EWM29858.1, cds877 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29858.1 vs. NCBI_GenBank
Match: gi|585112439|gb|EWM29858.1| (dnl-type zinc finger [Nannochloropsis gaditana]) HSP 1 Score: 670.233 bits (1728), Expect = 0.000e+0 Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0
Query: 1 MKNTGFFPVRIRDERQRTQGNTCTSTGRAKKHSNTCSMDRMDACSTWSSQLVYVLLFFASGVRAAGIGYYADTSNCNAAFQPCPAPLITPSSLPLLSRRQDLLESRRAHGRRKEFFLTVARGKGFGKKPRGDGEEDGKQDGAQEASKVEEGPSIIRPTFSHRGSSANAAGVTTTGSSAAPSPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDFGGLVKKGKEGESNPAGGKVTLDDILAARGEEAKYLDIKSNPELAAKRMNRVGARSDMGRLGGMIYIVSIVYQMVGYHNLDKRDKEE 322
MKNTGFFPVRIRDERQRTQGNTCTSTGRAKKHSNTCSMDRMDACSTWSSQLVYVLLFFASGVRAAGIGYYADTSNCNAAFQPCPAPLITPSSLPLLSRRQDLLESRRAHGRRKEFFLTVARGKGFGKKPRGDGEEDGKQDGAQEASKVEEGPSIIRPTFSHRGSSANAAGVTTTGSSAAPSPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDFGGLVKKGKEGESNPAGGKVTLDDILAARGEEAKYLDIKSNPELAAKRMNRVGARSDMGRLGGMIYIVSIVYQMVGYHNLDKRDKEE
Sbjct: 1 MKNTGFFPVRIRDERQRTQGNTCTSTGRAKKHSNTCSMDRMDACSTWSSQLVYVLLFFASGVRAAGIGYYADTSNCNAAFQPCPAPLITPSSLPLLSRRQDLLESRRAHGRRKEFFLTVARGKGFGKKPRGDGEEDGKQDGAQEASKVEEGPSIIRPTFSHRGSSANAAGVTTTGSSAAPSPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDFGGLVKKGKEGESNPAGGKVTLDDILAARGEEAKYLDIKSNPELAAKRMNRVGARSDMGRLGGMIYIVSIVYQMVGYHNLDKRDKEE 322
BLAST of EWM29858.1 vs. NCBI_GenBank
Match: gi|1108474948|emb|CRK96452.1| (CLUMA_CG009871, isoform A [Clunio marinus]) HSP 1 Score: 72.4034 bits (176), Expect = 6.580e-12 Identity = 42/118 (35.59%), Postives = 60/118 (50.85%), Query Frame = 0
Query: 157 PTFSH-RGSSANAAGVTTTGSSAAPSPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDFGGLVKKGKEGESNPAGGKVTLDDILAARGEEAKYLDI 273
PT S + + NA T SS +K QM+YTC +C RN + +VA+T+G+V+ RC C+ HLVADNL G K KV ++DIL +GEE + + +
Sbjct: 41 PTISSCKQTELNADKPTDQLSSVPLGQLEKKMQMMYTCKVCGTRNSQTISKVAYTQGVVIVRCSGCENNHLVADNL------GWFK----------DKKVNIEDILREKGEEVRKVTL 142
BLAST of EWM29858.1 vs. NCBI_GenBank
Match: gi|219122820|ref|XP_002181736.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407012|gb|EEC46950.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 73.1738 bits (178), Expect = 3.038e-11 Identity = 53/179 (29.61%), Postives = 90/179 (50.28%), Query Frame = 0
Query: 124 GFGKKPR------GDGEED----GKQDGAQEASKVEEGPSIIRPTFS------HRGSSANAAGVTTTGSSAAPSPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDFGGLVKKGKEGESNPAGGKVTLDDILAARGEEAKYLDIKSNPELAAKRMNR 286
G +PR +GE D DGA++ E P + P F H +++ A +TTT ++ +RKF +LYTCN+C+ RN+ +V R+A+ +G+V+A C+ C +HL+ADNL G K E+ P G T++ ++ EE + ++N + R+++
Sbjct: 92 ALGSRPRRRNSDRDEGEADRSNYHSDDGAEK-----EIPQL--PAFGATSRGMHSSATSRAKNMTTTDATLV----NRKFDLLYTCNLCDTRNVHKVTRIAYHKGVVIATCRGCAVQHLIADNL------GFTKL---WENAPHKG--TIEGYFESQNEEQIDAENQANTQAVVSRVSK 248
BLAST of EWM29858.1 vs. NCBI_GenBank
Match: gi|586526449|ref|XP_006918169.1| (PREDICTED: DNL-type zinc finger protein [Pteropus alecto] >gi|431899004|gb|ELK07374.1| DNL-type zinc finger protein [Pteropus alecto]) HSP 1 Score: 69.707 bits (169), Expect = 9.689e-11 Identity = 42/126 (33.33%), Postives = 65/126 (51.59%), Query Frame = 0
Query: 151 GPSIIRPTFSHRGSSANAAGVTTTG------SSAAPSPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNL---SKLDFGGLVKKGKEGESNPAGGKVTLDDILAARGEE 267
GP + R RG+ AAG G +S+ P P + +Q++YTC +C R+ Q+ ++A+ +G+V+ C CD H++ADNL S LD GK +++ILAARGE+
Sbjct: 20 GPGLRR--LWGRGARPTAAGKRRAGDWGWRPASSEPGPRATHYQLVYTCKVCGTRSSKQISKLAYHQGVVIVTCPGCDNHHIIADNLGWFSDLD-----------------GKRNIEEILAARGEK 126
BLAST of EWM29858.1 vs. NCBI_GenBank
Match: gi|976920280|gb|KVI05012.1| (Mitochondrial import protein TIM15 [Cynara cardunculus var. scolymus]) HSP 1 Score: 70.0922 bits (170), Expect = 1.207e-10 Identity = 37/99 (37.37%), Postives = 54/99 (54.55%), Query Frame = 0
Query: 171 VTTTGSSAAPSPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDFGGLVKKGKEGESNPAGGKVTLDDILAARGEEAK 269
VT + S P M++TC +CE R++ + R ++ +G+VVARC CD HL+AD+L G+ G K +++DILAARGEE K
Sbjct: 92 VTFSAKSELKISPRHDLAMMFTCKVCETRSVKTISRESYEKGVVVARCGGCDNYHLIADHL------GIF-----------GEKGSIEDILAARGEEVK 173
BLAST of EWM29858.1 vs. NCBI_GenBank
Match: gi|645255007|ref|XP_008233298.1| (PREDICTED: mitochondrial protein import protein ZIM17 [Prunus mume]) HSP 1 Score: 68.9366 bits (167), Expect = 2.664e-10 Identity = 36/103 (34.95%), Postives = 53/103 (51.46%), Query Frame = 0
Query: 167 NAAGVTTTGSSAAPSPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDFGGLVKKGKEGESNPAGGKVTLDDILAARGEEAK 269
N++ V + ++ + P ML+TC +CE R++ R ++ G+VVARC CD HL+AD+L G T++DILAARGEE K
Sbjct: 86 NSSDVKFSAAANLKTSPRHDLAMLFTCKVCETRSMKTCSRESYESGVVVARCGGCDNLHLIADHLGYF-----------------GAPGTIEDILAARGEEVK 171
BLAST of EWM29858.1 vs. NCBI_GenBank
Match: gi|1072234519|gb|OEU19248.1| (hypothetical protein FRACYDRAFT_235297 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 68.5514 bits (166), Expect = 2.800e-10 Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 0
Query: 184 SRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNL 231
S KF + YTCN+CE RN + V R+A+ EG+V+A CK C AKH +ADNL
Sbjct: 72 SSKFSLQYTCNVCEHRNRVIVSRMAYREGVVIAICKGCTAKHWIADNL 119
BLAST of EWM29858.1 vs. NCBI_GenBank
Match: gi|759148608|ref|XP_011368287.1| (PREDICTED: DNL-type zinc finger protein, partial [Pteropus vampyrus]) HSP 1 Score: 66.6254 bits (161), Expect = 4.406e-10 Identity = 31/93 (33.33%), Postives = 53/93 (56.99%), Query Frame = 0
Query: 176 SSAAPSPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDFGGLVKKGKEGESNPAGGKVTLDDILAARGEEA 268
+S+ P P + +Q++YTC +C R+ Q+ ++A+ +G+V+ C CD H++ADNL G + GK +++ILAARGE+
Sbjct: 4 ASSEPGPRATHYQLVYTCKVCGTRSSKQISKLAYHQGVVIVTCPGCDNHHIIADNL--------------GWFSDLDGKRNIEEILAARGEKV 82
BLAST of EWM29858.1 vs. NCBI_GenBank
Match: gi|1191666064|gb|OTG18032.1| (putative import protein [Helianthus annuus]) HSP 1 Score: 67.781 bits (164), Expect = 7.209e-10 Identity = 37/103 (35.92%), Postives = 51/103 (49.51%), Query Frame = 0
Query: 167 NAAGVTTTGSSAAPSPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDFGGLVKKGKEGESNPAGGKVTLDDILAARGEEAK 269
N V T S P M++TC +CE R++ + R ++ +G VVARC C+ HL+AD+L G K T++DILAARGEE K
Sbjct: 89 NNNDVAFTAKSELKISPRHDLAMMFTCKVCETRSVKTISRESYEKGAVVARCGGCNNYHLIADHLGIF-----------------GEKCTIEDILAARGEEVK 174
BLAST of EWM29858.1 vs. NCBI_GenBank
Match: gi|195396971|ref|XP_002057102.1| (uncharacterized protein Dvir_GJ16534 [Drosophila virilis] >gi|194146869|gb|EDW62588.1| uncharacterized protein Dvir_GJ16534 [Drosophila virilis]) HSP 1 Score: 66.6254 bits (161), Expect = 9.230e-10 Identity = 36/114 (31.58%), Postives = 57/114 (50.00%), Query Frame = 0
Query: 156 RPTFSHRGSSANAAGVTTTGSSAAP-SPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDFGGLVKKGKEGESNPAGGKVTLDDILAARGEEA 268
R TFS + + S + P + K Q++YTC +C+ RN+ + +VA+ G+V+ CK C HL+ADNL+ F L GK +++ILA +GE+
Sbjct: 52 RATFSDKLEAVTQDESHRVASKSIPLAELQTKMQLIYTCKVCQSRNMETISKVAYNRGVVIVTCKGCANHHLIADNLNW--FTDL------------NGKRNIEEILAEKGEQV 151 The following BLAST results are available for this feature:
BLAST of EWM29858.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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