EWM29804.1, cds879 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29804.1 vs. NCBI_GenBank
Match: gi|585112385|gb|EWM29804.1| (gualynate kinase-1 [Nannochloropsis gaditana]) HSP 1 Score: 684.1 bits (1764), Expect = 0.000e+0 Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 0
Query: 1 MHFISLCSYRQVAAGGRMGYSSLSFFPVAYVERHRRPAPFRVLYTACLIVLKAYHTSALNNFSASNPPFSSGFACLSSSSKDVSPSSPPRLTRRNFMTHGGSGSEHGTASSSMASSASSSSLDQPVDRMAVRRPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYIETMYYGDEEVQSSS 334
MHFISLCSYRQVAAGGRMGYSSLSFFPVAYVERHRRPAPFRVLYTACLIVLKAYHTSALNNFSASNPPFSSGFACLSSSSKDVSPSSPPRLTRRNFMTHGGSGSEHGTASSSMASSASSSSLDQPVDRMAVRRPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYIETMYYGDEEVQSSS
Sbjct: 1 MHFISLCSYRQVAAGGRMGYSSLSFFPVAYVERHRRPAPFRVLYTACLIVLKAYHTSALNNFSASNPPFSSGFACLSSSSKDVSPSSPPRLTRRNFMTHGGSGSEHGTASSSMASSASSSSLDQPVDRMAVRRPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYIETMYYGDEEVQSSS 334
BLAST of EWM29804.1 vs. NCBI_GenBank
Match: gi|553195656|ref|XP_005856179.1| (guanylate kinase, partial [Nannochloropsis gaditana CCMP526] >gi|422292882|gb|EKU20183.1| guanylate kinase, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 667.152 bits (1720), Expect = 0.000e+0 Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0
Query: 9 YRQVAAGGRMGYSSLSFFPVAYVERHRRPAPFRVLYTACLIVLKAYHTSALNNFSASNPPFSSGFACLSSSSKDVSPSSPPRLTRRNFMTHGGSGSEHGTASSSMASSASSSSLDQPVDRMAVRRPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYIETMYYGDEEVQSSS 334
YRQVAAGGRMGYSSLSFFPVAYVERHRRPAPFRVLYTACLIVLKAYHTSALNNFSASNPPFSSGFACLSSSSKDVSPSSPPRLTRRNFMTHGGSGSEHGTASSSMASSASSSSLDQPVDRMAVRRPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYIETMYYGDEEVQSSS
Sbjct: 1 YRQVAAGGRMGYSSLSFFPVAYVERHRRPAPFRVLYTACLIVLKAYHTSALNNFSASNPPFSSGFACLSSSSKDVSPSSPPRLTRRNFMTHGGSGSEHGTASSSMASSASSSSLDQPVDRMAVRRPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYIETMYYGDEEVQSSS 326
BLAST of EWM29804.1 vs. NCBI_GenBank
Match: gi|299115624|emb|CBN75825.1| (Guanylate kinase (IC) [Ectocarpus siliculosus]) HSP 1 Score: 233.417 bits (594), Expect = 4.715e-72 Identity = 115/192 (59.90%), Postives = 140/192 (72.92%), Query Frame = 0
Query: 133 RPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYIETMY 324
+PL+I GPSGVGKGTLI L ++P RFGFS SHTTR PRPGE +G Y+F+ + +QAEID+ KF+EHA VH NLYGTS A+Q V GKICILDIDVQGV SV+GA RG L P Y+FIS PS+ VLE+RLRGR TE EE + RRL NA E+EYG+ NF+KVVVN L++AY +L+ + Y
Sbjct: 67 KPLVICGPSGVGKGTLINMLREDFPGRFGFSVSHTTRKPRPGEVDGTHYYFSDKREMQAEIDDNKFIEHANVHANLYGTSIAAVQTVTASGKICILDIDVQGVKSVRGA-GRGVLD---PHYLFISAPSMEVLEARLRGRGTETEEALQRRLANANAEMEYGLEADNFEKVVVNDGLEEAYAELKETAKAWY 254
BLAST of EWM29804.1 vs. NCBI_GenBank
Match: gi|223997310|ref|XP_002288328.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975436|gb|EED93764.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 225.713 bits (574), Expect = 2.650e-69 Identity = 113/210 (53.81%), Postives = 147/210 (70.00%), Query Frame = 0
Query: 115 SSASSSSLDQPVDRMAVRRPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYIETMY 324
+ ++S+S DQP RP++I GPSGVGKGTLI L +YP FGFS SHTTR PR GE++GV Y FTT E ++ EIDEGKF+E+A VH N YGTS +A++ VQ++GKICILDIDVQGV +VK + L +YVF++PPS+ LE RLRGR TE EE VL+RL NAK E+++G+ GNFD+V N DLD + + ++ Y
Sbjct: 44 TKSASTSTDQP-------RPVVIAGPSGVGKGTLIELLRKKYPTEFGFSVSHTTRKPREGEQDGVHYNFTTVETIKGEIDEGKFVEYANVHGNYYGTSVQAVESVQKQGKICILDIDVQGVRNVKKSA-------LDAIYVFVAPPSMDELEKRLRGRGTETEEAVLKRLGNAKVELDFGLGEGNFDRVFTNDDLDKTFEAMVEQFKSWY 239
BLAST of EWM29804.1 vs. NCBI_GenBank
Match: gi|290998583|ref|XP_002681860.1| (guanylate kinase [Naegleria gruberi] >gi|284095485|gb|EFC49116.1| guanylate kinase [Naegleria gruberi]) HSP 1 Score: 223.402 bits (568), Expect = 4.753e-69 Identity = 107/195 (54.87%), Postives = 140/195 (71.79%), Query Frame = 0
Query: 129 MAVRRPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGN--FDKVVVNADLDDAYIDLRTYIE 321
+ + RP++I GPSGVGKGTLI++L EYP FGFS SHTTRGPRPGE+ GV Y+F+T+E +Q EIDEGKF+EHA VH NLYGTSF+A+++VQ +GK C+LDID+QG V+ +L PL +F+ PPS+ +LE RLRGR TE EE + RLKNA++E+E FD V N DLD++Y L+ I+
Sbjct: 9 LQLFRPIVICGPSGVGKGTLIQKLFKEYPNIFGFSVSHTTRGPRPGEENGVHYYFSTKEIMQKEIDEGKFIEHANVHGNLYGTSFQAVKEVQTKGKCCVLDIDIQGARQVRNN------KELNPLVLFVKPPSMDILEQRLRGRATETEESIQLRLKNARKELEEFEQDNTNLFDDSVENNDLDESYASLKLTIK 197
BLAST of EWM29804.1 vs. NCBI_GenBank
Match: gi|829488467|gb|AKL71449.1| (Anc-gkdup Bayes5, partial [synthetic construct]) HSP 1 Score: 222.246 bits (565), Expect = 8.237e-69 Identity = 107/188 (56.91%), Postives = 134/188 (71.28%), Query Frame = 0
Query: 133 RPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYI 320
RP++++GPSG GK TL++RLL E+P FGFS SHTTR PRPGE G DY F TRE ++ I++G+F+E A NLYGTS +A+Q VQ GKICILDID+QGV ++K DL PLYVFI PPS+ LE RLRGR TE EE + +RL AK E+EYG PG FD ++VN DLD AY +L+ +I
Sbjct: 3 RPVVLSGPSGSGKSTLLKRLLKEFPDEFGFSVSHTTRKPRPGEVNGKDYHFVTREEMEQAIEKGEFIEWAEFSGNLYGTSKKAVQDVQSNGKICILDIDMQGVKNIKKT-------DLNPLYVFIQPPSMEELEKRLRGRGTETEESLQKRLATAKDEMEYGKEPGAFDHIIVNDDLDKAYEELKEFI 183
BLAST of EWM29804.1 vs. NCBI_GenBank
Match: gi|829488465|gb|AKL71448.1| (Anc-gkdup Bayes4, partial [synthetic construct]) HSP 1 Score: 221.861 bits (564), Expect = 1.153e-68 Identity = 106/188 (56.38%), Postives = 133/188 (70.74%), Query Frame = 0
Query: 133 RPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYI 320
RP++++GPSG GK TL++RL EYP FGFS SHTTR PRPGE G DY F TRE ++ I++G+F+EHA NLYGTS +A+Q VQ +GKICILDID+QGV +K DL PLY+FI PPS+ LE RLRGR TE EE + +RL AK E+EY PG FD V+VN DL+ AY +L+ +I
Sbjct: 3 RPVVLSGPSGSGKSTLLKRLFKEYPDEFGFSVSHTTRKPRPGEVNGKDYHFVTREEMEQAIEKGEFIEHAEFSGNLYGTSKKAVQDVQSQGKICILDIDMQGVKQIKKT-------DLNPLYIFIQPPSIEELEKRLRGRGTETEESLQKRLAAAKEEMEYSKTPGAFDHVIVNDDLEAAYDELKDFI 183
BLAST of EWM29804.1 vs. NCBI_GenBank
Match: gi|553185402|ref|XP_005854246.1| (guanylate kinase [Nannochloropsis gaditana CCMP526] >gi|422294812|gb|EKU22112.1| guanylate kinase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 226.868 bits (577), Expect = 1.564e-68 Identity = 113/199 (56.78%), Postives = 142/199 (71.36%), Query Frame = 0
Query: 126 VDRMAVRRPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYIETMY 324
V + + RPL+I GPSGVGKGTL+ L E+ FGFS SHTTR PRPGE EGV Y FT+R+ ++A I+EG+FLE A VH NLYGTS EA+++VQ GK+C+LDIDVQGVI VK D+ P YVFI+PPS+ LE+RLRGR TE +D+ RL A+ E+EYG+A GNF+ VVVN L+ AY DL+T + Y
Sbjct: 139 VPKEELLRPLVICGPSGVGKGTLMNMLFEEFGGYFGFSVSHTTRAPRPGEVEGVHYNFTSRDAMEAAIEEGRFLEFARVHTNLYGTSLEAVRQVQRAGKVCVLDIDVQGVIKVKET-------DVNPHYVFIAPPSVEHLEARLRGRGTESAKDIETRLGAARTEIEYGLAKGNFEHVVVNDTLEKAYADLKTTLVGFY 330
BLAST of EWM29804.1 vs. NCBI_GenBank
Match: gi|585110958|gb|EWM28540.1| (gualynate kinase-1 [Nannochloropsis gaditana]) HSP 1 Score: 226.868 bits (577), Expect = 1.633e-68 Identity = 113/199 (56.78%), Postives = 142/199 (71.36%), Query Frame = 0
Query: 126 VDRMAVRRPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYIETMY 324
V + + RPL+I GPSGVGKGTL+ L E+ FGFS SHTTR PRPGE EGV Y FT+R+ ++A I+EG+FLE A VH NLYGTS EA+++VQ GK+C+LDIDVQGVI VK D+ P YVFI+PPS+ LE+RLRGR TE +D+ RL A+ E+EYG+A GNF+ VVVN L+ AY DL+T + Y
Sbjct: 139 VPKEELLRPLVICGPSGVGKGTLMNMLFEEFGGYFGFSVSHTTRAPRPGEVEGVHYNFTSRDAMEAAIEEGRFLEFARVHTNLYGTSLEAVRQVQRAGKVCVLDIDVQGVIKVKET-------DVNPHYVFIAPPSVEHLEARLRGRGTESAKDIETRLGAARAEIEYGLAKGNFEHVVVNDTLEKAYADLKTTLVGFY 330
BLAST of EWM29804.1 vs. NCBI_GenBank
Match: gi|829488469|gb|AKL71450.1| (Anc-gkdup AltALL, partial [synthetic construct]) HSP 1 Score: 221.476 bits (563), Expect = 1.964e-68 Identity = 105/188 (55.85%), Postives = 133/188 (70.74%), Query Frame = 0
Query: 133 RPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYI 320
RP++++GPSG GK TL++RL E+P FGFS SHTTR PRPGE G DY F TRE ++ I++G+F+EHA NLYGTS +A+Q VQ +GKICILDID+QGV +K DL PLY+FI PPS+ LE RLRGR TE EE + +RL A+ E+EY PG+FD V+VN DLD AY L+ +I
Sbjct: 3 RPVVLSGPSGSGKSTLLKRLFKEFPDEFGFSVSHTTRKPRPGEVNGKDYHFVTREEMEQMIEKGEFIEHAEFSGNLYGTSKKAVQDVQSQGKICILDIDMQGVKQIKKT-------DLNPLYIFIQPPSIEELEKRLRGRGTETEESLQKRLAAAREEMEYAQTPGSFDHVIVNDDLDKAYEKLKEFI 183 The following BLAST results are available for this feature:
BLAST of EWM29804.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|