EWM21883.1, cds8793 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM21883.1
Unique Name	cds8793
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037250.1:251691..251779 -
Alignment location	KK037250.1:251356..251596 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM21883.1
Product	Uncharacterized protein family UPF0139
Orig transcript id	gnl\|cribi\|Naga_100159g8.6561.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:251691..251779 -
KK037250.1	supercontig	KK037250.1:251356..251596 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR005351	UPF0139

Homology

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BLAST of EWM21883.1 vs. NCBI_GenBank
Match: gi|585102227|gb|EWM21883.1| (Uncharacterized protein family UPF0139 [Nannochloropsis gaditana])

HSP 1 Score: 224.942 bits (572), Expect = 1.235e-74
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0

Query:    1 MQQATIAPKPQQRTHDPRRSKHIFPYLSLRARDSVEEPYRYDSIGVLSLFLAVLCILTRLRICAWLSLFMLCSAAANVRYSSFDGRTLFGACIAMLFAFYTVYIKSFLE 109
            MQQATIAPKPQQRTHDPRRSKHIFPYLSLRARDSVEEPYRYDSIGVLSLFLAVLCILTRLRICAWLSLFMLCSAAANVRYSSFDGRTLFGACIAMLFAFYTVYIKSFLE
Sbjct:    1 MQQATIAPKPQQRTHDPRRSKHIFPYLSLRARDSVEEPYRYDSIGVLSLFLAVLCILTRLRICAWLSLFMLCSAAANVRYSSFDGRTLFGACIAMLFAFYTVYIKSFLE 109

The following BLAST results are available for this feature:

BLAST of EWM21883.1 vs. NCBI_GenBank

BLAST of EWM21883.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585102227\|gb\|EWM21883.1\|	1.235e-74	100.00	Uncharacterized protein family UPF0139 [Nannochlor...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna8823	rna8823	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications