EWM29858.1, cds877 (CDS) Nannochloropsis gaditana

Overview
NameEWM29858.1
Unique Namecds877
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:627508..627520 -
Alignment locationCM002456.1:627186..627374 -
Alignment locationCM002456.1:626886..627124 -
Alignment locationCM002456.1:626415..626818 -
Alignment locationCM002456.1:626242..626365 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29858.1
Productdnl-type zinc finger
Orig transcript idgnl|cribi|Naga_100017g69.356.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:627508..627520 -
CM002456.1supercontigCM002456.1:627186..627374 -
CM002456.1supercontigCM002456.1:626886..627124 -
CM002456.1supercontigCM002456.1:626415..626818 -
CM002456.1supercontigCM002456.1:626242..626365 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR024158Mt_import_TIM15
IPR007853Znf_DNL-typ
Homology
BLAST of EWM29858.1 vs. NCBI_GenBank
Match: gi|585112439|gb|EWM29858.1| (dnl-type zinc finger [Nannochloropsis gaditana])

HSP 1 Score: 670.233 bits (1728), Expect = 0.000e+0
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0
Query:    1 MKNTGFFPVRIRDERQRTQGNTCTSTGRAKKHSNTCSMDRMDACSTWSSQLVYVLLFFASGVRAAGIGYYADTSNCNAAFQPCPAPLITPSSLPLLSRRQDLLESRRAHGRRKEFFLTVARGKGFGKKPRGDGEEDGKQDGAQEASKVEEGPSIIRPTFSHRGSSANAAGVTTTGSSAAPSPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDFGGLVKKGKEGESNPAGGKVTLDDILAARGEEAKYLDIKSNPELAAKRMNRVGARSDMGRLGGMIYIVSIVYQMVGYHNLDKRDKEE 322
            MKNTGFFPVRIRDERQRTQGNTCTSTGRAKKHSNTCSMDRMDACSTWSSQLVYVLLFFASGVRAAGIGYYADTSNCNAAFQPCPAPLITPSSLPLLSRRQDLLESRRAHGRRKEFFLTVARGKGFGKKPRGDGEEDGKQDGAQEASKVEEGPSIIRPTFSHRGSSANAAGVTTTGSSAAPSPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDFGGLVKKGKEGESNPAGGKVTLDDILAARGEEAKYLDIKSNPELAAKRMNRVGARSDMGRLGGMIYIVSIVYQMVGYHNLDKRDKEE
Sbjct:    1 MKNTGFFPVRIRDERQRTQGNTCTSTGRAKKHSNTCSMDRMDACSTWSSQLVYVLLFFASGVRAAGIGYYADTSNCNAAFQPCPAPLITPSSLPLLSRRQDLLESRRAHGRRKEFFLTVARGKGFGKKPRGDGEEDGKQDGAQEASKVEEGPSIIRPTFSHRGSSANAAGVTTTGSSAAPSPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDFGGLVKKGKEGESNPAGGKVTLDDILAARGEEAKYLDIKSNPELAAKRMNRVGARSDMGRLGGMIYIVSIVYQMVGYHNLDKRDKEE 322          
BLAST of EWM29858.1 vs. NCBI_GenBank
Match: gi|1108474948|emb|CRK96452.1| (CLUMA_CG009871, isoform A [Clunio marinus])

HSP 1 Score: 72.4034 bits (176), Expect = 6.580e-12
Identity = 42/118 (35.59%), Postives = 60/118 (50.85%), Query Frame = 0
Query:  157 PTFSH-RGSSANAAGVTTTGSSAAPSPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDFGGLVKKGKEGESNPAGGKVTLDDILAARGEEAKYLDI 273
            PT S  + +  NA   T   SS       +K QM+YTC +C  RN   + +VA+T+G+V+ RC  C+  HLVADNL      G  K            KV ++DIL  +GEE + + +
Sbjct:   41 PTISSCKQTELNADKPTDQLSSVPLGQLEKKMQMMYTCKVCGTRNSQTISKVAYTQGVVIVRCSGCENNHLVADNL------GWFK----------DKKVNIEDILREKGEEVRKVTL 142          
BLAST of EWM29858.1 vs. NCBI_GenBank
Match: gi|219122820|ref|XP_002181736.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407012|gb|EEC46950.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 73.1738 bits (178), Expect = 3.038e-11
Identity = 53/179 (29.61%), Postives = 90/179 (50.28%), Query Frame = 0
Query:  124 GFGKKPR------GDGEED----GKQDGAQEASKVEEGPSIIRPTFS------HRGSSANAAGVTTTGSSAAPSPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDFGGLVKKGKEGESNPAGGKVTLDDILAARGEEAKYLDIKSNPELAAKRMNR 286
              G +PR       +GE D       DGA++     E P +  P F       H  +++ A  +TTT ++      +RKF +LYTCN+C+ RN+ +V R+A+ +G+V+A C+ C  +HL+ADNL      G  K     E+ P  G  T++    ++ EE    + ++N +    R+++
Sbjct:   92 ALGSRPRRRNSDRDEGEADRSNYHSDDGAEK-----EIPQL--PAFGATSRGMHSSATSRAKNMTTTDATLV----NRKFDLLYTCNLCDTRNVHKVTRIAYHKGVVIATCRGCAVQHLIADNL------GFTKL---WENAPHKG--TIEGYFESQNEEQIDAENQANTQAVVSRVSK 248          
BLAST of EWM29858.1 vs. NCBI_GenBank
Match: gi|586526449|ref|XP_006918169.1| (PREDICTED: DNL-type zinc finger protein [Pteropus alecto] >gi|431899004|gb|ELK07374.1| DNL-type zinc finger protein [Pteropus alecto])

HSP 1 Score: 69.707 bits (169), Expect = 9.689e-11
Identity = 42/126 (33.33%), Postives = 65/126 (51.59%), Query Frame = 0
Query:  151 GPSIIRPTFSHRGSSANAAGVTTTG------SSAAPSPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNL---SKLDFGGLVKKGKEGESNPAGGKVTLDDILAARGEE 267
            GP + R     RG+   AAG    G      +S+ P P +  +Q++YTC +C  R+  Q+ ++A+ +G+V+  C  CD  H++ADNL   S LD                 GK  +++ILAARGE+
Sbjct:   20 GPGLRR--LWGRGARPTAAGKRRAGDWGWRPASSEPGPRATHYQLVYTCKVCGTRSSKQISKLAYHQGVVIVTCPGCDNHHIIADNLGWFSDLD-----------------GKRNIEEILAARGEK 126          
BLAST of EWM29858.1 vs. NCBI_GenBank
Match: gi|976920280|gb|KVI05012.1| (Mitochondrial import protein TIM15 [Cynara cardunculus var. scolymus])

HSP 1 Score: 70.0922 bits (170), Expect = 1.207e-10
Identity = 37/99 (37.37%), Postives = 54/99 (54.55%), Query Frame = 0
Query:  171 VTTTGSSAAPSPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDFGGLVKKGKEGESNPAGGKVTLDDILAARGEEAK 269
            VT +  S     P     M++TC +CE R++  + R ++ +G+VVARC  CD  HL+AD+L      G+            G K +++DILAARGEE K
Sbjct:   92 VTFSAKSELKISPRHDLAMMFTCKVCETRSVKTISRESYEKGVVVARCGGCDNYHLIADHL------GIF-----------GEKGSIEDILAARGEEVK 173          
BLAST of EWM29858.1 vs. NCBI_GenBank
Match: gi|645255007|ref|XP_008233298.1| (PREDICTED: mitochondrial protein import protein ZIM17 [Prunus mume])

HSP 1 Score: 68.9366 bits (167), Expect = 2.664e-10
Identity = 36/103 (34.95%), Postives = 53/103 (51.46%), Query Frame = 0
Query:  167 NAAGVTTTGSSAAPSPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDFGGLVKKGKEGESNPAGGKVTLDDILAARGEEAK 269
            N++ V  + ++   + P     ML+TC +CE R++    R ++  G+VVARC  CD  HL+AD+L                    G   T++DILAARGEE K
Sbjct:   86 NSSDVKFSAAANLKTSPRHDLAMLFTCKVCETRSMKTCSRESYESGVVVARCGGCDNLHLIADHLGYF-----------------GAPGTIEDILAARGEEVK 171          
BLAST of EWM29858.1 vs. NCBI_GenBank
Match: gi|1072234519|gb|OEU19248.1| (hypothetical protein FRACYDRAFT_235297 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 68.5514 bits (166), Expect = 2.800e-10
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 0
Query:  184 SRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNL 231
            S KF + YTCN+CE RN + V R+A+ EG+V+A CK C AKH +ADNL
Sbjct:   72 SSKFSLQYTCNVCEHRNRVIVSRMAYREGVVIAICKGCTAKHWIADNL 119          
BLAST of EWM29858.1 vs. NCBI_GenBank
Match: gi|759148608|ref|XP_011368287.1| (PREDICTED: DNL-type zinc finger protein, partial [Pteropus vampyrus])

HSP 1 Score: 66.6254 bits (161), Expect = 4.406e-10
Identity = 31/93 (33.33%), Postives = 53/93 (56.99%), Query Frame = 0
Query:  176 SSAAPSPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDFGGLVKKGKEGESNPAGGKVTLDDILAARGEEA 268
            +S+ P P +  +Q++YTC +C  R+  Q+ ++A+ +G+V+  C  CD  H++ADNL              G  +   GK  +++ILAARGE+ 
Sbjct:    4 ASSEPGPRATHYQLVYTCKVCGTRSSKQISKLAYHQGVVIVTCPGCDNHHIIADNL--------------GWFSDLDGKRNIEEILAARGEKV 82          
BLAST of EWM29858.1 vs. NCBI_GenBank
Match: gi|1191666064|gb|OTG18032.1| (putative import protein [Helianthus annuus])

HSP 1 Score: 67.781 bits (164), Expect = 7.209e-10
Identity = 37/103 (35.92%), Postives = 51/103 (49.51%), Query Frame = 0
Query:  167 NAAGVTTTGSSAAPSPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDFGGLVKKGKEGESNPAGGKVTLDDILAARGEEAK 269
            N   V  T  S     P     M++TC +CE R++  + R ++ +G VVARC  C+  HL+AD+L                    G K T++DILAARGEE K
Sbjct:   89 NNNDVAFTAKSELKISPRHDLAMMFTCKVCETRSVKTISRESYEKGAVVARCGGCNNYHLIADHLGIF-----------------GEKCTIEDILAARGEEVK 174          
BLAST of EWM29858.1 vs. NCBI_GenBank
Match: gi|195396971|ref|XP_002057102.1| (uncharacterized protein Dvir_GJ16534 [Drosophila virilis] >gi|194146869|gb|EDW62588.1| uncharacterized protein Dvir_GJ16534 [Drosophila virilis])

HSP 1 Score: 66.6254 bits (161), Expect = 9.230e-10
Identity = 36/114 (31.58%), Postives = 57/114 (50.00%), Query Frame = 0
Query:  156 RPTFSHRGSSANAAGVTTTGSSAAP-SPPSRKFQMLYTCNICEGRNLIQVDRVAFTEGIVVARCKHCDAKHLVADNLSKLDFGGLVKKGKEGESNPAGGKVTLDDILAARGEEA 268
            R TFS +  +          S + P +    K Q++YTC +C+ RN+  + +VA+  G+V+  CK C   HL+ADNL+   F  L             GK  +++ILA +GE+ 
Sbjct:   52 RATFSDKLEAVTQDESHRVASKSIPLAELQTKMQLIYTCKVCQSRNMETISKVAYNRGVVIVTCKGCANHHLIADNLNW--FTDL------------NGKRNIEEILAEKGEQV 151          
The following BLAST results are available for this feature:
BLAST of EWM29858.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112439|gb|EWM29858.1|0.000e+0100.00dnl-type zinc finger [Nannochloropsis gaditana][more]
gi|1108474948|emb|CRK96452.1|6.580e-1235.59CLUMA_CG009871, isoform A [Clunio marinus][more]
gi|219122820|ref|XP_002181736.1|3.038e-1129.61predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|586526449|ref|XP_006918169.1|9.689e-1133.33PREDICTED: DNL-type zinc finger protein [Pteropus ... [more]
gi|976920280|gb|KVI05012.1|1.207e-1037.37Mitochondrial import protein TIM15 [Cynara cardunc... [more]
gi|645255007|ref|XP_008233298.1|2.664e-1034.95PREDICTED: mitochondrial protein import protein ZI... [more]
gi|1072234519|gb|OEU19248.1|2.800e-1058.33hypothetical protein FRACYDRAFT_235297 [Fragilario... [more]
gi|759148608|ref|XP_011368287.1|4.406e-1033.33PREDICTED: DNL-type zinc finger protein, partial [... [more]
gi|1191666064|gb|OTG18032.1|7.209e-1035.92putative import protein [Helianthus annuus][more]
gi|195396971|ref|XP_002057102.1|9.230e-1031.58uncharacterized protein Dvir_GJ16534 [Drosophila v... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna877rna877Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications