EWM21890.1, cds8780 (CDS) Nannochloropsis gaditana

Overview
NameEWM21890.1
Unique Namecds8780
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:224759..225073 +
Alignment locationKK037250.1:225261..226178 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21890.1
Productwerner syndrome exonuclease
Orig transcript idgnl|cribi|Naga_100231g6.10121.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:224759..225073 +
KK037250.1supercontigKK037250.1:225261..226178 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:00084083'-5' exonuclease activity
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR0025623'-5'_exonuclease_dom
IPR012337RNaseH-like_dom
Homology
BLAST of EWM21890.1 vs. NCBI_GenBank
Match: gi|585102235|gb|EWM21890.1| (werner syndrome exonuclease [Nannochloropsis gaditana])

HSP 1 Score: 824.698 bits (2129), Expect = 0.000e+0
Identity = 410/410 (100.00%), Postives = 410/410 (100.00%), Query Frame = 0
Query:    1 MILRGQRRAYHALVRQEEFSARVGRKGVLPSSRPPPRGLACAVMDEGASWDSLGKQGLHSVQIEEPVAEYMEGGPLSRQSDSCNLTRMIEMTCPFSYGRGRETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAIYQAFHRRGLLDKVTLEELMLKWSLSSDEKDLKRARSLALESDLLRHLYVRFTGLQPTRPRAGNRRFGSDAISTGSKDKGGSSSRREGDRDRSGRSRTRGSTLAPVRRTIVVSEEPFSLQEIAVV 410
            MILRGQRRAYHALVRQEEFSARVGRKGVLPSSRPPPRGLACAVMDEGASWDSLGKQGLHSVQIEEPVAEYMEGGPLSRQSDSCNLTRMIEMTCPFSYGRGRETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAIYQAFHRRGLLDKVTLEELMLKWSLSSDEKDLKRARSLALESDLLRHLYVRFTGLQPTRPRAGNRRFGSDAISTGSKDKGGSSSRREGDRDRSGRSRTRGSTLAPVRRTIVVSEEPFSLQEIAVV
Sbjct:    1 MILRGQRRAYHALVRQEEFSARVGRKGVLPSSRPPPRGLACAVMDEGASWDSLGKQGLHSVQIEEPVAEYMEGGPLSRQSDSCNLTRMIEMTCPFSYGRGRETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAIYQAFHRRGLLDKVTLEELMLKWSLSSDEKDLKRARSLALESDLLRHLYVRFTGLQPTRPRAGNRRFGSDAISTGSKDKGGSSSRREGDRDRSGRSRTRGSTLAPVRRTIVVSEEPFSLQEIAVV 410          
BLAST of EWM21890.1 vs. NCBI_GenBank
Match: gi|971545660|ref|XP_015162977.1| (PREDICTED: Werner Syndrome-like exonuclease [Solanum tuberosum])

HSP 1 Score: 121.709 bits (304), Expect = 6.361e-29
Identity = 67/197 (34.01%), Postives = 96/197 (48.73%), Query Frame = 0
Query:   90 EMTCPFSYGRGRETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAI 286
            + T  +    G +T++  V      AN W   +  +        G    +GLD EW+P+F P     +SA LQL     CLI+QL  L  IP+ L + L +P    VGV V ED+ +L+  +GL     VD+  V    +P    F    L+ L   + G+ +PKP+ + + NWE  ELS  QVEYA +DA A   I
Sbjct:   11 DTTTKYHINFGGQTIETTVTNKAFVANEWATSMLSKY------SGKQTVVGLDNEWKPNFSP-YTNNKSATLQLCIDNTCLIVQLFYLDEIPQTLKKFLANPNFTFVGVEVGEDILKLKNQYGLVCSSQVDIRDVAKNKWP--GRFSRPGLKDLANEICGLYMPKPKHVSMSNWEARELSVSQVEYACIDAYASYKI 198          
BLAST of EWM21890.1 vs. NCBI_GenBank
Match: gi|1026075034|ref|XP_016581901.1| (PREDICTED: Werner Syndrome-like exonuclease [Capsicum annuum])

HSP 1 Score: 118.627 bits (296), Expect = 9.768e-28
Identity = 63/185 (34.05%), Postives = 93/185 (50.27%), Query Frame = 0
Query:  102 ETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAI 286
            +T+   V      AN W  ++  +        G    +GLD+EWRP+F P     +SA LQL    +CLI+QL  L  IP+ L   L +P    VGV V ED+ +L+ ++G       D+  V    +P    + +  L+ L   + G+ +PKP+ I + NWE  +LS  QVEYA +DA A   I
Sbjct:   24 QTIVTTVTNKAAVANEWASKMLTKY------AGKQTVVGLDIEWRPNFSP-YSNNKSATLQLCIDYMCLIVQLLHLDQIPQTLKNFLANPNFIFVGVEVGEDILKLKNEYGFVCSNKADIRDVAKNKWP--GRYSLPGLKDLASDICGLSVPKPEHISMSNWEAMDLSISQVEYACIDAYASYKI 199          
BLAST of EWM21890.1 vs. NCBI_GenBank
Match: gi|1026075032|ref|XP_016581900.1| (PREDICTED: Werner Syndrome-like exonuclease [Capsicum annuum])

HSP 1 Score: 112.079 bits (279), Expect = 2.043e-25
Identity = 63/187 (33.69%), Postives = 91/187 (48.66%), Query Frame = 0
Query:  100 GRETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAI 286
            G +T+   V       N W   +  +        G    +GLD EWRP+F P   + +SA LQL     CLI+QL  L  IP+ L + L +P    VGV V ED+++L+ ++GL      D+  V    +P    F    L++L   + G+ +PKP+ +   NWE   LS  QVEY  +DA A   I
Sbjct:   16 GGQTIVTTVTSKAAVVNEWASEMLSKY------AGKQTVVGLDSEWRPTFSP-YTSNKSATLQLCIDNTCLIVQLFYLDEIPQVLKKFLANPNFIFVGVEVAEDISKLKNEYGLVGSSMADIRDVAKNKWP--GRFSRPGLKELASDICGLYMPKPKHVCQSNWEARFLSEAQVEYGCIDAYASYKI 193          
BLAST of EWM21890.1 vs. NCBI_GenBank
Match: gi|969999288|ref|XP_015081936.1| (PREDICTED: Werner syndrome ATP-dependent helicase homolog [Solanum pennellii])

HSP 1 Score: 109.768 bits (273), Expect = 1.375e-24
Identity = 63/195 (32.31%), Postives = 94/195 (48.21%), Query Frame = 0
Query:   92 TCPFSYGRGRETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAI 286
            T  ++   G +T++  V      AN W + +  +        G    +GLD EW+P+F P   + +SA LQL     CLI+QL  L  IP+ L + L +P    VGV V ED+ +L+ ++GL    + D+       +P    F    L+ L   + G+ + KP  +   NWE   LS  QVEYA +DA A   I
Sbjct:   13 TSKYNVKFGGQTIETTVTNKAAVANEWANAMLSKY------SGRQTVVGLDNEWKPTFSP-YTSNKSATLQLCIDSSCLIVQLFYLDEIPQILKKFLANPNFVFVGVEVAEDILKLKNEYGLVCNSYDDIRDFAMNEWP--GRFSRPGLKDLASEICGLRMTKPDHVCQSNWEASVLSEAQVEYACIDAYASYKI 198          
BLAST of EWM21890.1 vs. NCBI_GenBank
Match: gi|460370924|ref|XP_004231298.1| (PREDICTED: Werner Syndrome-like exonuclease [Solanum lycopersicum])

HSP 1 Score: 109.768 bits (273), Expect = 1.419e-24
Identity = 63/192 (32.81%), Postives = 93/192 (48.44%), Query Frame = 0
Query:   95 FSYGRGRETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAI 286
            ++   G +T++  V      AN W + +  +        G    +GLD EW+P+F     + +SA LQL     CLI+QL  L  IP+ L + L +P    VGV V ED+ +L+ ++GL      D+  V    +P    F    L+ L  A+ G+ + KP  +   NWE   LS  QVEYA +DA A   I
Sbjct:   16 YNVKFGGQTIETTVTNKAAVANEWANAMLSKY------SGRQKVVGLDSEWKPTF-----SNKSATLQLCIANTCLIVQLFYLDEIPQSLKKFLANPNFVFVGVEVAEDILKLKNEYGLVCNSHEDIRDVAMNKWP--GRFSRPGLKDLASAISGLYMTKPDHVCQSNWEASVLSEAQVEYACIDAYASYKI 194          
BLAST of EWM21890.1 vs. NCBI_GenBank
Match: gi|698514095|ref|XP_009801954.1| (PREDICTED: Werner Syndrome-like exonuclease [Nicotiana sylvestris])

HSP 1 Score: 109.383 bits (272), Expect = 2.944e-24
Identity = 62/187 (33.16%), Postives = 93/187 (49.73%), Query Frame = 0
Query:  100 GRETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAI 286
            G  T++  V      AN W   + ++        G D  +GLD EWRP+F P + + ++A LQL     CLI+QL  L  +P+ L   L +P    VGV V ED+ +L+ ++ L      D+  V    +P    +    L+ L   + G+ +PKP+ + + NWE   LS  QVEYA +DA A   I
Sbjct:   32 GGRTIETTVTNKAAIANEWATEMLNKY------AGKDTVVGLDNEWRPNFSPYR-SNKTATLQLCIDDRCLIVQLFYLDEMPQTLKTFLANPNFIFVGVEVAEDILKLKNEYRLVCNRSADIRDVAKSTWP--GRYSRPGLKDLAREICGLYMPKPKHVCMSNWEARVLSESQVEYACIDAYASYKI 209          
BLAST of EWM21890.1 vs. NCBI_GenBank
Match: gi|1025411397|ref|XP_016439648.1| (PREDICTED: Werner Syndrome-like exonuclease [Nicotiana tabacum])

HSP 1 Score: 108.612 bits (270), Expect = 3.848e-24
Identity = 63/187 (33.69%), Postives = 92/187 (49.20%), Query Frame = 0
Query:  100 GRETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAI 286
            G  T++  V      AN W   +  +        G D  +GLD EWRP+F P + + ++A LQL     CLI+QL  L  IP+ L   L +P    VGV V ED+ +L+ ++ L      D+  V    +P    +    L+ L   + G+ +PKP+ + + NWE   LS  QVEYA +DA A   I
Sbjct:   23 GGRTIETTVTNKAAIANEWATEMLSKY------AGKDTVVGLDNEWRPNFSPYR-SNKTATLQLCIDDRCLIVQLFYLDEIPQTLKTFLANPNFIFVGVEVAEDILKLKNEYRLVCNRSADIRDVAKSTWP--GRYSRPGLKDLAKDICGLYMPKPKHVCMSNWEARVLSESQVEYACIDAYASYKI 200          
BLAST of EWM21890.1 vs. NCBI_GenBank
Match: gi|698497691|ref|XP_009794801.1| (PREDICTED: Werner Syndrome-like exonuclease [Nicotiana sylvestris] >gi|698545441|ref|XP_009767385.1| PREDICTED: Werner Syndrome-like exonuclease [Nicotiana sylvestris])

HSP 1 Score: 108.227 bits (269), Expect = 5.473e-24
Identity = 62/187 (33.16%), Postives = 93/187 (49.73%), Query Frame = 0
Query:  100 GRETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAI 286
            G  T++  V      AN W   + ++        G D  +GLD EWRP+F P + + ++A LQL     CLI+QL  L  +P+ L   L +P    VGV V ED+ +L+ ++ L      D+  V    +P    +    L+ L   + G+ +PKP+ + + NWE   LS  QVEYA +DA A   I
Sbjct:   22 GGRTIETTVTNKAAIANEWATEMLNKY------AGKDTVVGLDNEWRPNFSPYR-SNKTATLQLCIDDRCLIVQLFYLDEMPQTLKTFLANPNFIFVGVEVAEDILKLKNEYRLVCNRSADIRDVAKSTWP--GRYSRPGLKDLAREICGLYMPKPKHVCMSNWEARVLSESQVEYACIDAYASYKI 199          
BLAST of EWM21890.1 vs. NCBI_GenBank
Match: gi|697110476|ref|XP_009609105.1| (PREDICTED: Werner Syndrome-like exonuclease [Nicotiana tomentosiformis])

HSP 1 Score: 107.842 bits (268), Expect = 7.818e-24
Identity = 64/187 (34.22%), Postives = 91/187 (48.66%), Query Frame = 0
Query:  100 GRETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAI 286
            G  T++  V      AN W   +  +        G D  +GLD EWRP+F P   + +SA LQL     CLI+QL  L  IP+ L   L +P    VGV V ED+ +L+ ++GL      D+  +    +P    +    L+ L   + G+ +PKP+ +   NWE   LS  QVEYA +DA A   I
Sbjct:   22 GGRTIETTVTNKAAIANEWATEMLSKY------AGKDTVVGLDNEWRPTFIP-YTSNKSATLQLCIDDKCLIVQLFYLDEIPQTLKTFLANPNFIFVGVEVAEDILKLKNEYGLVCNRRADIRDIAKSKWP--GRYSRPGLKDLAREICGLYMPKPKHVCQSNWEARVLSESQVEYACIDAYASYKI 199          
The following BLAST results are available for this feature:
BLAST of EWM21890.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102235|gb|EWM21890.1|0.000e+0100.00werner syndrome exonuclease [Nannochloropsis gadit... [more]
gi|971545660|ref|XP_015162977.1|6.361e-2934.01PREDICTED: Werner Syndrome-like exonuclease [Solan... [more]
gi|1026075034|ref|XP_016581901.1|9.768e-2834.05PREDICTED: Werner Syndrome-like exonuclease [Capsi... [more]
gi|1026075032|ref|XP_016581900.1|2.043e-2533.69PREDICTED: Werner Syndrome-like exonuclease [Capsi... [more]
gi|969999288|ref|XP_015081936.1|1.375e-2432.31PREDICTED: Werner syndrome ATP-dependent helicase ... [more]
gi|460370924|ref|XP_004231298.1|1.419e-2432.81PREDICTED: Werner Syndrome-like exonuclease [Solan... [more]
gi|698514095|ref|XP_009801954.1|2.944e-2433.16PREDICTED: Werner Syndrome-like exonuclease [Nicot... [more]
gi|1025411397|ref|XP_016439648.1|3.848e-2433.69PREDICTED: Werner Syndrome-like exonuclease [Nicot... [more]
gi|698497691|ref|XP_009794801.1|5.473e-2433.16PREDICTED: Werner Syndrome-like exonuclease [Nicot... [more]
gi|697110476|ref|XP_009609105.1|7.818e-2434.22PREDICTED: Werner Syndrome-like exonuclease [Nicot... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8810rna8810Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications