAILDLKLQRDKLKRYQVKIESILQREKEIAREALQNGNKSRALLALRRRKYQEGLLGKTDEQLSTLQQLVSSIEYSLIEKSVLFGLEQGNAVLKEIHKEMNIESVEKLMGETADAIAYQNEIDEMLSSTMSAADEEAVQAELAALQAEQIGQAAPALPSAPQGELRRPIE-LPGVPTAVPAEV 197          
BLAST of EWM21846.1 vs. NCBI_GenBank
Match: gi|1207943712|ref|XP_021361621.1| (charged multivesicular body protein 6-A-like [Mizuhopecten yessoensis] >gi|1207943714|ref|XP_021361622.1| charged multivesicular body protein 6-A-like [Mizuhopecten yessoensis] >gi|1205896881|gb|OWF46476.1| Charged multivesicular body protein 6 [Mizuhopecten yessoensis])

HSP 1 Score: 127.872 bits (320), Expect = 1.502e-32
Identity = 69/177 (38.98%), Postives = 116/177 (65.54%), Query Frame = 0
Query:   13 GGKSPKKPVQITDHDRAVLDLKVAKDRLKRYQMKMHSEKMRLTEKAKELVTAGRKDRALLVLKMRRLREDEQAKAAGQLLNVEQLITQIEWEREQLQVFDALKSGNQALEAIHKIVSLEEVDKLMADTADSIAYEQEISRLLSNNLSAGAEEEVLREFDELQALIEAPEHTPVEAAP 189
              K  K+P ++T+ D+AVL LK  +D+L++YQ K+H +  +  + AK+L+  G+K +A L+L+ +R +E    K  GQL N+EQ++  +E+ + + +VF+ LK GN++L+ +H+I+S+E+V+KLM +T +SI Y++EI  LL+  L+   EE+VL E DEL     A    P +  P
Sbjct:    5 SSKPKKQPSRVTEQDKAVLQLKQQRDKLRQYQKKIHVQIEKDRQVAKQLLHDGKKSKAKLMLRKKRFQESLIEKTDGQLENIEQMVHDLEFSQIEAKVFEGLKKGNESLKKLHEIMSIEDVEKLMDETQESIEYQKEIDDLLAGGLTEDDEEDVLAELDELTKQDMALPDVPTDELP 181          
The following BLAST results are available for this feature:
BLAST of EWM21846.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102188|gb|EWM21846.1|0.000e+0100.00snf7 family protein [Nannochloropsis gaditana][more]
gi|298711299|emb|CBJ26544.1|1.811e-3745.27conserved unknown protein [Ectocarpus siliculosus][more]
gi|857971759|emb|CEP02253.1|4.142e-3641.38hypothetical protein PBRA_002518 [Plasmodiophora b... [more]
gi|470373698|ref|XP_004333037.1|8.738e-3640.89charged multivesicular body protein, putative [Aca... [more]
gi|669165740|ref|XP_008618432.1|5.966e-3540.57hypothetical protein SDRG_14103 [Saprolegnia dicli... [more]
gi|358054374|dbj|GAA99300.1|1.268e-3441.92hypothetical protein E5Q_05995 [Mixia osmundae IAM... [more]
gi|919031159|ref|XP_013399205.1|3.158e-3438.24PREDICTED: charged multivesicular body protein 6-B... [more]
gi|813127202|ref|XP_012197271.1|5.868e-3440.10hypothetical protein SPRG_03304 [Saprolegnia paras... [more]
gi|953449983|ref|XP_014568544.1|6.832e-3442.41hypothetical protein L969DRAFT_86532 [Mixia osmund... [more]
gi|1207943712|ref|XP_021361621.1|1.502e-3238.98charged multivesicular body protein 6-A-like [Mizu... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8857rna8857Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications