EWM29804.1, cds879 (CDS) Nannochloropsis gaditana

Overview
NameEWM29804.1
Unique Namecds879
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:629277..630281 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29804.1
Productgualynate kinase-1
Orig transcript idgnl|cribi|Naga_100017g71.302.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:629277..630281 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0004385guanylate kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006163purine nucleotide metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
Vocabulary: INTERPRO
TermDefinition
IPR008144Guanylate_kin-like
IPR020590Guanylate_kinase_CS
IPR027417P-loop_NTPase
IPR017665Guanylate_kinase
IPR008145GK/Ca_channel_bsu
Homology
BLAST of EWM29804.1 vs. NCBI_GenBank
Match: gi|585112385|gb|EWM29804.1| (gualynate kinase-1 [Nannochloropsis gaditana])

HSP 1 Score: 684.1 bits (1764), Expect = 0.000e+0
Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 0
Query:    1 MHFISLCSYRQVAAGGRMGYSSLSFFPVAYVERHRRPAPFRVLYTACLIVLKAYHTSALNNFSASNPPFSSGFACLSSSSKDVSPSSPPRLTRRNFMTHGGSGSEHGTASSSMASSASSSSLDQPVDRMAVRRPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYIETMYYGDEEVQSSS 334
            MHFISLCSYRQVAAGGRMGYSSLSFFPVAYVERHRRPAPFRVLYTACLIVLKAYHTSALNNFSASNPPFSSGFACLSSSSKDVSPSSPPRLTRRNFMTHGGSGSEHGTASSSMASSASSSSLDQPVDRMAVRRPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYIETMYYGDEEVQSSS
Sbjct:    1 MHFISLCSYRQVAAGGRMGYSSLSFFPVAYVERHRRPAPFRVLYTACLIVLKAYHTSALNNFSASNPPFSSGFACLSSSSKDVSPSSPPRLTRRNFMTHGGSGSEHGTASSSMASSASSSSLDQPVDRMAVRRPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYIETMYYGDEEVQSSS 334          
BLAST of EWM29804.1 vs. NCBI_GenBank
Match: gi|553195656|ref|XP_005856179.1| (guanylate kinase, partial [Nannochloropsis gaditana CCMP526] >gi|422292882|gb|EKU20183.1| guanylate kinase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 667.152 bits (1720), Expect = 0.000e+0
Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0
Query:    9 YRQVAAGGRMGYSSLSFFPVAYVERHRRPAPFRVLYTACLIVLKAYHTSALNNFSASNPPFSSGFACLSSSSKDVSPSSPPRLTRRNFMTHGGSGSEHGTASSSMASSASSSSLDQPVDRMAVRRPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYIETMYYGDEEVQSSS 334
            YRQVAAGGRMGYSSLSFFPVAYVERHRRPAPFRVLYTACLIVLKAYHTSALNNFSASNPPFSSGFACLSSSSKDVSPSSPPRLTRRNFMTHGGSGSEHGTASSSMASSASSSSLDQPVDRMAVRRPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYIETMYYGDEEVQSSS
Sbjct:    1 YRQVAAGGRMGYSSLSFFPVAYVERHRRPAPFRVLYTACLIVLKAYHTSALNNFSASNPPFSSGFACLSSSSKDVSPSSPPRLTRRNFMTHGGSGSEHGTASSSMASSASSSSLDQPVDRMAVRRPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYIETMYYGDEEVQSSS 326          
BLAST of EWM29804.1 vs. NCBI_GenBank
Match: gi|299115624|emb|CBN75825.1| (Guanylate kinase (IC) [Ectocarpus siliculosus])

HSP 1 Score: 233.417 bits (594), Expect = 4.715e-72
Identity = 115/192 (59.90%), Postives = 140/192 (72.92%), Query Frame = 0
Query:  133 RPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYIETMY 324
            +PL+I GPSGVGKGTLI  L  ++P RFGFS SHTTR PRPGE +G  Y+F+ +  +QAEID+ KF+EHA VH NLYGTS  A+Q V   GKICILDIDVQGV SV+GA  RG L    P Y+FIS PS+ VLE+RLRGR TE EE + RRL NA  E+EYG+   NF+KVVVN  L++AY +L+   +  Y
Sbjct:   67 KPLVICGPSGVGKGTLINMLREDFPGRFGFSVSHTTRKPRPGEVDGTHYYFSDKREMQAEIDDNKFIEHANVHANLYGTSIAAVQTVTASGKICILDIDVQGVKSVRGA-GRGVLD---PHYLFISAPSMEVLEARLRGRGTETEEALQRRLANANAEMEYGLEADNFEKVVVNDGLEEAYAELKETAKAWY 254          
BLAST of EWM29804.1 vs. NCBI_GenBank
Match: gi|223997310|ref|XP_002288328.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975436|gb|EED93764.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 225.713 bits (574), Expect = 2.650e-69
Identity = 113/210 (53.81%), Postives = 147/210 (70.00%), Query Frame = 0
Query:  115 SSASSSSLDQPVDRMAVRRPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYIETMY 324
            + ++S+S DQP       RP++I GPSGVGKGTLI  L  +YP  FGFS SHTTR PR GE++GV Y FTT E ++ EIDEGKF+E+A VH N YGTS +A++ VQ++GKICILDIDVQGV +VK +        L  +YVF++PPS+  LE RLRGR TE EE VL+RL NAK E+++G+  GNFD+V  N DLD  +  +    ++ Y
Sbjct:   44 TKSASTSTDQP-------RPVVIAGPSGVGKGTLIELLRKKYPTEFGFSVSHTTRKPREGEQDGVHYNFTTVETIKGEIDEGKFVEYANVHGNYYGTSVQAVESVQKQGKICILDIDVQGVRNVKKSA-------LDAIYVFVAPPSMDELEKRLRGRGTETEEAVLKRLGNAKVELDFGLGEGNFDRVFTNDDLDKTFEAMVEQFKSWY 239          
BLAST of EWM29804.1 vs. NCBI_GenBank
Match: gi|290998583|ref|XP_002681860.1| (guanylate kinase [Naegleria gruberi] >gi|284095485|gb|EFC49116.1| guanylate kinase [Naegleria gruberi])

HSP 1 Score: 223.402 bits (568), Expect = 4.753e-69
Identity = 107/195 (54.87%), Postives = 140/195 (71.79%), Query Frame = 0
Query:  129 MAVRRPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGN--FDKVVVNADLDDAYIDLRTYIE 321
            + + RP++I GPSGVGKGTLI++L  EYP  FGFS SHTTRGPRPGE+ GV Y+F+T+E +Q EIDEGKF+EHA VH NLYGTSF+A+++VQ +GK C+LDID+QG   V+         +L PL +F+ PPS+ +LE RLRGR TE EE +  RLKNA++E+E         FD  V N DLD++Y  L+  I+
Sbjct:    9 LQLFRPIVICGPSGVGKGTLIQKLFKEYPNIFGFSVSHTTRGPRPGEENGVHYYFSTKEIMQKEIDEGKFIEHANVHGNLYGTSFQAVKEVQTKGKCCVLDIDIQGARQVRNN------KELNPLVLFVKPPSMDILEQRLRGRATETEESIQLRLKNARKELEEFEQDNTNLFDDSVENNDLDESYASLKLTIK 197          
BLAST of EWM29804.1 vs. NCBI_GenBank
Match: gi|829488467|gb|AKL71449.1| (Anc-gkdup Bayes5, partial [synthetic construct])

HSP 1 Score: 222.246 bits (565), Expect = 8.237e-69
Identity = 107/188 (56.91%), Postives = 134/188 (71.28%), Query Frame = 0
Query:  133 RPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYI 320
            RP++++GPSG GK TL++RLL E+P  FGFS SHTTR PRPGE  G DY F TRE ++  I++G+F+E A    NLYGTS +A+Q VQ  GKICILDID+QGV ++K         DL PLYVFI PPS+  LE RLRGR TE EE + +RL  AK E+EYG  PG FD ++VN DLD AY +L+ +I
Sbjct:    3 RPVVLSGPSGSGKSTLLKRLLKEFPDEFGFSVSHTTRKPRPGEVNGKDYHFVTREEMEQAIEKGEFIEWAEFSGNLYGTSKKAVQDVQSNGKICILDIDMQGVKNIKKT-------DLNPLYVFIQPPSMEELEKRLRGRGTETEESLQKRLATAKDEMEYGKEPGAFDHIIVNDDLDKAYEELKEFI 183          
BLAST of EWM29804.1 vs. NCBI_GenBank
Match: gi|829488465|gb|AKL71448.1| (Anc-gkdup Bayes4, partial [synthetic construct])

HSP 1 Score: 221.861 bits (564), Expect = 1.153e-68
Identity = 106/188 (56.38%), Postives = 133/188 (70.74%), Query Frame = 0
Query:  133 RPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYI 320
            RP++++GPSG GK TL++RL  EYP  FGFS SHTTR PRPGE  G DY F TRE ++  I++G+F+EHA    NLYGTS +A+Q VQ +GKICILDID+QGV  +K         DL PLY+FI PPS+  LE RLRGR TE EE + +RL  AK E+EY   PG FD V+VN DL+ AY +L+ +I
Sbjct:    3 RPVVLSGPSGSGKSTLLKRLFKEYPDEFGFSVSHTTRKPRPGEVNGKDYHFVTREEMEQAIEKGEFIEHAEFSGNLYGTSKKAVQDVQSQGKICILDIDMQGVKQIKKT-------DLNPLYIFIQPPSIEELEKRLRGRGTETEESLQKRLAAAKEEMEYSKTPGAFDHVIVNDDLEAAYDELKDFI 183          
BLAST of EWM29804.1 vs. NCBI_GenBank
Match: gi|553185402|ref|XP_005854246.1| (guanylate kinase [Nannochloropsis gaditana CCMP526] >gi|422294812|gb|EKU22112.1| guanylate kinase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 226.868 bits (577), Expect = 1.564e-68
Identity = 113/199 (56.78%), Postives = 142/199 (71.36%), Query Frame = 0
Query:  126 VDRMAVRRPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYIETMY 324
            V +  + RPL+I GPSGVGKGTL+  L  E+   FGFS SHTTR PRPGE EGV Y FT+R+ ++A I+EG+FLE A VH NLYGTS EA+++VQ  GK+C+LDIDVQGVI VK         D+ P YVFI+PPS+  LE+RLRGR TE  +D+  RL  A+ E+EYG+A GNF+ VVVN  L+ AY DL+T +   Y
Sbjct:  139 VPKEELLRPLVICGPSGVGKGTLMNMLFEEFGGYFGFSVSHTTRAPRPGEVEGVHYNFTSRDAMEAAIEEGRFLEFARVHTNLYGTSLEAVRQVQRAGKVCVLDIDVQGVIKVKET-------DVNPHYVFIAPPSVEHLEARLRGRGTESAKDIETRLGAARTEIEYGLAKGNFEHVVVNDTLEKAYADLKTTLVGFY 330          
BLAST of EWM29804.1 vs. NCBI_GenBank
Match: gi|585110958|gb|EWM28540.1| (gualynate kinase-1 [Nannochloropsis gaditana])

HSP 1 Score: 226.868 bits (577), Expect = 1.633e-68
Identity = 113/199 (56.78%), Postives = 142/199 (71.36%), Query Frame = 0
Query:  126 VDRMAVRRPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYIETMY 324
            V +  + RPL+I GPSGVGKGTL+  L  E+   FGFS SHTTR PRPGE EGV Y FT+R+ ++A I+EG+FLE A VH NLYGTS EA+++VQ  GK+C+LDIDVQGVI VK         D+ P YVFI+PPS+  LE+RLRGR TE  +D+  RL  A+ E+EYG+A GNF+ VVVN  L+ AY DL+T +   Y
Sbjct:  139 VPKEELLRPLVICGPSGVGKGTLMNMLFEEFGGYFGFSVSHTTRAPRPGEVEGVHYNFTSRDAMEAAIEEGRFLEFARVHTNLYGTSLEAVRQVQRAGKVCVLDIDVQGVIKVKET-------DVNPHYVFIAPPSVEHLEARLRGRGTESAKDIETRLGAARAEIEYGLAKGNFEHVVVNDTLEKAYADLKTTLVGFY 330          
BLAST of EWM29804.1 vs. NCBI_GenBank
Match: gi|829488469|gb|AKL71450.1| (Anc-gkdup AltALL, partial [synthetic construct])

HSP 1 Score: 221.476 bits (563), Expect = 1.964e-68
Identity = 105/188 (55.85%), Postives = 133/188 (70.74%), Query Frame = 0
Query:  133 RPLIITGPSGVGKGTLIRRLLGEYPLRFGFSCSHTTRGPRPGEKEGVDYFFTTRERLQAEIDEGKFLEHATVHNNLYGTSFEAIQKVQEEGKICILDIDVQGVISVKGALARGALHDLRPLYVFISPPSLAVLESRLRGRETEKEEDVLRRLKNAKREVEYGVAPGNFDKVVVNADLDDAYIDLRTYI 320
            RP++++GPSG GK TL++RL  E+P  FGFS SHTTR PRPGE  G DY F TRE ++  I++G+F+EHA    NLYGTS +A+Q VQ +GKICILDID+QGV  +K         DL PLY+FI PPS+  LE RLRGR TE EE + +RL  A+ E+EY   PG+FD V+VN DLD AY  L+ +I
Sbjct:    3 RPVVLSGPSGSGKSTLLKRLFKEFPDEFGFSVSHTTRKPRPGEVNGKDYHFVTREEMEQMIEKGEFIEHAEFSGNLYGTSKKAVQDVQSQGKICILDIDMQGVKQIKKT-------DLNPLYIFIQPPSIEELEKRLRGRGTETEESLQKRLAAAREEMEYAQTPGSFDHVIVNDDLDKAYEKLKEFI 183          
The following BLAST results are available for this feature:
BLAST of EWM29804.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112385|gb|EWM29804.1|0.000e+0100.00gualynate kinase-1 [Nannochloropsis gaditana][more]
gi|553195656|ref|XP_005856179.1|0.000e+0100.00guanylate kinase, partial [Nannochloropsis gaditan... [more]
gi|299115624|emb|CBN75825.1|4.715e-7259.90Guanylate kinase (IC) [Ectocarpus siliculosus][more]
gi|223997310|ref|XP_002288328.1|2.650e-6953.81predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|290998583|ref|XP_002681860.1|4.753e-6954.87guanylate kinase [Naegleria gruberi] >gi|284095485... [more]
gi|829488467|gb|AKL71449.1|8.237e-6956.91Anc-gkdup Bayes5, partial [synthetic construct][more]
gi|829488465|gb|AKL71448.1|1.153e-6856.38Anc-gkdup Bayes4, partial [synthetic construct][more]
gi|553185402|ref|XP_005854246.1|1.564e-6856.78guanylate kinase [Nannochloropsis gaditana CCMP526... [more]
gi|585110958|gb|EWM28540.1|1.633e-6856.78gualynate kinase-1 [Nannochloropsis gaditana][more]
gi|829488469|gb|AKL71450.1|1.964e-6855.85Anc-gkdup AltALL, partial [synthetic construct][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna879rna879Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications