EWM21890.1, cds8780 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21890.1 vs. NCBI_GenBank
Match: gi|585102235|gb|EWM21890.1| (werner syndrome exonuclease [Nannochloropsis gaditana]) HSP 1 Score: 824.698 bits (2129), Expect = 0.000e+0 Identity = 410/410 (100.00%), Postives = 410/410 (100.00%), Query Frame = 0
Query: 1 MILRGQRRAYHALVRQEEFSARVGRKGVLPSSRPPPRGLACAVMDEGASWDSLGKQGLHSVQIEEPVAEYMEGGPLSRQSDSCNLTRMIEMTCPFSYGRGRETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAIYQAFHRRGLLDKVTLEELMLKWSLSSDEKDLKRARSLALESDLLRHLYVRFTGLQPTRPRAGNRRFGSDAISTGSKDKGGSSSRREGDRDRSGRSRTRGSTLAPVRRTIVVSEEPFSLQEIAVV 410
MILRGQRRAYHALVRQEEFSARVGRKGVLPSSRPPPRGLACAVMDEGASWDSLGKQGLHSVQIEEPVAEYMEGGPLSRQSDSCNLTRMIEMTCPFSYGRGRETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAIYQAFHRRGLLDKVTLEELMLKWSLSSDEKDLKRARSLALESDLLRHLYVRFTGLQPTRPRAGNRRFGSDAISTGSKDKGGSSSRREGDRDRSGRSRTRGSTLAPVRRTIVVSEEPFSLQEIAVV
Sbjct: 1 MILRGQRRAYHALVRQEEFSARVGRKGVLPSSRPPPRGLACAVMDEGASWDSLGKQGLHSVQIEEPVAEYMEGGPLSRQSDSCNLTRMIEMTCPFSYGRGRETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAIYQAFHRRGLLDKVTLEELMLKWSLSSDEKDLKRARSLALESDLLRHLYVRFTGLQPTRPRAGNRRFGSDAISTGSKDKGGSSSRREGDRDRSGRSRTRGSTLAPVRRTIVVSEEPFSLQEIAVV 410
BLAST of EWM21890.1 vs. NCBI_GenBank
Match: gi|971545660|ref|XP_015162977.1| (PREDICTED: Werner Syndrome-like exonuclease [Solanum tuberosum]) HSP 1 Score: 121.709 bits (304), Expect = 6.361e-29 Identity = 67/197 (34.01%), Postives = 96/197 (48.73%), Query Frame = 0
Query: 90 EMTCPFSYGRGRETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAI 286
+ T + G +T++ V AN W + + G +GLD EW+P+F P +SA LQL CLI+QL L IP+ L + L +P VGV V ED+ +L+ +GL VD+ V +P F L+ L + G+ +PKP+ + + NWE ELS QVEYA +DA A I
Sbjct: 11 DTTTKYHINFGGQTIETTVTNKAFVANEWATSMLSKY------SGKQTVVGLDNEWKPNFSP-YTNNKSATLQLCIDNTCLIVQLFYLDEIPQTLKKFLANPNFTFVGVEVGEDILKLKNQYGLVCSSQVDIRDVAKNKWP--GRFSRPGLKDLANEICGLYMPKPKHVSMSNWEARELSVSQVEYACIDAYASYKI 198
BLAST of EWM21890.1 vs. NCBI_GenBank
Match: gi|1026075034|ref|XP_016581901.1| (PREDICTED: Werner Syndrome-like exonuclease [Capsicum annuum]) HSP 1 Score: 118.627 bits (296), Expect = 9.768e-28 Identity = 63/185 (34.05%), Postives = 93/185 (50.27%), Query Frame = 0
Query: 102 ETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAI 286
+T+ V AN W ++ + G +GLD+EWRP+F P +SA LQL +CLI+QL L IP+ L L +P VGV V ED+ +L+ ++G D+ V +P + + L+ L + G+ +PKP+ I + NWE +LS QVEYA +DA A I
Sbjct: 24 QTIVTTVTNKAAVANEWASKMLTKY------AGKQTVVGLDIEWRPNFSP-YSNNKSATLQLCIDYMCLIVQLLHLDQIPQTLKNFLANPNFIFVGVEVGEDILKLKNEYGFVCSNKADIRDVAKNKWP--GRYSLPGLKDLASDICGLSVPKPEHISMSNWEAMDLSISQVEYACIDAYASYKI 199
BLAST of EWM21890.1 vs. NCBI_GenBank
Match: gi|1026075032|ref|XP_016581900.1| (PREDICTED: Werner Syndrome-like exonuclease [Capsicum annuum]) HSP 1 Score: 112.079 bits (279), Expect = 2.043e-25 Identity = 63/187 (33.69%), Postives = 91/187 (48.66%), Query Frame = 0
Query: 100 GRETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAI 286
G +T+ V N W + + G +GLD EWRP+F P + +SA LQL CLI+QL L IP+ L + L +P VGV V ED+++L+ ++GL D+ V +P F L++L + G+ +PKP+ + NWE LS QVEY +DA A I
Sbjct: 16 GGQTIVTTVTSKAAVVNEWASEMLSKY------AGKQTVVGLDSEWRPTFSP-YTSNKSATLQLCIDNTCLIVQLFYLDEIPQVLKKFLANPNFIFVGVEVAEDISKLKNEYGLVGSSMADIRDVAKNKWP--GRFSRPGLKELASDICGLYMPKPKHVCQSNWEARFLSEAQVEYGCIDAYASYKI 193
BLAST of EWM21890.1 vs. NCBI_GenBank
Match: gi|969999288|ref|XP_015081936.1| (PREDICTED: Werner syndrome ATP-dependent helicase homolog [Solanum pennellii]) HSP 1 Score: 109.768 bits (273), Expect = 1.375e-24 Identity = 63/195 (32.31%), Postives = 94/195 (48.21%), Query Frame = 0
Query: 92 TCPFSYGRGRETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAI 286
T ++ G +T++ V AN W + + + G +GLD EW+P+F P + +SA LQL CLI+QL L IP+ L + L +P VGV V ED+ +L+ ++GL + D+ +P F L+ L + G+ + KP + NWE LS QVEYA +DA A I
Sbjct: 13 TSKYNVKFGGQTIETTVTNKAAVANEWANAMLSKY------SGRQTVVGLDNEWKPTFSP-YTSNKSATLQLCIDSSCLIVQLFYLDEIPQILKKFLANPNFVFVGVEVAEDILKLKNEYGLVCNSYDDIRDFAMNEWP--GRFSRPGLKDLASEICGLRMTKPDHVCQSNWEASVLSEAQVEYACIDAYASYKI 198
BLAST of EWM21890.1 vs. NCBI_GenBank
Match: gi|460370924|ref|XP_004231298.1| (PREDICTED: Werner Syndrome-like exonuclease [Solanum lycopersicum]) HSP 1 Score: 109.768 bits (273), Expect = 1.419e-24 Identity = 63/192 (32.81%), Postives = 93/192 (48.44%), Query Frame = 0
Query: 95 FSYGRGRETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAI 286
++ G +T++ V AN W + + + G +GLD EW+P+F + +SA LQL CLI+QL L IP+ L + L +P VGV V ED+ +L+ ++GL D+ V +P F L+ L A+ G+ + KP + NWE LS QVEYA +DA A I
Sbjct: 16 YNVKFGGQTIETTVTNKAAVANEWANAMLSKY------SGRQKVVGLDSEWKPTF-----SNKSATLQLCIANTCLIVQLFYLDEIPQSLKKFLANPNFVFVGVEVAEDILKLKNEYGLVCNSHEDIRDVAMNKWP--GRFSRPGLKDLASAISGLYMTKPDHVCQSNWEASVLSEAQVEYACIDAYASYKI 194
BLAST of EWM21890.1 vs. NCBI_GenBank
Match: gi|698514095|ref|XP_009801954.1| (PREDICTED: Werner Syndrome-like exonuclease [Nicotiana sylvestris]) HSP 1 Score: 109.383 bits (272), Expect = 2.944e-24 Identity = 62/187 (33.16%), Postives = 93/187 (49.73%), Query Frame = 0
Query: 100 GRETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAI 286
G T++ V AN W + ++ G D +GLD EWRP+F P + + ++A LQL CLI+QL L +P+ L L +P VGV V ED+ +L+ ++ L D+ V +P + L+ L + G+ +PKP+ + + NWE LS QVEYA +DA A I
Sbjct: 32 GGRTIETTVTNKAAIANEWATEMLNKY------AGKDTVVGLDNEWRPNFSPYR-SNKTATLQLCIDDRCLIVQLFYLDEMPQTLKTFLANPNFIFVGVEVAEDILKLKNEYRLVCNRSADIRDVAKSTWP--GRYSRPGLKDLAREICGLYMPKPKHVCMSNWEARVLSESQVEYACIDAYASYKI 209
BLAST of EWM21890.1 vs. NCBI_GenBank
Match: gi|1025411397|ref|XP_016439648.1| (PREDICTED: Werner Syndrome-like exonuclease [Nicotiana tabacum]) HSP 1 Score: 108.612 bits (270), Expect = 3.848e-24 Identity = 63/187 (33.69%), Postives = 92/187 (49.20%), Query Frame = 0
Query: 100 GRETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAI 286
G T++ V AN W + + G D +GLD EWRP+F P + + ++A LQL CLI+QL L IP+ L L +P VGV V ED+ +L+ ++ L D+ V +P + L+ L + G+ +PKP+ + + NWE LS QVEYA +DA A I
Sbjct: 23 GGRTIETTVTNKAAIANEWATEMLSKY------AGKDTVVGLDNEWRPNFSPYR-SNKTATLQLCIDDRCLIVQLFYLDEIPQTLKTFLANPNFIFVGVEVAEDILKLKNEYRLVCNRSADIRDVAKSTWP--GRYSRPGLKDLAKDICGLYMPKPKHVCMSNWEARVLSESQVEYACIDAYASYKI 200
BLAST of EWM21890.1 vs. NCBI_GenBank
Match: gi|698497691|ref|XP_009794801.1| (PREDICTED: Werner Syndrome-like exonuclease [Nicotiana sylvestris] >gi|698545441|ref|XP_009767385.1| PREDICTED: Werner Syndrome-like exonuclease [Nicotiana sylvestris]) HSP 1 Score: 108.227 bits (269), Expect = 5.473e-24 Identity = 62/187 (33.16%), Postives = 93/187 (49.73%), Query Frame = 0
Query: 100 GRETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAI 286
G T++ V AN W + ++ G D +GLD EWRP+F P + + ++A LQL CLI+QL L +P+ L L +P VGV V ED+ +L+ ++ L D+ V +P + L+ L + G+ +PKP+ + + NWE LS QVEYA +DA A I
Sbjct: 22 GGRTIETTVTNKAAIANEWATEMLNKY------AGKDTVVGLDNEWRPNFSPYR-SNKTATLQLCIDDRCLIVQLFYLDEMPQTLKTFLANPNFIFVGVEVAEDILKLKNEYRLVCNRSADIRDVAKSTWP--GRYSRPGLKDLAREICGLYMPKPKHVCMSNWEARVLSESQVEYACIDAYASYKI 199
BLAST of EWM21890.1 vs. NCBI_GenBank
Match: gi|697110476|ref|XP_009609105.1| (PREDICTED: Werner Syndrome-like exonuclease [Nicotiana tomentosiformis]) HSP 1 Score: 107.842 bits (268), Expect = 7.818e-24 Identity = 64/187 (34.22%), Postives = 91/187 (48.66%), Query Frame = 0
Query: 100 GRETVKVAVIQGTTAANYWCDRLCHRVRKELGPGGGDGAIGLDVEWRPSFKPNQPARRSAILQLSGPGLCLIIQLQRLSHIPRQLGRLLRDPTLPKVGVSVEEDLARLREDWGLSSRCFVDVGRVGGRVFPEGAPFRIISLQKLMGALWGICLPKPQSIRLGNWETPELSSRQVEYAALDAMAGRAI 286
G T++ V AN W + + G D +GLD EWRP+F P + +SA LQL CLI+QL L IP+ L L +P VGV V ED+ +L+ ++GL D+ + +P + L+ L + G+ +PKP+ + NWE LS QVEYA +DA A I
Sbjct: 22 GGRTIETTVTNKAAIANEWATEMLSKY------AGKDTVVGLDNEWRPTFIP-YTSNKSATLQLCIDDKCLIVQLFYLDEIPQTLKTFLANPNFIFVGVEVAEDILKLKNEYGLVCNRRADIRDIAKSKWP--GRYSRPGLKDLAREICGLYMPKPKHVCQSNWEARVLSESQVEYACIDAYASYKI 199 The following BLAST results are available for this feature:
BLAST of EWM21890.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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